Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0008535g0030 Nicotiana tabacum HOM05D000435 ORTHO05D013824 6.1e-79 297.4 145 100.0
CAN.G78.6 Capsicum annuum HOM05D000435 ORTHO05D013824 9.9e-29 130.6 67 97.0
CAN.G85.21 Capsicum annuum HOM05D000435 ORTHO05D016180 9.9e-29 130.6 67 97.0
Nitab4.5_0000085g0100 Nicotiana tabacum HOM05D000435 ORTHO05D013824 6.4e-28 127.9 67 92.5
CAN.G1109.6 Capsicum annuum HOM05D000435 ORTHO05D016180 4.2e-27 125.2 107 63.6
CAN.G1.3 Capsicum annuum HOM05D000435 ORTHO05D016180 2.7e-26 122.5 67 91.0
Nitab4.5_0001152g0690 Nicotiana tabacum HOM05D000435 ORTHO05D013824 4.6e-26 121.7 67 89.6
CAN.G72.11 Capsicum annuum HOM05D000435 ORTHO05D013824 7.9e-26 120.9 66 92.4
CAN.G1485.3 Capsicum annuum HOM05D000435 ORTHO05D013824 1.3e-25 120.2 67 89.6
CAN.G623.32 Capsicum annuum HOM05D000435 ORTHO05D000430 1.1e-24 117.1 67 88.1
Peaxi162Scf00139g01031 Petunia axillaris HOM05D000435 ORTHO05D000430 1.5e-24 116.7 67 85.1
Solyc07g065770.3 Solanum lycopersicum HOM05D000435 ORTHO05D013824 1.3e-23 113.6 67 86.6
Nitab4.5_0000172g2200 Nicotiana tabacum HOM05D000435 ORTHO05D013824 1.6e-23 113.2 105 58.1
Nitab4.5_0005853g0060 Nicotiana tabacum HOM05D068302 ORTHO05D013824 4.8e-23 111.7 64 89.1
Nitab4.5_0000152g0410 Nicotiana tabacum HOM05D000435 ORTHO05D000430 1.5e-21 106.7 68 80.9
Sopen07g033980 Solanum pennellii HOM05D003572 ORTHO05D004118 1.5e-21 106.7 64 85.9
CAN.G131.13 Capsicum annuum HOM05D044362 ORTHO05D016180 7.6e-21 104.4 66 81.8
Nitab4.5_0010643g0020 Nicotiana tabacum HOM05D000435 ORTHO05D000430 1.0e-20 104.0 68 79.4
Dinv10357 Davidia involucrata HOM05D000435 ORTHO05D000430 7.1e-19 97.8 67 74.6
DCAR_017069 Daucus carota HOM05D000435 ORTHO05D000430 5.1e-17 91.7 68 73.5
CSS0004404 Camellia sinensis var. sinensis HOM05D000435 ORTHO05D000430 6.7e-17 91.3 70 72.9
CSS0032781 Camellia sinensis var. sinensis HOM05D000435 ORTHO05D000430 6.7e-17 91.3 70 72.9
Nitab4.5_0000172g0070 Nicotiana tabacum HOM05D000435 ORTHO05D016180 6.7e-17 91.3 73 65.8
Prupe.6G027000 Prunus persica HOM05D000435 ORTHO05D000430 8.7e-17 90.9 67 68.7
Glyma.14G012000 Glycine max HOM05D000435 ORTHO05D000430 1.5e-16 90.1 67 67.2
Gohir.A08G025300 Gossypium hirsutum HOM05D000435 ORTHO05D000430 1.5e-16 90.1 69 71.0
Gohir.D08G035800 Gossypium hirsutum HOM05D000435 ORTHO05D000430 1.5e-16 90.1 69 71.0
Gorai.004G033800 Gossypium raimondii HOM05D000435 ORTHO05D000430 1.5e-16 90.1 69 71.0
Psat0s4150g0240 Pisum sativum HOM05D000435 ORTHO05D000430 1.5e-16 90.1 68 69.1
QL08p003237 Quercus lobata HOM05D000435 ORTHO05D000430 1.5e-16 90.1 67 68.7
Atru.chr2.3749 Acer truncatum HOM05D000435 ORTHO05D000430 1.9e-16 89.7 67 70.1
Atru.chr2.3763 Acer truncatum HOM05D000435 ORTHO05D000430 1.9e-16 89.7 67 70.1
CAN.G1.23 Capsicum annuum HOM05D000435 ORTHO05D016180 1.9e-16 89.7 71 64.8
Nitab4.5_0001152g0130 Nicotiana tabacum HOM05D000435 ORTHO05D013824 1.9e-16 89.7 55 81.8
MD11G1036200 Malus domestica HOM05D000435 ORTHO05D000430 2.5e-16 89.4 67 67.2
Duzib170G0379 Durio zibethinus HOM05D000435 ORTHO05D000430 3.3e-16 89.0 67 68.7
RcHm_v2.0_Chr5g0075901 Rosa chinensis HOM05D000435 ORTHO05D000430 3.3e-16 89.0 68 67.6
