Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0008523g0050 Nicotiana tabacum HOM05D005251 ORTHO05D006680 7.6e-177 623.6 294 100.0
Peaxi162Scf00498g00321 Petunia axillaris HOM05D005251 ORTHO05D006680 4.3e-148 528.1 369 71.8
Nitab4.5_0000540g0310 Nicotiana tabacum HOM05D005251 ORTHO05D006680 2.9e-136 488.8 337 73.0
PGSC0003DMG400000278 Solanum tuberosum HOM05D005251 ORTHO05D006680 6.7e-125 451.1 392 61.2
CAN.G1241.24 Capsicum annuum HOM05D005251 ORTHO05D006680 4.0e-117 425.2 392 58.4
Sopen12g003800 Solanum pennellii HOM05D005251 ORTHO05D006680 2.7e-105 386.0 338 60.7
Solyc12g008870.1 Solanum lycopersicum HOM05D005251 ORTHO05D006680 1.1e-103 380.6 338 60.7
Cc06_g11450 Coffea canephora HOM05D005251 ORTHO05D006680 3.0e-101 372.5 401 49.4
Dinv36771 Davidia involucrata HOM05D005251 ORTHO05D006680 5.2e-101 371.7 401 49.9
SGA_v2.0_scaffold21G09390 Striga asiatica HOM05D005251 ORTHO05D006680 8.3e-99 364.4 400 50.2
MSTRG.10560 Avicennia marina HOM05D005251 ORTHO05D006680 1.2e-97 360.5 397 49.6
Oeu018416.2 Olea europaea HOM05D005251 ORTHO05D006680 5.0e-96 355.1 393 49.1
CSS0048193 Camellia sinensis var. sinensis HOM05D005251 ORTHO05D006680 5.6e-95 351.7 399 48.9
GSVIVG01015197001 Vitis vinifera HOM05D005251 ORTHO05D006680 7.3e-95 351.3 401 47.4
CSS0047543 Camellia sinensis var. sinensis HOM05D005251 ORTHO05D006680 2.8e-94 349.4 399 48.6
Lj4A303G24 Lonicera japonica HOM05D005251 ORTHO05D006680 1.4e-93 347.1 422 47.4
MD15G1207600 Malus domestica HOM05D005251 ORTHO05D006680 5.2e-93 345.1 400 48.0
Ciclev10010506m.g Citrus clementina HOM05D005251 ORTHO05D006680 4.4e-92 342.0 398 46.7
Prupe.7G209200 Prunus persica HOM05D005251 ORTHO05D006680 2.0e-89 333.2 401 47.1
COL.COLO4_18196 Corchorus olitorius HOM05D005251 ORTHO05D006680 3.5e-89 332.4 398 44.7
Eucgr.C00887 Eucalyptus grandis HOM05D005251 ORTHO05D006680 6.0e-89 331.6 397 47.1
Rhsim05G0020500 Rhododendron simsii HOM05D005251 ORTHO05D006680 1.0e-88 330.9 400 46.5
Thecc.09G088600 Theobroma cacao HOM05D005251 ORTHO05D006680 1.7e-88 330.1 401 45.1
ClCG03G015560 Citrullus lanatus HOM05D005251 ORTHO05D006680 2.3e-88 329.7 401 45.4
Actinidia39715 Actinidia chinensis HOM05D005251 ORTHO05D006680 3.9e-88 328.9 396 46.7
Migut.L01497 Erythranthe guttata HOM05D005251 ORTHO05D006680 8.6e-88 327.8 399 45.9
PGR142G3350 Punica granatum HOM05D005251 ORTHO05D006680 8.6e-88 327.8 396 47.5
Gohir.A06G072900 Gossypium hirsutum HOM05D005251 ORTHO05D006680 1.1e-87 327.4 401 44.9
