Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0008552g0050 Nicotiana tabacum HOM05D002548 ORTHO05D015821 4.5e-56 221.1 117 100.0
Nitab4.5_0001699g0040 Nicotiana tabacum HOM05D002548 ORTHO05D015821 1.6e-16 89.7 57 80.7
Nitab4.5_0011763g0010 Nicotiana tabacum HOM05D002548 ORTHO05D015821 7.8e-16 87.4 56 78.6
Nitab4.5_0003312g0090 Nicotiana tabacum HOM05D002548 ORTHO05D015821 1.7e-15 86.3 60 73.3
Nitab4.5_0002612g0100 Nicotiana tabacum HOM05D002548 ORTHO05D003031 5.1e-15 84.7 51 88.2
Nitab4.5_0009460g0010 Nicotiana tabacum HOM05D002548 ORTHO05D015821 4.3e-14 81.6 57 75.4
Solyc01g100020.4 Solanum lycopersicum HOM05D002548 ORTHO05D003031 7.3e-14 80.9 51 82.4
Sopen01g043540 Solanum pennellii HOM05D002548 ORTHO05D003031 2.8e-13 79.0 50 82.0
Peaxi162Scf00037g01718 Petunia axillaris HOM05D002548 ORTHO05D003031 4.7e-13 78.2 51 76.5
CAN.G1273.30 Capsicum annuum HOM05D002548 ORTHO05D015821 8.1e-13 77.4 51 78.4
ATR0693G075 Amborella trichopoda HOM05D002548 ORTHO05D015821 3.2e-09 65.5 51 66.7
Ca_01908_v3 Cicer arietinum L. HOM05D002548 ORTHO05D003031 3.2e-09 65.5 55 58.2
MELO3C004211.2 Cucumis melo HOM05D002548 ORTHO05D003031 4.1e-09 65.1 50 64.0
Oeu043326.3 Olea europaea HOM05D002548 ORTHO05D003031 4.1e-09 65.1 51 62.7
Cc02_g34510 Coffea canephora HOM05D002548 ORTHO05D003031 7.1e-09 64.3 52 67.3
CsaV3_2G006790 Cucumis sativus L. HOM05D002548 ORTHO05D003031 9.2e-09 63.9 50 64.0
CDE05G0041 Ceratophyllum demersum HOM05D002548 ORTHO05D003031 1.2e-08 63.5 51 66.7
QL03p019133 Quercus lobata HOM05D002548 ORTHO05D003031 2.7e-08 62.4 51 62.7
CDE11G0396 Ceratophyllum demersum HOM05D002548 ORTHO05D003031 3.5e-08 62.0 51 64.7
Glyma.15G152100 Glycine max HOM05D002548 ORTHO05D003031 3.5e-08 62.0 62 56.5
Dinv24404 Davidia involucrata HOM05D002548 ORTHO05D003031 4.6e-08 61.6 40 77.5
Dinv29713 Davidia involucrata HOM05D002548 ORTHO05D003031 6.0e-08 61.2 50 62.0
Lj6A682T77 Lonicera japonica HOM05D002548 ORTHO05D003031 6.0e-08 61.2 61 54.1
MBI18_g25081_MAGBIO Magnolia biondii HOM05D002548 ORTHO05D003031 6.0e-08 61.2 50 64.0
Sc01g0005280 Simmondsia chinensis HOM05D002548 ORTHO05D003031 6.0e-08 61.2 48 68.8
ClCG02G015220 Citrullus lanatus HOM05D002548 ORTHO05D003031 7.8e-08 60.8 50 62.0
Lj9C201T6 Lonicera japonica HOM05D002548 ORTHO05D015821 7.8e-08 60.8 51 62.7
SGA_v2.0_scaffold81G26109 Striga asiatica HOM05D002548 ORTHO05D003031 7.8e-08 60.8 53 64.2
TAR633G0318 Trochodendron aralioides HOM05D002548 ORTHO05D003031 7.8e-08 60.8 51 62.7
