Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0008536g0030 Nicotiana tabacum HOM05D003361 ORTHO05D003760 3.8e-121 438.7 321 100.0
Nitab4.5_0002329g0140 Nicotiana tabacum HOM05D003361 ORTHO05D003760 1.5e-80 303.9 285 81.4
PGSC0003DMG400007912 Solanum tuberosum HOM05D003361 ORTHO05D003760 1.2e-74 284.3 301 65.4
Peaxi162Scf01694g00019 Petunia axillaris HOM05D003361 ORTHO05D003760 3.8e-73 279.3 298 82.2
Solyc12g009870.2 Solanum lycopersicum HOM05D003361 ORTHO05D003760 3.0e-70 269.6 301 62.8
CAN.G1281.4 Capsicum annuum HOM05D003361 ORTHO05D003760 3.5e-50 203.0 226 65.9
Nitab4.5_0002286g0090 Nicotiana tabacum HOM05D003361 ORTHO05D003760 7.8e-50 201.8 226 65.9
Sopen07g003470 Solanum pennellii HOM05D003361 ORTHO05D003760 3.0e-49 199.9 179 59.8
PGSC0003DMG400030688 Solanum tuberosum HOM05D003361 ORTHO05D003760 1.5e-48 197.6 297 67.7
Solyc07g007420.3 Solanum lycopersicum HOM05D003361 ORTHO05D003760 7.3e-48 195.3 179 59.2
Peaxi162Scf00088g00618 Petunia axillaris HOM05D003361 ORTHO05D003760 1.2e-47 194.5 300 70.3
Dinv41445 Davidia involucrata HOM05D003361 ORTHO05D003760 3.7e-44 183.0 170 57.1
TAR626G1829 Trochodendron aralioides HOM05D003361 ORTHO05D003760 1.2e-42 177.9 179 53.1
Dinv36449 Davidia involucrata HOM05D003361 ORTHO05D003760 1.6e-42 177.6 172 54.7
Haze_16605 Corylus avellana HOM05D003361 ORTHO05D003760 2.7e-42 176.8 178 52.2
Hma1.2p1_0461F.1_g157700 Hydrangea macrophylla HOM05D003361 ORTHO05D003760 1.7e-41 174.1 179 53.1
Atru.chr7.2012 Acer truncatum HOM05D003361 ORTHO05D003760 1.1e-40 171.4 171 53.2
CiPaw.01G250600 Carya illinoinensis HOM05D003361 ORTHO05D003760 1.1e-40 171.4 170 54.7
Lj4g0018391 Lotus japonicus HOM05D003361 ORTHO05D003760 1.5e-40 171.0 227 59.0
PGR031G1162 Punica granatum HOM05D003361 ORTHO05D003760 1.6e-39 167.5 169 52.7
TAR383G0111 Trochodendron aralioides HOM05D003361 ORTHO05D003760 2.8e-39 166.8 172 52.9
MELO3C023445.2 Cucumis melo HOM05D003361 ORTHO05D003760 6.2e-39 165.6 227 42.3
Prupe.3G092900 Prunus persica HOM05D003361 ORTHO05D003760 1.4e-38 164.5 170 52.4
Gohir.A08G090300 Gossypium hirsutum HOM05D003361 ORTHO05D003760 2.3e-38 163.7 170 50.6
Manes.14G119228 Manihot esculenta HOM05D003361 ORTHO05D003760 2.3e-38 163.7 169 53.3
Oeu029903.1 Olea europaea HOM05D003361 ORTHO05D003760 2.3e-38 163.7 170 52.9
Rhsim12G0189300 Rhododendron simsii HOM05D003361 ORTHO05D003760 2.3e-38 163.7 170 52.9
TPR.G7990 Trifolium pratense HOM05D003361 ORTHO05D003760 2.3e-38 163.7 180 50.0
CsaV3_7G032160 Cucumis sativus L. HOM05D003361 ORTHO05D003760 5.2e-38 162.5 179 49.2