Thecc.07G008500 Theobroma cacao HOM05D000435 ORTHO05D000430 4.3e-16 88.6 67 70.1
Ca_06413_v3 Cicer arietinum L. HOM05D000435 ORTHO05D000430 5.7e-16 88.2 68 67.6
Manes.03G143200 Manihot esculenta HOM05D000435 ORTHO05D000430 9.7e-16 87.4 67 70.1
Nitab4.5_0001152g0100 Nicotiana tabacum HOM05D000435 ORTHO05D016180 1.3e-15 87.0 52 82.7
Nitab4.5_0002312g0050 Nicotiana tabacum HOM05D000435 ORTHO05D013824 1.3e-15 87.0 51 82.4
Glyma.02G302200 Glycine max HOM05D000435 ORTHO05D000430 1.6e-15 86.7 67 64.2
LjContig00081g0009877 Lotus japonicus HOM05D000435 ORTHO05D000430 1.6e-15 86.7 67 65.7
Lalb_Chr10g0107501 Lupinus albus HOM05D000435 ORTHO05D000430 1.6e-15 86.7 67 67.2
Sabra16G0243600 Salix brachista HOM05D000435 ORTHO05D000430 2.2e-15 86.3 67 64.2
PGSC0003DMG400022268 Solanum tuberosum HOM05D003572 ORTHO05D004118 2.2e-15 86.3 46 93.5
Cpa.g.sc12.135 Carica papaya HOM05D000435 ORTHO05D000430 3.7e-15 85.5 64 71.9
Lj1A893T55 Lonicera japonica HOM05D000435 ORTHO05D000430 8.2e-15 84.3 67 67.2
Nitab4.5_0008300g0010 Nicotiana tabacum HOM05D000435 ORTHO05D013824 8.2e-15 84.3 41 97.6
TAR627G0575 Trochodendron aralioides HOM05D003572 ORTHO05D004118 8.2e-15 84.3 67 67.2
GSVIVG01014733001 Vitis vinifera HOM05D000435 ORTHO05D000430 8.2e-15 84.3 67 62.7
Potri.011G094650 Populus trichocarpa HOM05D000435 ORTHO05D000430 1.4e-14 83.6 68 64.7
Cfa016927 Carpinus fangiana HOM05D000435 ORTHO05D000430 1.8e-14 83.2 67 68.7
DCAR_013252 Daucus carota HOM05D000435 ORTHO05D000430 1.8e-14 83.2 109 48.6
Sc03g0011590 Simmondsia chinensis HOM05D000435 ORTHO05D000430 1.8e-14 83.2 67 65.7
Potri.001G370600 Populus trichocarpa HOM05D000435 ORTHO05D000430 2.4e-14 82.8 68 64.7
Phvul.008G280800 Phaseolus vulgaris HOM05D000435 ORTHO05D000430 3.1e-14 82.4 67 59.7
CiPaw.11G206300 Carya illinoinensis HOM05D000435 ORTHO05D000430 5.3e-14 81.6 67 65.7
Ciclev10010223m.g Citrus clementina HOM05D000435 ORTHO05D000430 5.3e-14 81.6 69 66.7
FvH4_3g42410 Fragaria vesca HOM05D000435 ORTHO05D000430 5.3e-14 81.6 68 61.8
FAN11G3608 Fragaria x ananassa HOM05D000435 ORTHO05D000430 5.3e-14 81.6 68 61.8
FAN28G0967 Fragaria x ananassa HOM05D000435 ORTHO05D000430 5.3e-14 81.6 68 61.8
TPR.G1291 Trifolium pratense HOM05D000435 ORTHO05D000430 5.3e-14 81.6 68 61.8
VMungo0647G0856 Vigna mungo HOM05D000435 ORTHO05D000430 6.9e-14 81.3 67 59.7
Haze_09858 Corylus avellana HOM05D000435 ORTHO05D000430 2.0e-13 79.7 68 67.6
FAN25G2805 Fragaria x ananassa HOM05D000435 ORTHO05D000430 2.0e-13 79.7 58 65.5
TWI39G0143 Tripterygium wilfordii HOM05D000435 ORTHO05D000430 2.6e-13 79.3 67 65.7
COL.COLO4_07733 Corchorus olitorius HOM05D003572 ORTHO05D004118 3.4e-13 79.0 66 68.2
Medtr5g096390 Medicago truncatula HOM05D000435 ORTHO05D000430 7.7e-13 77.8 68 64.7
FAN16G3565 Fragaria x ananassa HOM05D000435 ORTHO05D000430 1.0e-12 77.4 68 58.8
AUR62017136 Chenopodium quinoa HOM05D000435 ORTHO05D000430 1.3e-12 77.0 66 63.6
SGA_v2.0_scaffold420G51405 Striga asiatica HOM05D004291 ORTHO05D005620 1.3e-12 77.0 62 62.9
arahy.Tifrunner.gnm1.ann1.64V7P3 Arachis hypogaea HOM05D000435 ORTHO05D000430 2.2e-12 76.3 70 61.4