Gorai.010G083200 Gossypium raimondii HOM05D005251 ORTHO05D006680 1.5e-87 327.0 401 45.1
MD02G1080200 Malus domestica HOM05D005251 ORTHO05D006680 1.9e-87 326.6 401 46.4
TAR624G0724 Trochodendron aralioides HOM05D005251 ORTHO05D006680 3.3e-87 325.9 401 44.6
CiPaw.03G215300 Carya illinoinensis HOM05D005251 ORTHO05D006680 4.3e-87 325.5 399 45.6
CsaV3_1G040480 Cucumis sativus L. HOM05D005251 ORTHO05D006680 5.6e-87 325.1 401 44.9
Glyma.13G104400 Glycine max HOM05D005251 ORTHO05D006680 7.3e-87 324.7 394 47.0
MELO3C015476.2 Cucumis melo HOM05D005251 ORTHO05D006680 1.2e-86 323.9 401 44.9
vmacro17241 Vaccinium macrocarpon HOM05D005251 ORTHO05D006680 2.1e-86 323.2 400 46.2
TWI34G0442 Tripterygium wilfordii HOM05D005251 ORTHO05D006680 2.3e-85 319.7 400 45.8
AUR62033961 Chenopodium quinoa HOM05D005251 ORTHO05D006680 3.1e-85 319.3 398 45.5
HanXRQChr06g0178551 Helianthus annuus HOM05D005251 ORTHO05D006680 4.0e-85 318.9 396 47.7
Manes.03G034200 Manihot esculenta HOM05D005251 ORTHO05D006680 1.2e-84 317.4 399 44.6
arahy.Tifrunner.gnm1.ann1.Y01GTZ Arachis hypogaea HOM05D005251 ORTHO05D006680 2.6e-84 316.2 396 45.5
Ah.09g228240 Amaranthus hybridus HOM05D005251 ORTHO05D006680 1.7e-83 313.5 398 44.7
AUR62029068 Chenopodium quinoa HOM05D005251 ORTHO05D006680 1.7e-83 313.5 398 45.2
Lalb_Chr12g0199791 Lupinus albus HOM05D005251 ORTHO05D006680 1.7e-83 313.5 399 46.1
Cfa003082 Carpinus fangiana HOM05D005251 ORTHO05D006680 2.2e-83 313.2 401 45.4
Gohir.D06G071400 Gossypium hirsutum HOM05D005251 ORTHO05D006680 4.9e-83 312.0 439 41.2
Potri.006G152100 Populus trichocarpa HOM05D005251 ORTHO05D006680 4.9e-83 312.0 401 43.9
Nn8g38856 Nelumbo nucifera HOM05D005251 ORTHO05D006680 1.1e-82 310.8 394 44.7
Phvul.003G136700 Phaseolus vulgaris HOM05D005251 ORTHO05D006680 1.4e-82 310.5 394 44.2
RcHm_v2.0_Chr2g0093421 Rosa chinensis HOM05D005251 ORTHO05D006680 1.9e-82 310.1 400 43.8
VMungo1215G2738 Vigna mungo HOM05D005251 ORTHO05D006680 3.2e-82 309.3 394 43.9
FvH4_1g07540 Fragaria vesca HOM05D005251 ORTHO05D006680 4.1e-82 308.9 400 44.8
FAN19G0073 Fragaria x ananassa HOM05D005251 ORTHO05D006680 4.1e-82 308.9 400 44.8
FAN23G1060 Fragaria x ananassa HOM05D005251 ORTHO05D006680 5.4e-82 308.5 400 44.2
CANSAT56G1459 Cannabis sativa HOM05D005251 ORTHO05D006680 7.1e-82 308.1 400 43.0
Atru.BG.14.p Acer truncatum HOM05D005251 ORTHO05D006680 9.2e-82 307.8 272 57.0
EL10Ac8g19209 Beta vulgaris HOM05D005251 ORTHO05D006680 1.6e-81 307.0 398 44.0