RcHm_v2.0_Chr2g0134401 Rosa chinensis HOM05D003361 ORTHO05D003760 6.8e-38 162.2 167 52.1
SalBow7G0810 Salvia bowleyana HOM05D003361 ORTHO05D003760 6.8e-38 162.2 170 51.2
SalBow7G3482 Salvia bowleyana HOM05D003361 ORTHO05D003760 6.8e-38 162.2 170 51.2
Thecc.06G033100 Theobroma cacao HOM05D003361 ORTHO05D003760 6.8e-38 162.2 167 50.9
Nn8g39646 Nelumbo nucifera HOM05D003361 ORTHO05D003760 8.9e-38 161.8 167 52.1
Gohir.D08G101300 Gossypium hirsutum HOM05D003361 ORTHO05D003760 1.2e-37 161.4 170 50.6
Gorai.004G109300 Gossypium raimondii HOM05D003361 ORTHO05D003760 1.2e-37 161.4 170 50.6
CiPaw.02G158600 Carya illinoinensis HOM05D003361 ORTHO05D003760 1.5e-37 161.0 169 51.5
Atru.chr1.2849 Acer truncatum HOM05D003361 ORTHO05D003760 2.6e-37 160.2 170 50.6
COL.COLO4_33367 Corchorus olitorius HOM05D003361 ORTHO05D003760 2.6e-37 160.2 170 50.0
QL05p032608 Quercus lobata HOM05D003361 ORTHO05D003760 2.6e-37 160.2 169 50.9
Thecc.09G137400 Theobroma cacao HOM05D003361 ORTHO05D003760 2.6e-37 160.2 171 50.9
CANSAT11G0288 Cannabis sativa HOM05D003361 ORTHO05D003760 3.4e-37 159.8 224 40.6
Glyma.08G214500 Glycine max HOM05D003361 ORTHO05D003760 3.4e-37 159.8 170 51.2
COL.COLO4_11855 Corchorus olitorius HOM05D003361 ORTHO05D003760 4.4e-37 159.5 170 51.8
Glyma.13G163500 Glycine max HOM05D003361 ORTHO05D003760 4.4e-37 159.5 171 50.9
GSVIVG01012857001 Vitis vinifera HOM05D003361 ORTHO05D003760 4.4e-37 159.5 171 52.0
Dinv30637 Davidia involucrata HOM05D003361 ORTHO05D003760 5.8e-37 159.1 170 50.0
ClCG09G003110 Citrullus lanatus HOM05D003361 ORTHO05D003760 9.9e-37 158.3 170 52.4
Cc04_g04660 Coffea canephora HOM05D003361 ORTHO05D003760 9.9e-37 158.3 170 52.4
Lalb_Chr12g0198401 Lupinus albus HOM05D003361 ORTHO05D003760 9.9e-37 158.3 179 49.2
SGA_v2.0_scaffold37G14747 Striga asiatica HOM05D003361 ORTHO05D003760 1.3e-36 157.9 172 52.9
Lj9A497T71 Lonicera japonica HOM05D003361 ORTHO05D003760 2.2e-36 157.1 170 51.2
Psat0s571g0080 Pisum sativum HOM05D003361 ORTHO05D003760 2.2e-36 157.1 171 50.3
Psat7g257800 Pisum sativum HOM05D003361 ORTHO05D003760 2.2e-36 157.1 170 51.2
Hund00496 Selenicereus undatus HOM05D003361 ORTHO05D003760 2.2e-36 157.1 169 50.9
Nitab4.5_0009284g0020 Nicotiana tabacum HOM05D003361 ORTHO05D003760 3.7e-36 156.4 162 74.1
Phvul.010G157600 Phaseolus vulgaris HOM05D003361 ORTHO05D003760 3.7e-36 156.4 170 51.2
HPP92_017331 Vanilla planifolia HOM05D003361 ORTHO05D003760 3.7e-36 156.4 180 51.7
MSTRG.22764 Avicennia marina HOM05D003361 ORTHO05D003760 4.9e-36 156.0 169 49.7