arahy.Tifrunner.gnm1.ann1.D8MFXN Arachis hypogaea HOM05D000435 ORTHO05D000430 1.9e-11 73.2 72 58.3
AUR62035671 Chenopodium quinoa HOM05D000435 ORTHO05D000430 1.9e-11 73.2 59 64.4
EL10Ac4g07534 Beta vulgaris HOM05D000435 ORTHO05D000430 2.5e-11 72.8 67 59.7
Oeu005470.2 Olea europaea HOM05D000435 ORTHO05D000430 2.5e-11 72.8 49 77.6
Migut.M01629 Erythranthe guttata HOM05D000435 ORTHO05D000430 7.2e-11 71.2 67 61.2
SGA_v2.0_scaffold171G38846 Striga asiatica HOM05D000435 ORTHO05D000430 7.2e-11 71.2 49 69.4
TPR.G1281 Trifolium pratense HOM05D000435 ORTHO05D013824 1.2e-10 70.5 49 69.4
Eucgr.F03676 Eucalyptus grandis HOM05D000435 ORTHO05D000430 2.1e-10 69.7 67 49.3
ECA236G1471 Erigeron canadensis HOM05D000435 ORTHO05D000430 2.7e-10 69.3 63 58.7
THA.LOC104815690 Tarenaya hassleriana HOM05D000435 ORTHO05D000430 2.7e-10 69.3 50 76.0
Actinidia03625 Actinidia chinensis HOM05D000435 ORTHO05D000430 3.6e-10 68.9 63 61.9
CANSAT11G0821 Cannabis sativa HOM05D000435 ORTHO05D000430 6.1e-10 68.2 68 61.8
vmacro09627 Vaccinium macrocarpon HOM05D000435 ORTHO05D000430 1.4e-09 67.0 67 58.2
Ca_12447_v3 Cicer arietinum L. HOM05D000435 ORTHO05D000430 3.0e-09 65.9 64 60.9
Nitab4.5_0002072g0130 Nicotiana tabacum HOM05D000435 ORTHO05D013824 5.1e-09 65.1 40 77.5
PSO541G1261 Papaver somniferum HOM05D000435 ORTHO05D000430 6.7e-09 64.7 69 52.2
PSO675G1718 Papaver somniferum HOM05D000435 ORTHO05D000430 6.7e-09 64.7 69 52.2
Lsat_1_v5_gn_7_114141 Lactuca sativa HOM05D000435 ORTHO05D000430 8.8e-09 64.3 69 56.5
Sed0013125 Sechium edule HOM05D000435 ORTHO05D000430 8.8e-09 64.3 67 52.2
Aqoxy3G03979 Aquilegia oxysepala HOM05D000435 ORTHO05D000430 4.3e-08 62.0 67 47.8
Nn2g15498 Nelumbo nucifera HOM05D000435 ORTHO05D000430 5.7e-08 61.6 67 50.7
Nitab4.5_0000085g0110 Nicotiana tabacum HOM05D000435 ORTHO05D013824 3.7e-07 58.9 31 90.3
CARHR087810 Cardamine hirsuta HOM05D000435 ORTHO05D000430 6.3e-07 58.2 47 66.0
Phvul.006G059212 Phaseolus vulgaris HOM05D000435 ORTHO05D000430 8.2e-07 57.8 67 50.7
A01p40340 Brassica napus HOM05D000435 ORTHO05D000430 1.1e-06 57.4 47 66.0
BraA01t04069Z Brassica rapa HOM05D000435 ORTHO05D000430 1.1e-06 57.4 47 66.0
Sp3g11390 Schrenkiella parvula HOM05D000435 ORTHO05D000430 1.1e-06 57.4 47 66.0
VMungo0540G1677 Vigna mungo HOM05D003572 ORTHO05D004118 1.1e-06 57.4 67 49.3
Thhalv10020198m.g Eutrema salsugineum HOM05D000435 ORTHO05D000430 3.1e-06 55.8 47 63.8
C01p51870 Brassica napus HOM05D000435 ORTHO05D000430 4.1e-06 55.5 47 63.8
BolC1t05135H Brassica oleracea HOM05D000435 ORTHO05D000430 4.1e-06 55.5 47 63.8
FAN21G0356 Fragaria x ananassa HOM05D000435 ORTHO05D000430 4.1e-06 55.5 47 55.3
BcaB04g21003 Brassica carinata HOM05D000435 ORTHO05D000430 5.3e-06 55.1 47 63.8
Glyma.18G074800 Glycine max HOM05D000435 ORTHO05D000430 5.3e-06 55.1 67 47.8
AL3G24980 Arabidopsis lyrata HOM05D000435 ORTHO05D000430 6.9e-06 54.7 47 63.8
Carub.0003s1257 Capsella rubella HOM05D000435 ORTHO05D000430 6.9e-06 54.7 47 63.8
Aa31LG8G420 Aethionema arabicum HOM05D000435 ORTHO05D000430 9.1e-06 54.3 60 51.7


User provided reference genes

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