unitig_8.g4690 Utricularia gibba HOM05D005251 ORTHO05D006680 3.5e-81 305.8 281 55.9
FAN28G0072 Fragaria x ananassa HOM05D005251 ORTHO05D006680 4.6e-81 305.4 406 43.8
FAN26G1479 Fragaria x ananassa HOM05D005251 ORTHO05D006680 1.7e-80 303.5 415 43.1
Lsat_1_v5_gn_8_87701 Lactuca sativa HOM05D005251 ORTHO05D006680 2.3e-80 303.1 396 45.5
Lj4g0006207 Lotus japonicus HOM05D005251 ORTHO05D006680 2.3e-80 303.1 400 45.0
TPR.G9472 Trifolium pratense HOM05D005251 ORTHO05D006680 3.0e-80 302.8 396 44.4
FAN26G3339 Fragaria x ananassa HOM05D005251 ORTHO05D006680 6.6e-80 301.6 415 42.9
QL02p062545 Quercus lobata HOM05D005251 ORTHO05D006680 8.6e-80 301.2 279 54.8
Sed0019984 Sechium edule HOM05D005251 ORTHO05D006680 1.5e-79 300.4 277 54.9
Atru.chr7.1595 Acer truncatum HOM05D005251 ORTHO05D006680 1.2e-78 297.4 343 47.8
Cpa.g.sc61.41 Carica papaya HOM05D005251 ORTHO05D006680 1.2e-78 297.4 396 42.7
Haze_25916 Corylus avellana HOM05D005251 ORTHO05D006680 3.6e-78 295.8 395 44.3
Duzib150G0576 Durio zibethinus HOM05D005251 ORTHO05D006680 4.7e-78 295.4 348 45.7
Sc18g0002110 Simmondsia chinensis HOM05D005251 ORTHO05D006680 8.1e-78 294.7 280 52.9
Glyma.17G054700 Glycine max HOM05D005251 ORTHO05D006680 3.1e-77 292.7 275 54.9
Sabra06G0120400 Salix brachista HOM05D005251 ORTHO05D006680 5.2e-77 292.0 397 42.8
PSO210G7113 Papaver somniferum HOM05D005251 ORTHO05D006680 6.8e-77 291.6 393 41.7
MBI04_g31157_MAGBIO Magnolia biondii HOM05D005251 ORTHO05D006680 3.4e-76 289.3 402 40.3
CARHR270650 Cardamine hirsuta HOM05D005251 ORTHO05D006680 7.6e-76 288.1 397 43.6
PSO210G1153 Papaver somniferum HOM05D005251 ORTHO05D006680 1.7e-75 287.0 393 41.2
Medtr4g126260 Medicago truncatula HOM05D005251 ORTHO05D006680 2.9e-75 286.2 402 43.8
ECA232G2798 Erigeron canadensis HOM05D005251 ORTHO05D006680 3.8e-75 285.8 282 54.6
Os09g0364000 Oryza sativa ssp. japonica HOM05D005251 ORTHO05D006680 1.9e-74 283.5 399 40.9
Sp6g18620 Schrenkiella parvula HOM05D005251 ORTHO05D006680 3.2e-74 282.7 400 42.5
BcaB08g36046 Brassica carinata HOM05D005251 ORTHO05D006680 5.4e-74 282.0 397 43.1
BcaC04g20043 Brassica carinata HOM05D005251 ORTHO05D006680 7.1e-74 281.6 397 42.8
C09p48540 Brassica napus HOM05D005251 ORTHO05D006680 7.1e-74 281.6 397 42.8
BolC9t57695H Brassica oleracea HOM05D005251 ORTHO05D006680 7.1e-74 281.6 397 42.8
BraA10t43510Z Brassica rapa HOM05D005251 ORTHO05D006680 1.6e-73 280.4 394 42.6
Thhalv10013022m.g Eutrema salsugineum HOM05D005251 ORTHO05D006680 1.6e-73 280.4 397 42.6