Ca_21637_v3 Cicer arietinum L. HOM05D003361 ORTHO05D003760 8.3e-36 155.2 171 49.7
EL10Ac8g18785 Beta vulgaris HOM05D003361 ORTHO05D003760 1.1e-35 154.8 172 50.0
Glyma.07G028300 Glycine max HOM05D003361 ORTHO05D003760 1.1e-35 154.8 170 50.6
Lj3g0011414 Lotus japonicus HOM05D003361 ORTHO05D003760 1.1e-35 154.8 170 51.2
Medtr4g116170 Medicago truncatula HOM05D003361 ORTHO05D003760 1.1e-35 154.8 171 49.1
QL02p090717 Quercus lobata HOM05D003361 ORTHO05D003760 1.1e-35 154.8 171 48.5
VMungo0331G0010 Vigna mungo HOM05D003361 ORTHO05D003760 1.1e-35 154.8 163 52.1
Duzib235G0043 Durio zibethinus HOM05D003361 ORTHO05D003760 1.4e-35 154.5 169 49.7
Eucgr.J03087 Eucalyptus grandis HOM05D003361 ORTHO05D003760 1.4e-35 154.5 166 49.4
arahy.Tifrunner.gnm1.ann1.T3C7Q8 Arachis hypogaea HOM05D003361 ORTHO05D003760 1.9e-35 154.1 226 51.8
Cpa.g.sc46.67 Carica papaya HOM05D003361 ORTHO05D003760 1.9e-35 154.1 169 51.5
Ciclev10025249m.g Citrus clementina HOM05D003361 ORTHO05D003760 1.9e-35 154.1 170 50.6
MD02G1018400 Malus domestica HOM05D003361 ORTHO05D003760 1.9e-35 154.1 171 50.3
Manes.11G061100 Manihot esculenta HOM05D003361 ORTHO05D003760 1.9e-35 154.1 170 50.6
GSVIVG01017472001 Vitis vinifera HOM05D003361 ORTHO05D003760 1.9e-35 154.1 170 47.6
Glyma.17G107400 Glycine max HOM05D003361 ORTHO05D003760 2.4e-35 153.7 173 49.1
TWI12G0888 Tripterygium wilfordii HOM05D003361 ORTHO05D003760 2.4e-35 153.7 170 49.4
TWI75G0489 Tripterygium wilfordii HOM05D003361 ORTHO05D003760 2.4e-35 153.7 225 55.1
Cc06_g07660 Coffea canephora HOM05D003361 ORTHO05D003760 3.2e-35 153.3 179 49.2
MBI14_g24987_MAGBIO Magnolia biondii HOM05D003361 ORTHO05D003760 3.2e-35 153.3 170 52.4
TWI32G1011 Tripterygium wilfordii HOM05D003361 ORTHO05D003760 3.2e-35 153.3 171 50.9
TPR.G38632 Trifolium pratense HOM05D003361 ORTHO05D003760 4.1e-35 152.9 179 46.9
Nitab4.5_0002322g0060 Nicotiana tabacum HOM05D003361 ORTHO05D003760 5.4e-35 152.5 179 47.5
Phvul.003G172400 Phaseolus vulgaris HOM05D003361 ORTHO05D003760 5.4e-35 152.5 171 50.9
CSS0014218 Camellia sinensis var. sinensis HOM05D003361 ORTHO05D003760 7.1e-35 152.1 171 51.5
MD15G1162400 Malus domestica HOM05D003361 ORTHO05D003760 7.1e-35 152.1 171 50.3
FvH4_6g29180 Fragaria vesca HOM05D003361 ORTHO05D003760 9.2e-35 151.8 167 49.1
FAN09G2631 Fragaria x ananassa HOM05D003361 ORTHO05D003760 9.2e-35 151.8 167 49.1
FAN14G3167 Fragaria x ananassa HOM05D003361 ORTHO05D003760 9.2e-35 151.8 167 49.1
FAN02G1685 Fragaria x ananassa HOM05D003361 ORTHO05D003760 1.2e-34 151.4 167 49.1
