Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0008566g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 1.4e-110 402.9 199 100.0
Nitab4.5_0006434g0030 Nicotiana tabacum HOM05D004742 ORTHO05D005677 8.7e-76 287.3 185 78.9
Sopen08g001110 Solanum pennellii HOM05D004742 ORTHO05D005677 2.6e-43 179.5 275 44.7
Solyc08g005090.2 Solanum lycopersicum HOM05D004742 ORTHO05D005677 3.3e-43 179.1 284 43.7
PGSC0003DMG400017843 Solanum tuberosum HOM05D004742 ORTHO05D005677 5.3e-41 171.8 283 43.1
PGSC0003DMG400017538 Solanum tuberosum HOM05D004742 ORTHO05D005677 3.8e-39 165.6 229 46.3
Sopen08g025400 Solanum pennellii HOM05D004742 ORTHO05D005677 1.5e-38 163.7 232 45.3
Nitab4.5_0010403g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 5.5e-38 161.8 237 46.4
Solyc08g076870.1 Solanum lycopersicum HOM05D004742 ORTHO05D005677 7.2e-38 161.4 232 44.8
Nitab4.5_0000529g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 2.7e-37 159.5 235 43.4
Dinv25223 Davidia involucrata HOM05D004742 ORTHO05D005677 1.2e-32 144.1 218 41.7
Duzib084G1225 Durio zibethinus HOM05D004742 ORTHO05D005677 5.0e-31 138.7 217 41.9
TPR.G1023 Trifolium pratense HOM05D004742 ORTHO05D005677 1.9e-30 136.7 221 41.2
CANSAT21G2184 Cannabis sativa HOM05D004742 ORTHO05D005677 3.2e-30 136.0 221 41.6
Duzib084G0476 Durio zibethinus HOM05D004742 ORTHO05D005677 3.2e-30 136.0 217 41.0
Duzib205G0563 Durio zibethinus HOM05D004742 ORTHO05D005677 8.0e-29 131.3 218 39.4
Thecc.03G226400 Theobroma cacao HOM05D004742 ORTHO05D005677 1.4e-28 130.6 219 40.2
VMungo1215G1913 Vigna mungo HOM05D004742 ORTHO05D005677 1.4e-28 130.6 223 41.7
Actinidia14802 Actinidia chinensis HOM05D004742 ORTHO05D005677 3.0e-28 129.4 213 41.8
Manes.17G011300 Manihot esculenta HOM05D004742 ORTHO05D005677 3.0e-28 129.4 222 40.5
Medtr5g030210 Medicago truncatula HOM05D004742 ORTHO05D005677 4.0e-28 129.0 222 40.1
Medtr5g430370 Medicago truncatula HOM05D004742 ORTHO05D005677 4.0e-28 129.0 222 40.1
MSTRG.12162 Avicennia marina HOM05D004742 ORTHO05D005677 5.2e-28 128.6 199 42.2
Duzib068G0638 Durio zibethinus HOM05D004742 ORTHO05D005677 8.8e-28 127.9 219 37.0
Lalb_Chr09g0325611 Lupinus albus HOM05D004742 ORTHO05D005677 8.8e-28 127.9 223 39.5
Glyma.09G205100 Glycine max HOM05D004742 ORTHO05D005677 1.2e-27 127.5 228 40.4
Glyma.01G017800 Glycine max HOM05D004742 ORTHO05D005677 1.5e-27 127.1 223 40.8
arahy.Tifrunner.gnm1.ann1.EZQY9P Arachis hypogaea HOM05D004742 ORTHO05D005677 3.4e-27 125.9 220 39.5
arahy.Tifrunner.gnm1.ann1.RMRK9P Arachis hypogaea HOM05D004742 ORTHO05D005677 3.4e-27 125.9 220 39.5
Ah.12g055130 Amaranthus hybridus HOM05D004742 ORTHO05D005677 4.4e-27 125.6 214 40.2
COL.COLO4_17015 Corchorus olitorius HOM05D004742 ORTHO05D005677 5.7e-27 125.2 215 37.7
FvH4_5g22200 Fragaria vesca HOM05D004742 ORTHO05D005677 5.7e-27 125.2 210 40.5
FAN08G0406 Fragaria x ananassa HOM05D004742 ORTHO05D005677 7.5e-27 124.8 210 40.5
ClCG10G001520 Citrullus lanatus HOM05D004742 ORTHO05D005677 9.8e-27 124.4 220 38.6
Phvul.002G140700 Phaseolus vulgaris HOM05D004742 ORTHO05D005677 1.3e-26 124.0 223 39.9