VMungo1309G2358 Vigna mungo HOM05D002548 ORTHO05D003031 7.8e-08 60.8 62 54.8
Nn3g21569 Nelumbo nucifera HOM05D002548 ORTHO05D003031 1.0e-07 60.5 49 67.3
Dinv44341 Davidia involucrata HOM05D002548 ORTHO05D003031 1.3e-07 60.1 50 62.0
Glyma.09G041400 Glycine max HOM05D002548 ORTHO05D003031 1.3e-07 60.1 62 54.8
Lalb_Chr18g0059101 Lupinus albus HOM05D002548 ORTHO05D003031 1.3e-07 60.1 56 58.9
CiPaw.07G025000 Carya illinoinensis HOM05D002548 ORTHO05D003031 1.7e-07 59.7 51 60.8
Phvul.009G251700 Phaseolus vulgaris HOM05D002548 ORTHO05D003031 1.7e-07 59.7 62 53.2
SalBow3G2202 Salvia bowleyana HOM05D002548 ORTHO05D003031 1.7e-07 59.7 52 63.5
MSTRG.27968 Avicennia marina HOM05D002548 ORTHO05D003031 2.3e-07 59.3 53 62.3
DCAR_002487 Daucus carota HOM05D002548 ORTHO05D003031 2.3e-07 59.3 52 65.4
FvH4_4g18810 Fragaria vesca HOM05D002548 ORTHO05D003031 2.3e-07 59.3 51 62.7
FAN17G0016 Fragaria x ananassa HOM05D002548 ORTHO05D003031 2.3e-07 59.3 51 62.7
Hma1.2p1_1352F.1_g277520 Hydrangea macrophylla HOM05D002548 ORTHO05D003031 2.3e-07 59.3 60 51.7
Lj3A826G71 Lonicera japonica HOM05D002548 ORTHO05D003031 2.3e-07 59.3 51 58.8
ClCG06G004910 Citrullus lanatus HOM05D002548 ORTHO05D003031 3.0e-07 58.9 52 63.5
PGR004G1545 Punica granatum HOM05D002548 ORTHO05D003031 3.0e-07 58.9 40 72.5
SHI12819 Sapria himalayana HOM05D002548 ORTHO05D003031 3.0e-07 58.9 38 73.7
GSVIVG01035095001 Vitis vinifera HOM05D002548 ORTHO05D003031 3.0e-07 58.9 51 60.8
arahy.Tifrunner.gnm1.ann1.I1DXP3 Arachis hypogaea HOM05D002548 ORTHO05D003031 3.9e-07 58.5 57 57.9
Cfa015437 Carpinus fangiana HOM05D002548 ORTHO05D003031 3.9e-07 58.5 40 72.5
COL.COLO4_13805 Corchorus olitorius HOM05D002548 ORTHO05D015821 3.9e-07 58.5 56 58.9
Haze_01147 Corylus avellana HOM05D002548 ORTHO05D003031 3.9e-07 58.5 40 72.5
Solyc01g065720.4 Solanum lycopersicum HOM05D002548 ORTHO05D003031 3.9e-07 58.5 51 60.8
Thecc.04G290500 Theobroma cacao HOM05D002548 ORTHO05D003031 3.9e-07 58.5 53 62.3
AUR62018063 Chenopodium quinoa HOM05D002548 ORTHO05D003031 5.1e-07 58.2 41 68.3
Hund20533 Selenicereus undatus HOM05D002548 ORTHO05D003031 5.1e-07 58.2 39 74.4
Ah.04g153690 Amaranthus hybridus HOM05D002548 ORTHO05D003031 6.6e-07 57.8 41 68.3
arahy.Tifrunner.gnm1.ann1.Y1617F Arachis hypogaea HOM05D002548 ORTHO05D003031 6.6e-07 57.8 82 41.5
Ciclev10000089m.g Citrus clementina HOM05D002548 ORTHO05D003031 6.6e-07 57.8 35 77.1
Ciclev10004210m.g Citrus clementina HOM05D002548 ORTHO05D003031 6.6e-07 57.8 40 70.0