FAN05G3872 Fragaria x ananassa HOM05D003361 ORTHO05D003760 1.2e-34 151.4 167 49.1
Hund21595 Selenicereus undatus HOM05D003361 ORTHO05D003760 1.2e-34 151.4 170 51.2
vmacro16874 Vaccinium macrocarpon HOM05D003361 ORTHO05D003760 1.6e-34 151.0 164 51.8
Ca_12515_v3 Cicer arietinum L. HOM05D003361 ORTHO05D003760 2.1e-34 150.6 170 49.4
Migut.I00738 Erythranthe guttata HOM05D003361 ORTHO05D003760 2.1e-34 150.6 171 49.1
AUR62011226 Chenopodium quinoa HOM05D003361 ORTHO05D003760 2.7e-34 150.2 176 48.3
AUR62020008 Chenopodium quinoa HOM05D003361 ORTHO05D003760 2.7e-34 150.2 176 47.7
Medtr4g009873 Medicago truncatula HOM05D003361 ORTHO05D003760 4.6e-34 149.4 167 49.7
arahy.Tifrunner.gnm1.ann1.NFA80P Arachis hypogaea HOM05D003361 ORTHO05D003760 7.8e-34 148.7 170 50.6
Sopen03g036300 Solanum pennellii HOM05D003361 ORTHO05D003760 7.8e-34 148.7 169 50.9
Actinidia15974 Actinidia chinensis HOM05D003361 ORTHO05D003760 1.0e-33 148.3 169 49.7
Sed0016861 Sechium edule HOM05D003361 ORTHO05D003760 1.3e-33 147.9 170 50.6
Psat1g109200 Pisum sativum HOM05D003361 ORTHO05D003760 1.7e-33 147.5 179 46.4
RcHm_v2.0_Chr2g0087081 Rosa chinensis HOM05D003361 ORTHO05D003760 2.3e-33 147.1 174 48.9
Sabra06G0044400 Salix brachista HOM05D003361 ORTHO05D003760 2.3e-33 147.1 170 51.2
Solyc03g117420.4 Solanum lycopersicum HOM05D003361 ORTHO05D003760 2.3e-33 147.1 169 50.9
Thhalv10007169m.g Eutrema salsugineum HOM05D003361 ORTHO05D003760 3.0e-33 146.7 170 48.2
Duzib160G0541 Durio zibethinus HOM05D003361 ORTHO05D003760 3.9e-33 146.4 169 47.3
Nn2g12188 Nelumbo nucifera HOM05D003361 ORTHO05D003760 3.9e-33 146.4 164 50.0
MSTRG.11160 Avicennia marina HOM05D003361 ORTHO05D003760 5.1e-33 146.0 172 50.0
Carub.0001s1551 Capsella rubella HOM05D003361 ORTHO05D003760 5.1e-33 146.0 170 50.0
Gohir.D10G079000 Gossypium hirsutum HOM05D003361 ORTHO05D003760 5.1e-33 146.0 169 49.1
Gorai.011G085800 Gossypium raimondii HOM05D003361 ORTHO05D003760 5.1e-33 146.0 169 49.1
Aqoxy7G02456 Aquilegia oxysepala HOM05D003361 ORTHO05D003760 8.6e-33 145.2 175 48.6
AT1G15740 Arabidopsis thaliana HOM05D003361 ORTHO05D003760 8.6e-33 145.2 170 49.4
Lsat_1_v5_gn_5_8861 Lactuca sativa HOM05D003361 ORTHO05D003760 8.6e-33 145.2 171 48.0
Sc08g0006030 Simmondsia chinensis HOM05D003361 ORTHO05D003760 8.6e-33 145.2 172 51.2
Gohir.A10G072100 Gossypium hirsutum HOM05D003361 ORTHO05D003760 1.1e-32 144.8 169 49.1
Prupe.7G252400 Prunus persica HOM05D003361 ORTHO05D003760 1.1e-32 144.8 171 49.1
arahy.Tifrunner.gnm1.ann1.MWAB5B Arachis hypogaea HOM05D003361 ORTHO05D003760 1.5e-32 144.4 227 55.5