THA.LOC104817759 Tarenaya hassleriana HOM05D005251 ORTHO05D006680 1.6e-73 280.4 396 41.2
A10p14170 Brassica napus HOM05D005251 ORTHO05D006680 2.1e-73 280.0 394 42.6
Carub.0008s1736 Capsella rubella HOM05D005251 ORTHO05D006680 6.0e-73 278.5 397 42.6
AL8G32750 Arabidopsis lyrata HOM05D005251 ORTHO05D006680 3.0e-72 276.2 398 42.2
Aqoxy7G04044 Aquilegia oxysepala HOM05D005251 ORTHO05D006680 8.6e-72 274.6 400 39.0
AT5G56900 Arabidopsis thaliana HOM05D005251 ORTHO05D006680 2.5e-71 273.1 398 42.0
Psat4g015200 Pisum sativum HOM05D005251 ORTHO05D006680 9.6e-71 271.2 281 54.4
Ca_21279_v3 Cicer arietinum L. HOM05D005251 ORTHO05D006680 6.2e-70 268.5 280 52.1
Aa31LG3G12780 Aethionema arabicum HOM05D005251 ORTHO05D006680 5.8e-68 261.9 403 40.7
Zm00001eb311020 Zea mays HOM05D005251 ORTHO05D006680 2.5e-63 246.5 345 41.4
ATR0789G159 Amborella trichopoda HOM05D005251 ORTHO05D006680 4.9e-51 205.7 356 37.1
Pp3c16_14300 Physcomitrium patens HOM05D005251 ORTHO05D006680 1.3e-43 181.0 432 30.3
SMO273G0018 Selaginella moellendorffii HOM05D005251 ORTHO05D006680 7.1e-42 175.3 432 30.6
SEGI_26696 Sequoiadendron giganteum HOM05D005251 ORTHO05D006680 3.5e-41 172.9 257 38.1
SMO147G0126 Selaginella moellendorffii HOM05D005251 ORTHO05D006680 4.6e-41 172.6 432 30.1
Sopen05g023240 Solanum pennellii HOM05D005251 ORTHO05D006680 5.1e-40 169.1 93 87.1
Mapoly0009s0116 Marchantia polymorpha HOM05D005251 ORTHO05D006680 1.5e-36 157.5 439 28.5
arahy.Tifrunner.gnm1.ann1.BFBS1X Arachis hypogaea HOM05D005251 ORTHO05D006680 6.9e-29 132.1 98 64.3
Solyc05g032650.3 Solanum lycopersicum HOM05D005251 ORTHO05D006680 1.6e-25 120.9 124 52.4
CBR_g54012 Chara braunii HOM05D005251 ORTHO05D006680 3.3e-23 113.2 518 22.8
VMungo1383G3543 Vigna mungo HOM05D005251 ORTHO05D006680 2.9e-19 100.1 189 35.4
AagrBONN_evm.TU.Sc2ySwM_228.1764 Anthoceros agrestis HOM05D005251 ORTHO05D006680 3.0e-16 90.1 254 28.7
HPP92_009144 Vanilla planifolia HOM05D005251 ORTHO05D006680 8.8e-16 88.6 215 29.8
MCO07G467 Micromonas commoda HOM05D005251 ORTHO05D006680 2.6e-12 77.0 268 26.1
Duzib168G1322 Durio zibethinus HOM05D005251 ORTHO05D006680 4.5e-12 76.3 149 32.9
Cre07.g338900 Chlamydomonas reinhardtii HOM05D005251 ORTHO05D006680 1.7e-11 74.3 98 36.7
Nitab4.5_0000540g0330 Nicotiana tabacum HOM05D005251 ORTHO05D006680 3.8e-11 73.2 33 97.0
PRCOL_00000275 Prasinoderma coloniale HOM05D005251 ORTHO05D006680 6.5e-11 72.4 109 34.9
