Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0008509g0010 Nicotiana tabacum HOM05D003967 ORTHO05D004531 1.4e-53 212.6 100 100.0
Nitab4.5_0000038g0070 Nicotiana tabacum HOM05D003967 ORTHO05D004531 5.4e-26 120.9 69 87.0
Nitab4.5_0002463g0050 Nicotiana tabacum HOM05D003967 ORTHO05D004531 6.9e-21 104.0 70 77.1
Nitab4.5_0004393g0050 Nicotiana tabacum HOM05D003967 ORTHO05D004531 7.6e-20 100.5 70 75.7
PGSC0003DMG400020113 Solanum tuberosum HOM05D003967 ORTHO05D004531 4.2e-18 94.7 62 77.4
CAN.G874.26 Capsicum annuum HOM05D003967 ORTHO05D004531 2.1e-17 92.4 62 75.8
Sopen06g034500 Solanum pennellii HOM05D003967 ORTHO05D004531 3.5e-17 91.7 62 75.8
Cc01_g16220 Coffea canephora HOM05D003967 ORTHO05D004531 6.0e-17 90.9 60 73.3
Solyc06g083110.2 Solanum lycopersicum HOM05D003967 ORTHO05D004531 6.0e-17 90.9 62 75.8
Oeu003635.1 Olea europaea HOM05D003967 ORTHO05D004531 3.3e-15 85.1 52 78.8
Oeu057847.1 Olea europaea HOM05D003967 ORTHO05D004531 5.6e-15 84.3 56 73.2
AUR62018499 Chenopodium quinoa HOM05D003967 ORTHO05D004531 1.6e-14 82.8 56 71.4
Potri.002G250200 Populus trichocarpa HOM05D003967 ORTHO05D004531 2.8e-14 82.0 61 65.6
AUR62020921 Chenopodium quinoa HOM05D003967 ORTHO05D004531 1.1e-13 80.1 56 69.6
Sabra02G0190500 Salix brachista HOM05D003967 ORTHO05D004531 1.1e-13 80.1 61 63.9
SalBow6G0539 Salvia bowleyana HOM05D003967 ORTHO05D004531 1.1e-13 80.1 68 61.8
TAR362G0123 Trochodendron aralioides HOM05D003967 ORTHO05D004531 1.1e-13 80.1 53 69.8
PSO832G2093 Papaver somniferum HOM05D003967 ORTHO05D004531 1.4e-13 79.7 56 66.1
MSTRG.17973 Avicennia marina HOM05D003967 ORTHO05D004531 2.4e-13 79.0 56 67.9
CDE05G3051 Ceratophyllum demersum HOM05D004870 ORTHO05D006061 3.1e-13 78.6 54 68.5
QL08p061776 Quercus lobata HOM05D003967 ORTHO05D004531 3.1e-13 78.6 52 73.1
Ah.13g077680 Amaranthus hybridus HOM05D003967 ORTHO05D004531 4.0e-13 78.2 49 77.6
CSS0024083 Camellia sinensis var. sinensis HOM05D003967 ORTHO05D004531 4.0e-13 78.2 56 67.9
CDE05G1038 Ceratophyllum demersum HOM05D003967 ORTHO05D004531 4.0e-13 78.2 56 66.1
MD09G1163500 Malus domestica HOM05D003967 ORTHO05D004531 4.0e-13 78.2 55 69.1
Nn5g27563 Nelumbo nucifera HOM05D003967 ORTHO05D004531 4.0e-13 78.2 54 68.5
TWI36G1715 Tripterygium wilfordii HOM05D003967 ORTHO05D004531 4.0e-13 78.2 53 67.9
GSVIVG01031640001 Vitis vinifera HOM05D003967 ORTHO05D004531 4.0e-13 78.2 56 67.9
Sc25g0005680 Simmondsia chinensis HOM05D003967 ORTHO05D004531 5.3e-13 77.8 56 67.9
Dinv13676 Davidia involucrata HOM05D003967 ORTHO05D004531 6.9e-13 77.4 56 66.1
FAN02G3806 Fragaria x ananassa HOM05D003967 ORTHO05D004531 6.9e-13 77.4 55 65.5
FAN05G3499 Fragaria x ananassa HOM05D003967 ORTHO05D004531 6.9e-13 77.4 55 65.5
FAN09G2378 Fragaria x ananassa HOM05D003967 ORTHO05D004531 6.9e-13 77.4 55 65.5
MD17G1164100 Malus domestica HOM05D003967 ORTHO05D004531 6.9e-13 77.4 55 69.1
TAR633G1936 Trochodendron aralioides HOM05D003967 ORTHO05D004531 6.9e-13 77.4 54 66.7
PSO824G0043 Papaver somniferum HOM05D003967 ORTHO05D004531 9.0e-13 77.0 56 64.3
CANSAT01G2467 Cannabis sativa HOM05D003967 ORTHO05D004531 1.2e-12 76.6 52 69.2
CiPaw.14G043300 Carya illinoinensis HOM05D003967 ORTHO05D004531 1.2e-12 76.6 56 66.1
Ciclev10016703m.g Citrus clementina HOM05D003967 ORTHO05D004531 1.2e-12 76.6 53 66.0
Migut.N00661 Erythranthe guttata HOM05D003967 ORTHO05D004531 1.2e-12 76.6 52 69.2
Hma1.2p1_0161F.1_g071320 Hydrangea macrophylla HOM05D003967 ORTHO05D004531 1.2e-12 76.6 53 67.9