arahy.Tifrunner.gnm1.ann1.H7Z4S8 Arachis hypogaea HOM05D003361 ORTHO05D003760 1.9e-32 144.1 226 55.3
AL1G27850 Arabidopsis lyrata HOM05D003361 ORTHO05D003760 2.5e-32 143.7 170 49.4
Manes.04G108700 Manihot esculenta HOM05D003361 ORTHO05D003760 2.5e-32 143.7 170 50.0
arahy.Tifrunner.gnm1.ann1.JM4LQW Arachis hypogaea HOM05D003361 ORTHO05D003760 3.3e-32 143.3 169 49.1
Sp1g14030 Schrenkiella parvula HOM05D003361 ORTHO05D003760 3.3e-32 143.3 170 48.8
CANSAT56G3261 Cannabis sativa HOM05D003361 ORTHO05D003760 4.3e-32 142.9 226 51.3
Lalb_Chr01g0012261 Lupinus albus HOM05D003361 ORTHO05D003760 4.3e-32 142.9 170 49.4
Potri.006G061700 Populus trichocarpa HOM05D003361 ORTHO05D003760 4.3e-32 142.9 168 49.4
FAN28G0525 Fragaria x ananassa HOM05D003361 ORTHO05D003760 5.6e-32 142.5 175 48.6
ATR0767G175 Amborella trichopoda HOM05D003361 ORTHO05D003760 7.3e-32 142.1 170 49.4
DCAR_025527 Daucus carota HOM05D003361 ORTHO05D003760 7.3e-32 142.1 175 45.1
THA.LOC104808198 Tarenaya hassleriana HOM05D003361 ORTHO05D003760 1.2e-31 141.4 172 46.5
Peaxi162Scf00332g00127 Petunia axillaris HOM05D003361 ORTHO05D003760 2.1e-31 140.6 167 48.5
CARHR016230 Cardamine hirsuta HOM05D003361 ORTHO05D003760 3.6e-31 139.8 170 47.6
FvH4_1g02020 Fragaria vesca HOM05D003361 ORTHO05D003760 4.7e-31 139.4 175 48.0
Aa31LG7G360 Aethionema arabicum HOM05D003361 ORTHO05D003760 6.2e-31 139.0 170 48.8
BcaC05g25516 Brassica carinata HOM05D003361 ORTHO05D003760 6.2e-31 139.0 170 48.8
CAN.G407.25 Capsicum annuum HOM05D003361 ORTHO05D003760 6.2e-31 139.0 169 47.3
THA.LOC104812464 Tarenaya hassleriana HOM05D003361 ORTHO05D003760 8.1e-31 138.7 170 48.2
BraA06t24343Z Brassica rapa HOM05D003361 ORTHO05D003760 1.8e-30 137.5 170 48.2
A06p11730 Brassica napus HOM05D003361 ORTHO05D003760 3.1e-30 136.7 170 48.2
HanXRQChr17g0570311 Helianthus annuus HOM05D003361 ORTHO05D003760 3.1e-30 136.7 170 45.9
Duzib187G1093 Durio zibethinus HOM05D003361 ORTHO05D003760 5.2e-30 136.0 152 67.1
CDE05G0968 Ceratophyllum demersum HOM05D003361 ORTHO05D003760 6.8e-30 135.6 170 48.8
Nitab4.5_0001017g0020 Nicotiana tabacum HOM05D003361 ORTHO05D003760 6.8e-30 135.6 168 47.6
C05p13880 Brassica napus HOM05D003361 ORTHO05D003760 1.2e-29 134.8 170 47.6
BolC5t30122H Brassica oleracea HOM05D003361 ORTHO05D003760 1.2e-29 134.8 170 47.6
ECA246G4877 Erigeron canadensis HOM05D003361 ORTHO05D003760 2.0e-29 134.0 172 48.8
SHI02098 Sapria himalayana HOM05D003361 ORTHO05D003760 2.0e-29 134.0 178 44.4