EL10Ac3g06654 Beta vulgaris HOM05D002548 ORTHO05D003031 8.6e-07 57.4 40 70.0
Cpa.g.sc50.149 Carica papaya HOM05D002548 ORTHO05D003031 8.6e-07 57.4 40 70.0
Cc03_g01430 Coffea canephora HOM05D002548 ORTHO05D003031 8.6e-07 57.4 40 70.0
MELO3C021299.2 Cucumis melo HOM05D002548 ORTHO05D003031 8.6e-07 57.4 52 63.5
Medtr2g435560 Medicago truncatula HOM05D002548 ORTHO05D003031 8.6e-07 57.4 54 59.3
Phvul.007G198600 Phaseolus vulgaris HOM05D002548 ORTHO05D003031 8.6e-07 57.4 51 52.9
THA.LOC104818736 Tarenaya hassleriana HOM05D002548 ORTHO05D003031 8.6e-07 57.4 35 77.1
Zm00001eb285800 Zea mays HOM05D002548 ORTHO05D003031 8.6e-07 57.4 40 67.5
Aa31LG8G3860 Aethionema arabicum HOM05D002548 ORTHO05D003031 1.1e-06 57.0 40 70.0
A05p32840 Brassica napus HOM05D002548 ORTHO05D003031 1.1e-06 57.0 35 80.0
C05p49550 Brassica napus HOM05D002548 ORTHO05D003031 1.1e-06 57.0 35 80.0
BolC5t33709H Brassica oleracea HOM05D002548 ORTHO05D003031 1.1e-06 57.0 35 80.0
ECA234G4518 Erigeron canadensis HOM05D002608 ORTHO05D003031 1.1e-06 57.0 51 54.9
Gohir.D11G280550 Gossypium hirsutum HOM05D002548 ORTHO05D003031 1.1e-06 57.0 40 67.5
Gorai.007G302800 Gossypium raimondii HOM05D002548 ORTHO05D003031 1.1e-06 57.0 40 67.5
Lsat_1_v5_gn_3_21860 Lactuca sativa HOM05D002548 ORTHO05D003031 1.1e-06 57.0 51 54.9
Os05g0358700 Oryza sativa ssp. japonica HOM05D002548 ORTHO05D003031 1.1e-06 57.0 40 67.5
Sed0006408 Sechium edule HOM05D002548 ORTHO05D003031 1.1e-06 57.0 47 61.7
TWI73G1219 Tripterygium wilfordii HOM05D002548 ORTHO05D003031 1.1e-06 57.0 40 67.5
CSS0001894 Camellia sinensis var. sinensis HOM05D002548 ORTHO05D003031 1.5e-06 56.6 35 77.1
CSS0029965 Camellia sinensis var. sinensis HOM05D002548 ORTHO05D003031 1.5e-06 56.6 35 77.1
DCAR_014258 Daucus carota HOM05D002548 ORTHO05D003031 1.5e-06 56.6 51 60.8
ECA246G2933 Erigeron canadensis HOM05D002548 ORTHO05D003031 1.5e-06 56.6 52 55.8
RcHm_v2.0_Chr4g0423621 Rosa chinensis HOM05D002548 ORTHO05D003031 1.5e-06 56.6 51 60.8
Sc19g0005510 Simmondsia chinensis HOM05D002548 ORTHO05D003031 1.5e-06 56.6 62 51.6
TWI56G0594 Tripterygium wilfordii HOM05D002548 ORTHO05D003031 1.5e-06 56.6 46 58.7
Gohir.A10G167300 Gossypium hirsutum HOM05D002548 ORTHO05D003031 1.9e-06 56.2 40 67.5
Gohir.D10G173400 Gossypium hirsutum HOM05D002548 ORTHO05D003031 1.9e-06 56.2 40 67.5
Gorai.011G193900 Gossypium raimondii HOM05D002548 ORTHO05D003031 1.9e-06 56.2 40 67.5
Peaxi162Scf00065g01031 Petunia axillaris HOM05D002548 ORTHO05D003031 1.9e-06 56.2 64 51.6