Oeu006253.1 Olea europaea HOM05D004742 ORTHO05D005677 1.7e-26 123.6 222 39.2
Prupe.5G034500 Prunus persica HOM05D004742 ORTHO05D005677 2.2e-26 123.2 220 38.6
Peaxi162Scf00045g00023 Petunia axillaris HOM05D004742 ORTHO05D005677 2.8e-26 122.9 163 46.0
FAN18G2180 Fragaria x ananassa HOM05D004742 ORTHO05D005677 3.7e-26 122.5 210 40.0
TWI60G1233 Tripterygium wilfordii HOM05D004742 ORTHO05D005677 3.7e-26 122.5 221 38.0
Migut.E00942 Erythranthe guttata HOM05D004742 ORTHO05D005677 4.9e-26 122.1 193 40.4
FAN13G2654 Fragaria x ananassa HOM05D004742 ORTHO05D005677 6.3e-26 121.7 210 40.0
Gohir.A11G030800 Gossypium hirsutum HOM05D004742 ORTHO05D005677 6.3e-26 121.7 218 40.4
FAN04G2756 Fragaria x ananassa HOM05D004742 ORTHO05D005677 8.3e-26 121.3 205 42.0
Nn1g00114 Nelumbo nucifera HOM05D004742 ORTHO05D005677 8.3e-26 121.3 221 39.4
Actinidia03372 Actinidia chinensis HOM05D004742 ORTHO05D005677 1.1e-25 120.9 236 35.2
CsaV3_3G001600 Cucumis sativus L. HOM05D004742 ORTHO05D005677 1.8e-25 120.2 219 39.3
Gohir.A08G156100 Gossypium hirsutum HOM05D004742 ORTHO05D005677 1.8e-25 120.2 216 37.0
Gohir.A09G199100 Gossypium hirsutum HOM05D004742 ORTHO05D005677 1.8e-25 120.2 219 38.4
Hma1.2p1_0574F.1_g181490 Hydrangea macrophylla HOM05D004742 ORTHO05D005677 1.8e-25 120.2 244 36.5
CSS0004262 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 2.4e-25 119.8 220 39.5
MELO3C027362.2 Cucumis melo HOM05D004742 ORTHO05D005677 3.1e-25 119.4 217 37.8
QL12p005003 Quercus lobata HOM05D004742 ORTHO05D005677 3.1e-25 119.4 225 37.8
Ca_06086_v3 Cicer arietinum L. HOM05D004742 ORTHO05D005677 4.1e-25 119.0 216 38.4
Sabra03G0062000 Salix brachista HOM05D004742 ORTHO05D001134 5.4e-25 118.6 221 38.9
MD16G1273500 Malus domestica HOM05D004742 ORTHO05D005677 7.0e-25 118.2 227 38.3
Hma1.2p1_0303F.1_g119030 Hydrangea macrophylla HOM05D004742 ORTHO05D005677 9.2e-25 117.9 225 38.2
CiPaw.11G094200 Carya illinoinensis HOM05D004742 ORTHO05D005677 1.6e-24 117.1 222 34.7
Manes.15G188900 Manihot esculenta HOM05D004742 ORTHO05D005677 1.6e-24 117.1 215 38.6
Lj3A410T15 Lonicera japonica HOM05D004742 ORTHO05D005677 2.7e-24 116.3 212 37.7
CiPaw.12G064300 Carya illinoinensis HOM05D004742 ORTHO05D005677 3.5e-24 115.9 217 34.1
Gorai.007G032300 Gossypium raimondii HOM05D004742 ORTHO05D005677 3.5e-24 115.9 212 36.3
Gohir.D09G193400 Gossypium hirsutum HOM05D004742 ORTHO05D005677 4.5e-24 115.5 220 35.9
PGR031G2228 Punica granatum HOM05D004742 ORTHO05D005677 7.8e-24 114.8 234 36.8
RcHm_v2.0_Chr7g0209881 Rosa chinensis HOM05D004742 ORTHO05D005677 7.8e-24 114.8 218 39.0
Gorai.006G216900 Gossypium raimondii HOM05D004742 ORTHO05D005677 1.0e-23 114.4 220 35.5
SalBow6G3311 Salvia bowleyana HOM05D004742 ORTHO05D005677 1.7e-23 113.6 210 36.7
CSS0028083 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 2.3e-23 113.2 220 38.2
MD06G1035300 Malus domestica HOM05D004742 ORTHO05D005677 2.3e-23 113.2 219 35.6
Gohir.D08G176700 Gossypium hirsutum HOM05D004742 ORTHO05D005677 3.8e-23 112.5 215 34.9