FAN19G1251 Fragaria x ananassa HOM05D002026 ORTHO05D002291 2.9e-28 130.2 168 47.0
MD17G1217000 Malus domestica HOM05D003361 ORTHO05D003760 6.4e-28 129.0 152 65.8
Lsat_1_v5_gn_4_88160 Lactuca sativa HOM05D003361 ORTHO05D003988 1.9e-27 127.5 109 58.7
SEGI_28212 Sequoiadendron giganteum HOM05D003361 ORTHO05D003760 1.9e-27 127.5 176 41.5
Ah.09g224100 Amaranthus hybridus HOM05D003361 ORTHO05D003760 4.2e-27 126.3 171 44.4
Duzib150G0304 Durio zibethinus HOM05D003361 ORTHO05D003760 4.2e-27 126.3 104 57.7
Os02g0613200 Oryza sativa ssp. japonica HOM05D003361 ORTHO05D003760 4.6e-26 122.9 174 44.8
PSO017G3211 Papaver somniferum HOM05D003361 ORTHO05D003760 1.3e-25 121.3 180 42.2
PSO170G6803 Papaver somniferum HOM05D003361 ORTHO05D003760 1.7e-25 120.9 101 56.4
Zm00001eb078100 Zea mays HOM05D003361 ORTHO05D003760 3.0e-25 120.2 173 42.2
Os04g0503500 Oryza sativa ssp. japonica HOM05D003361 ORTHO05D003760 1.1e-24 118.2 174 43.1
Zm00001eb247040 Zea mays HOM05D003361 ORTHO05D003760 5.6e-24 115.9 167 43.7
Pp3c4_3150 Physcomitrium patens HOM05D003361 ORTHO05D003760 3.6e-23 113.2 173 41.0
Lj3g0027196 Lotus japonicus HOM05D003361 ORTHO05D003760 4.8e-23 112.8 107 51.4
Sed0010441 Sechium edule HOM05D003361 ORTHO05D003760 3.1e-22 110.2 234 45.3
HanXRQChr09g0274781 Helianthus annuus HOM05D003361 ORTHO05D003760 1.5e-21 107.8 170 40.6
SMO200G0229 Selaginella moellendorffii HOM05D003361 ORTHO05D003760 1.5e-21 107.8 181 37.6
arahy.Tifrunner.gnm1.ann1.TB3UR8 Arachis hypogaea HOM05D003361 ORTHO05D003760 2.0e-21 107.5 194 36.1
arahy.Tifrunner.gnm1.ann1.YII6YD Arachis hypogaea HOM05D003361 ORTHO05D003760 2.0e-21 107.5 194 36.1
AagrBONN_evm.TU.Sc2ySwM_362.1382 Anthoceros agrestis HOM05D003361 ORTHO05D003760 2.7e-18 97.1 94 47.9
Glyma.13G367200 Glycine max HOM05D003361 ORTHO05D003760 2.7e-18 97.1 106 48.1
Pp3c8_1510 Physcomitrium patens HOM05D003361 ORTHO05D003760 4.6e-18 96.3 174 36.2
Mapoly0032s0095 Marchantia polymorpha HOM05D003361 ORTHO05D003760 6.0e-18 95.9 157 42.7
unitig_699.g19089 Utricularia gibba HOM05D003361 ORTHO05D003760 8.7e-17 92.0 179 35.2
CAN.G509.10 Capsicum annuum HOM05D003361 ORTHO05D003760 7.3e-16 89.0 59 71.2
Psat0s520g0120 Pisum sativum HOM05D003361 ORTHO05D003760 3.1e-14 83.6 67 56.7
Glyma.15G006200 Glycine max HOM05D003361 ORTHO05D003760 3.8e-12 76.6 96 44.8
SGA_v2.0_scaffold11G05885 Striga asiatica HOM05D003361 ORTHO05D003760 3.3e-08 63.5 149 37.6
Oeu027837.1 Olea europaea HOM05D003361 ORTHO05D003760 2.1e-07 60.8 103 67.0


User provided reference genes

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