Psat1g156040 Pisum sativum HOM05D002548 ORTHO05D003031 1.9e-06 56.2 57 56.1
Thecc.05G317000 Theobroma cacao HOM05D002548 ORTHO05D003031 1.9e-06 56.2 46 60.9
Atru.chr4.2918 Acer truncatum HOM05D002548 ORTHO05D003031 2.5e-06 55.8 35 77.1
AL3G29710 Arabidopsis lyrata HOM05D002548 ORTHO05D003031 2.5e-06 55.8 40 70.0
CSS0031783 Camellia sinensis var. sinensis HOM05D002548 ORTHO05D003031 2.5e-06 55.8 41 63.4
CSS0035512 Camellia sinensis var. sinensis HOM05D002548 ORTHO05D003031 2.5e-06 55.8 41 63.4
CSS0042391 Camellia sinensis var. sinensis HOM05D002548 ORTHO05D003031 2.5e-06 55.8 41 63.4
Thhalv10019948m.g Eutrema salsugineum HOM05D002548 ORTHO05D003031 2.5e-06 55.8 40 70.0
HanXRQChr03g0083791 Helianthus annuus HOM05D002548 ORTHO05D003031 2.5e-06 55.8 40 67.5
Lj5g0015075 Lotus japonicus HOM05D002548 ORTHO05D003031 2.5e-06 55.8 45 60.0
Manes.08G114700 Manihot esculenta HOM05D002548 ORTHO05D003031 2.5e-06 55.8 46 58.7
Manes.15G009600 Manihot esculenta HOM05D002548 ORTHO05D003031 2.5e-06 55.8 53 60.4
Os01g0310100 Oryza sativa ssp. japonica HOM05D002548 ORTHO05D015821 2.5e-06 55.8 40 65.0
Sed0007898 Sechium edule HOM05D002548 ORTHO05D003031 2.5e-06 55.8 51 60.8
Sed0021308 Sechium edule HOM05D002548 ORTHO05D003031 2.5e-06 55.8 52 59.6
Actinidia18634 Actinidia chinensis HOM05D002548 ORTHO05D003031 3.3e-06 55.5 35 74.3
AT3G16785 Arabidopsis thaliana HOM05D002548 ORTHO05D003031 3.3e-06 55.5 35 77.1
Carub.0003s1650 Capsella rubella HOM05D002548 ORTHO05D003031 3.3e-06 55.5 35 77.1
AUR62015262 Chenopodium quinoa HOM05D002548 ORTHO05D003031 3.3e-06 55.5 40 67.5
Duzib177G0244 Durio zibethinus HOM05D002548 ORTHO05D003031 3.3e-06 55.5 46 58.7
Lj6g0012924 Lotus japonicus HOM05D002548 ORTHO05D003031 3.3e-06 55.5 39 69.2
Oeu031987.1 Olea europaea HOM05D002548 ORTHO05D003031 3.3e-06 55.5 52 61.5
PSO407G0187 Papaver somniferum HOM05D002548 ORTHO05D003031 3.3e-06 55.5 52 55.8
Sabra13G0010900 Salix brachista HOM05D002548 ORTHO05D003031 3.3e-06 55.5 52 55.8
Sp3g15040 Schrenkiella parvula HOM05D002548 ORTHO05D003031 3.3e-06 55.5 35 77.1
HPP92_001312 Vanilla planifolia HOM05D002548 ORTHO05D003031 3.3e-06 55.5 35 74.3
BcaB06g25774 Brassica carinata HOM05D002548 ORTHO05D003031 4.3e-06 55.1 34 79.4
CiPaw.02G079100 Carya illinoinensis HOM05D002548 ORTHO05D003031 4.3e-06 55.1 50 58.0
Duzib151G1026 Durio zibethinus HOM05D002548 ORTHO05D003031 4.3e-06 55.1 40 65.0
MD13G1162600 Malus domestica HOM05D002548 ORTHO05D003031 4.3e-06 55.1 40 67.5