Gorai.004G184600 Gossypium raimondii HOM05D004742 ORTHO05D005677 3.8e-23 112.5 215 34.9
Lalb_Chr16g0381321 Lupinus albus HOM05D004742 ORTHO05D005677 3.8e-23 112.5 214 38.8
Rhsim11G0016100 Rhododendron simsii HOM05D004742 ORTHO05D005677 5.0e-23 112.1 211 37.0
Gohir.D11G029500 Gossypium hirsutum HOM05D004742 ORTHO05D005677 8.6e-23 111.3 218 37.2
SGA_v2.0_scaffold6G03142 Striga asiatica HOM05D004742 ORTHO05D005677 1.5e-22 110.5 191 38.7
Psat2g136480 Pisum sativum HOM05D004742 ORTHO05D005677 2.5e-22 109.8 222 36.0
TAR636G0473 Trochodendron aralioides HOM05D004742 ORTHO05D005677 2.5e-22 109.8 209 36.8
Potri.001G141600 Populus trichocarpa HOM05D004742 ORTHO05D005677 3.3e-22 109.4 219 35.6
CSS0042903 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 4.3e-22 109.0 209 35.4
CSS0044674 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 4.3e-22 109.0 214 35.0
SGA_v2.0_scaffold20G09271 Striga asiatica HOM05D004742 ORTHO05D005677 5.6e-22 108.6 189 39.7
TAR374G0395 Trochodendron aralioides HOM05D004742 ORTHO05D005677 7.3e-22 108.2 215 37.2
DCAR_008263 Daucus carota HOM05D004742 ORTHO05D005677 9.5e-22 107.8 240 33.3
Lsat_1_v5_gn_3_18001 Lactuca sativa HOM05D004742 ORTHO05D005677 9.5e-22 107.8 240 33.8
EL10Ac5g12098 Beta vulgaris HOM05D004742 ORTHO05D005677 1.6e-21 107.1 211 38.9
Lj2g0023551 Lotus japonicus HOM05D004742 ORTHO05D005677 2.8e-21 106.3 213 38.5
Actinidia25968 Actinidia chinensis HOM05D004742 ORTHO05D005677 6.1e-21 105.1 236 33.5
Cfa012451 Carpinus fangiana HOM05D004742 ORTHO05D005677 8.0e-21 104.8 222 33.3
HanXRQChr17g0536221 Helianthus annuus HOM05D004742 ORTHO05D005677 1.4e-20 104.0 232 36.2
Rhsim07G0128300 Rhododendron simsii HOM05D004742 ORTHO05D005677 6.8e-20 101.7 212 33.5
TAR629G2541 Trochodendron aralioides HOM05D004742 ORTHO05D005677 8.9e-20 101.3 204 37.3
Potri.003G092700 Populus trichocarpa HOM05D004742 ORTHO05D005677 2.6e-19 99.8 217 34.6
Lsat_1_v5_gn_6_421 Lactuca sativa HOM05D004742 ORTHO05D005677 2.9e-18 96.3 245 31.0
Ciclev10016629m.g Citrus clementina HOM05D004742 ORTHO05D005677 4.9e-18 95.5 223 33.6
Atru.chr6.1683 Acer truncatum HOM05D004742 ORTHO05D005677 1.1e-17 94.4 129 41.9
EL10Ac5g12097 Beta vulgaris HOM05D004742 ORTHO05D005677 1.1e-17 94.4 199 36.2
THA.LOC104814447 Tarenaya hassleriana HOM05D004742 ORTHO05D005677 1.4e-17 94.0 226 33.2
HanXRQChr06g0167541 Helianthus annuus HOM05D004742 ORTHO05D005677 3.2e-17 92.8 212 35.4
THA.LOC104812742 Tarenaya hassleriana HOM05D004742 ORTHO05D005677 3.2e-17 92.8 220 33.6
Eucgr.D02205 Eucalyptus grandis HOM05D004742 ORTHO05D005677 7.0e-17 91.7 227 32.6
DCAR_032208 Daucus carota HOM05D004742 ORTHO05D005677 1.2e-16 90.9 194 33.5
Cc08_g02870 Coffea canephora HOM05D004742 ORTHO05D005677 3.5e-16 89.4 235 34.0
Haze_08216 Corylus avellana HOM05D004742 ORTHO05D005677 3.0e-15 86.3 222 31.1
Sed0001883 Sechium edule HOM05D004742 ORTHO05D005677 3.0e-15 86.3 220 33.6
DCAR_004297 Daucus carota HOM05D004742 ORTHO05D005677 1.9e-14 83.6 216 33.3
Aqoxy3G02336 Aquilegia oxysepala HOM05D004742 ORTHO05D005677 2.5e-14 83.2 238 34.0