vmacro17238 Vaccinium macrocarpon HOM05D005251 ORTHO05D006680 9.4e-10 68.6 92 41.3
CANSAT11G0466 Cannabis sativa HOM05D003636 ORTHO05D005160 1.8e-08 64.3 90 32.2
Glyma.10G264200 Glycine max HOM05D003636 ORTHO05D005160 8.8e-08 62.0 192 29.2
Ca_11092_v3 Cicer arietinum L. HOM05D003636 ORTHO05D005160 3.3e-07 60.1 89 32.6
Psat0s986g0040 Pisum sativum HOM05D003636 ORTHO05D005160 4.4e-07 59.7 87 34.5
TPR.G13854 Trifolium pratense HOM05D003636 ORTHO05D005160 4.4e-07 59.7 118 30.5
Ca_11090_v3 Cicer arietinum L. HOM05D003636 ORTHO05D005160 5.7e-07 59.3 89 32.6
Glyma.20G126100 Glycine max HOM05D003636 ORTHO05D005160 5.7e-07 59.3 87 33.3
Aa31LG2G11570 Aethionema arabicum HOM05D003636 ORTHO05D005160 7.5e-07 58.9 87 31.0
Phvul.007G037800 Phaseolus vulgaris HOM05D003636 ORTHO05D005160 1.3e-06 58.2 190 25.8
unitig_736.g22446 Utricularia gibba HOM05D003636 ORTHO05D005160 1.3e-06 58.2 157 25.5
Gohir.A06G066800 Gossypium hirsutum HOM05D003636 ORTHO05D005160 1.7e-06 57.8 87 29.9
Gohir.D06G065300 Gossypium hirsutum HOM05D003636 ORTHO05D005160 1.7e-06 57.8 87 29.9
Gorai.010G076500 Gossypium raimondii HOM05D003636 ORTHO05D005160 1.7e-06 57.8 87 29.9
ECA233G4087 Erigeron canadensis HOM05D003636 ORTHO05D005160 2.2e-06 57.4 209 22.5
Manes.02G210300 Manihot esculenta HOM05D003636 ORTHO05D005160 2.2e-06 57.4 87 28.7
arahy.Tifrunner.gnm1.ann1.7RJ7GD Arachis hypogaea HOM05D003636 ORTHO05D005160 2.8e-06 57.0 87 32.2
arahy.Tifrunner.gnm1.ann1.T9EQBK Arachis hypogaea HOM05D003636 ORTHO05D005160 2.8e-06 57.0 87 32.2
Thhalv10023321m.g Eutrema salsugineum HOM05D003636 ORTHO05D005160 2.8e-06 57.0 87 29.9
VMungo0720G2747 Vigna mungo HOM05D003636 ORTHO05D005160 2.8e-06 57.0 118 29.7
CDE06G0563 Ceratophyllum demersum HOM05D003636 ORTHO05D005160 3.7e-06 56.6 147 26.5
Lalb_Chr21g0308481 Lupinus albus HOM05D003636 ORTHO05D005160 3.7e-06 56.6 87 32.2
Medtr1g107575 Medicago truncatula HOM05D003636 ORTHO05D005160 3.7e-06 56.6 121 30.6
BcaB07g31117 Brassica carinata HOM05D003636 ORTHO05D005160 4.8e-06 56.2 87 29.9
C09p24190 Brassica napus HOM05D003636 ORTHO05D005160 4.8e-06 56.2 87 29.9
Zm00001eb056720 Zea mays HOM05D003636 ORTHO05D005160 4.8e-06 56.2 136 22.8
Lj2g0003499 Lotus japonicus HOM05D003636 ORTHO05D005160 8.2e-06 55.5 87 32.2
Lj5g0001808 Lotus japonicus HOM05D003636 ORTHO05D005160 8.2e-06 55.5 87 32.2
GSVIVG01018130001 Vitis vinifera HOM05D003636 ORTHO05D005160 8.2e-06 55.5 220 22.7


User provided reference genes

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