MD16G1162400 Malus domestica HOM05D002548 ORTHO05D003031 4.3e-06 55.1 40 67.5
Nn4g25730 Nelumbo nucifera HOM05D002548 ORTHO05D003031 4.3e-06 55.1 49 59.2
Potri.008G211100 Populus trichocarpa HOM05D002548 ORTHO05D003031 4.3e-06 55.1 40 67.5
Potri.010G006300 Populus trichocarpa HOM05D002548 ORTHO05D003031 4.3e-06 55.1 40 67.5
Potri.013G012300 Populus trichocarpa HOM05D002548 ORTHO05D003031 4.3e-06 55.1 48 58.3
Prupe.1G130000 Prunus persica HOM05D002548 ORTHO05D003031 4.3e-06 55.1 40 67.5
Sabra10G0005400 Salix brachista HOM05D002548 ORTHO05D003031 4.3e-06 55.1 40 67.5
Hund24880 Selenicereus undatus HOM05D002548 ORTHO05D003031 4.3e-06 55.1 50 56.0
THA.LOC104821784 Tarenaya hassleriana HOM05D002548 ORTHO05D003031 4.3e-06 55.1 40 67.5
TPR.G17701 Trifolium pratense HOM05D002548 ORTHO05D003031 4.3e-06 55.1 48 56.2
vmacro08104 Vaccinium macrocarpon HOM05D002548 ORTHO05D003031 4.3e-06 55.1 39 71.8
EL10Ac4g09878 Beta vulgaris HOM05D002548 ORTHO05D003031 5.6e-06 54.7 35 74.3
DCAR_030494 Daucus carota HOM05D002548 ORTHO05D003031 5.6e-06 54.7 60 51.7
Migut.N00069 Erythranthe guttata HOM05D002548 ORTHO05D003031 5.6e-06 54.7 53 58.5
HanXRQChr10g0293451 Helianthus annuus HOM05D002548 ORTHO05D003031 5.6e-06 54.7 35 71.4
PSO832G1027 Papaver somniferum HOM05D002548 ORTHO05D003031 5.6e-06 54.7 35 71.4
MSTRG.21784 Avicennia marina HOM05D002548 ORTHO05D003031 7.3e-06 54.3 40 67.5
ECA240G1331 Erigeron canadensis HOM05D002548 ORTHO05D003031 7.3e-06 54.3 40 65.0
FvH4_6g06940 Fragaria vesca HOM05D002548 ORTHO05D003031 7.3e-06 54.3 46 60.9
Gohir.D02G056200 Gossypium hirsutum HOM05D002548 ORTHO05D003031 7.3e-06 54.3 52 59.6
Gorai.002G028800 Gossypium raimondii HOM05D002548 ORTHO05D003031 7.3e-06 54.3 53 58.5
Gorai.005G062100 Gossypium raimondii HOM05D002548 ORTHO05D003031 7.3e-06 54.3 52 59.6
Lsat_1_v5_gn_6_76021 Lactuca sativa HOM05D002548 ORTHO05D003031 7.3e-06 54.3 35 74.3
Lalb_Chr21g0310471 Lupinus albus HOM05D002548 ORTHO05D003031 7.3e-06 54.3 45 57.8
Medtr1g083620 Medicago truncatula HOM05D002548 ORTHO05D003031 7.3e-06 54.3 49 55.1
PSO170G0357 Papaver somniferum HOM05D002548 ORTHO05D003031 7.3e-06 54.3 52 55.8
Psat6g151640 Pisum sativum HOM05D002548 ORTHO05D003031 7.3e-06 54.3 45 57.8
RcHm_v2.0_Chr3g0456481 Rosa chinensis HOM05D002548 ORTHO05D003031 7.3e-06 54.3 46 60.9
MD04G1197500 Malus domestica HOM05D002548 ORTHO05D003031 9.5e-06 53.9 35 74.3


User provided reference genes

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