AUR62018706 Chenopodium quinoa HOM05D004742 ORTHO05D005677 3.6e-13 79.3 185 34.1
Aa31LG9G15210 Aethionema arabicum HOM05D004742 ORTHO05D005677 5.2e-12 75.5 228 31.1
HanXRQChr12g0360911 Helianthus annuus HOM05D004742 ORTHO05D005677 1.5e-11 73.9 237 27.4
BcaB03g13715 Brassica carinata HOM05D004742 ORTHO05D005677 7.5e-11 71.6 218 30.7
A05p24650 Brassica napus HOM05D004742 ORTHO05D005677 7.5e-11 71.6 214 30.8
BraA05t21351Z Brassica rapa HOM05D004742 ORTHO05D005677 7.5e-11 71.6 214 30.8
BcaC05g27832 Brassica carinata HOM05D004742 ORTHO05D005677 2.9e-10 69.7 215 31.2
C05p38300 Brassica napus HOM05D004742 ORTHO05D005677 2.9e-10 69.7 215 31.2
BolC5t32562H Brassica oleracea HOM05D004742 ORTHO05D005677 2.9e-10 69.7 215 31.2
MBI04_g46668_MAGBIO Magnolia biondii HOM05D004742 ORTHO05D005677 2.9e-10 69.7 197 32.0
CARHR032080 Cardamine hirsuta HOM05D004742 ORTHO05D005677 8.3e-10 68.2 224 29.9
HPP92_020967 Vanilla planifolia HOM05D004742 ORTHO05D005677 1.4e-09 67.4 50 58.0
BcaC01g01725 Brassica carinata HOM05D004742 ORTHO05D005677 1.9e-09 67.0 218 30.3
C03p72460 Brassica napus HOM05D004742 ORTHO05D005677 1.9e-09 67.0 218 30.3
Aa31LG2G13280 Aethionema arabicum HOM05D004742 ORTHO05D005677 9.2e-09 64.7 221 28.5
A05p10550 Brassica napus HOM05D004742 ORTHO05D005677 1.2e-08 64.3 187 32.6
BraA05t19993Z Brassica rapa HOM05D004742 ORTHO05D005677 1.2e-08 64.3 187 32.6
Thhalv10017262m.g Eutrema salsugineum HOM05D004742 ORTHO05D005677 2.0e-08 63.5 210 30.5
PSO210G7694 Papaver somniferum HOM05D004742 ORTHO05D005677 2.0e-08 63.5 91 42.9
BolC3t19547H Brassica oleracea HOM05D004742 ORTHO05D005677 3.5e-08 62.8 218 29.8
Thhalv10008795m.g Eutrema salsugineum HOM05D004742 ORTHO05D005677 3.5e-08 62.8 219 30.1
HPP92_014611 Vanilla planifolia HOM05D004742 ORTHO05D005677 3.5e-08 62.8 50 56.0
C04p13600 Brassica napus HOM05D004742 ORTHO05D005677 6.0e-08 62.0 210 30.0
BolC4t22951H Brassica oleracea HOM05D004742 ORTHO05D005677 7.8e-08 61.6 201 30.3
MBI04_g25303_MAGBIO Magnolia biondii HOM05D004742 ORTHO05D005677 7.8e-08 61.6 189 31.2
BcaC02g11593 Brassica carinata HOM05D004742 ORTHO05D005677 1.0e-07 61.2 202 31.7
Sp4g17420 Schrenkiella parvula HOM05D004742 ORTHO05D005677 1.3e-07 60.8 203 31.0
Zm00001eb251250 Zea mays HOM05D004742 ORTHO05D005677 1.3e-07 60.8 39 59.0
ECA233G6051 Erigeron canadensis HOM05D007880 ORTHO05D003386 2.3e-07 60.1 49 51.0
Carub.0001s3103 Capsella rubella HOM05D004742 ORTHO05D005677 3.0e-07 59.7 220 29.5
Carub.0004s1689 Capsella rubella HOM05D004742 ORTHO05D005677 5.0e-07 58.9 194 34.0
Lj8P301T9 Lonicera japonica HOM05D004742 ORTHO05D005677 1.1e-06 57.8 137 31.4
ATR0665G540 Amborella trichopoda HOM05D004742 ORTHO05D005677 1.5e-06 57.4 44 59.1
Os02g0693000 Oryza sativa ssp. japonica HOM05D004742 ORTHO05D005677 3.3e-06 56.2 37 59.5
TAR375G0192 Trochodendron aralioides HOM05D004742 ORTHO05D005677 5.6e-06 55.5 145 35.2
CDE06G1944 Ceratophyllum demersum HOM05D003296 ORTHO05D003720 7.3e-06 55.1 97 36.1


User provided reference genes

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