Prupe.3G021000 Prunus persica HOM05D003967 ORTHO05D004531 1.2e-12 76.6 55 69.1
TAR365G1067 Trochodendron aralioides HOM05D003967 ORTHO05D004531 1.2e-12 76.6 56 64.3
VMungo0331G1295 Vigna mungo HOM05D003967 ORTHO05D004531 1.2e-12 76.6 70 55.7
Cpa.g.sc8.81 Carica papaya HOM05D003967 ORTHO05D004531 2.0e-12 75.9 56 64.3
CDE02G4486 Ceratophyllum demersum HOM05D003967 ORTHO05D004531 2.0e-12 75.9 56 62.5
A06p34930 Brassica napus HOM05D003967 ORTHO05D004531 2.6e-12 75.5 51 68.6
BraA06t26417Z Brassica rapa HOM05D003967 ORTHO05D004531 2.6e-12 75.5 51 68.6
RcHm_v2.0_Chr2g0149631 Rosa chinensis HOM05D003967 ORTHO05D004531 2.6e-12 75.5 53 67.9
Atru.chr4.1064 Acer truncatum HOM05D003967 ORTHO05D004531 3.4e-12 75.1 56 62.5
Cfa013303 Carpinus fangiana HOM05D003967 ORTHO05D004531 3.4e-12 75.1 47 76.6
CiPaw.13G054600 Carya illinoinensis HOM05D003967 ORTHO05D004531 3.4e-12 75.1 49 73.5
Haze_21784 Corylus avellana HOM05D003967 ORTHO05D004531 3.4e-12 75.1 47 76.6
PGR031G2843 Punica granatum HOM05D003967 ORTHO05D004531 3.4e-12 75.1 57 66.7
GSVIVG01037857001 Vitis vinifera HOM05D003967 ORTHO05D004531 3.4e-12 75.1 56 66.1
Atru.chr10.322 Acer truncatum HOM05D003967 ORTHO05D004531 4.5e-12 74.7 56 62.5
Atru.chr10.339 Acer truncatum HOM05D003967 ORTHO05D004531 4.5e-12 74.7 56 62.5
Aa31sc38G120 Aethionema arabicum HOM05D003967 ORTHO05D004531 4.5e-12 74.7 51 66.7
Gohir.A11G142100 Gossypium hirsutum HOM05D003967 ORTHO05D004531 5.8e-12 74.3 49 71.4
Gohir.D11G148400 Gossypium hirsutum HOM05D003967 ORTHO05D004531 5.8e-12 74.3 49 71.4
Gorai.007G159100 Gossypium raimondii HOM05D003967 ORTHO05D004531 5.8e-12 74.3 49 71.4
PSO675G2743 Papaver somniferum HOM05D003967 ORTHO05D004531 5.8e-12 74.3 56 62.5
Thecc.01G211900 Theobroma cacao HOM05D003967 ORTHO05D004531 5.8e-12 74.3 49 71.4
ATR0598G008 Amborella trichopoda HOM05D003967 ORTHO05D004531 7.6e-12 73.9 56 62.5
arahy.Tifrunner.gnm1.ann1.4AA542 Arachis hypogaea HOM05D003967 ORTHO05D004531 7.6e-12 73.9 49 69.4
arahy.Tifrunner.gnm1.ann1.52PG7K Arachis hypogaea HOM05D003967 ORTHO05D004531 7.6e-12 73.9 49 69.4
BcaB03g16171 Brassica carinata HOM05D003967 ORTHO05D004531 7.6e-12 73.9 48 70.8
Hma1.2p1_0161F.1_g071330 Hydrangea macrophylla HOM05D003967 ORTHO05D004531 7.6e-12 73.9 53 64.2
PSO541G0049 Papaver somniferum HOM05D003967 ORTHO05D004531 7.6e-12 73.9 56 62.5
Phvul.010G163400 Phaseolus vulgaris HOM05D003967 ORTHO05D004531 7.6e-12 73.9 57 61.4
THA.LOC104826649 Tarenaya hassleriana HOM05D003967 ORTHO05D004531 7.6e-12 73.9 49 71.4
MBI08_g10501_MAGBIO Magnolia biondii HOM05D003967 ORTHO05D004531 1.0e-11 73.6 49 69.4
Manes.13G053700 Manihot esculenta HOM05D003967 ORTHO05D004531 1.0e-11 73.6 53 62.3
arahy.Tifrunner.gnm1.ann1.NYJU0L Arachis hypogaea HOM05D003967 ORTHO05D004531 1.3e-11 73.2 49 71.4
FvH4_6g37080 Fragaria vesca HOM05D003967 ORTHO05D004531 1.3e-11 73.2 55 61.8
FAN14G1834 Fragaria x ananassa HOM05D003967 ORTHO05D004531 1.3e-11 73.2 55 61.8
Sp7g09800 Schrenkiella parvula HOM05D003967 ORTHO05D004531 1.3e-11 73.2 48 70.8
Sed0026883 Sechium edule HOM05D003967 ORTHO05D004531 1.3e-11 73.2 59 64.4
ClCG07G014610 Citrullus lanatus HOM05D003967 ORTHO05D004531 1.7e-11 72.8 50 70.0
Aqoxy3G01671 Aquilegia oxysepala HOM05D003967 ORTHO05D004531 2.9e-11 72.0 53 62.3
Lalb_Chr20g0112681 Lupinus albus HOM05D003967 ORTHO05D004531 2.9e-11 72.0 53 62.3
AL7G24650 Arabidopsis lyrata HOM05D003967 ORTHO05D004531 3.8e-11 71.6 51 64.7
THA.LOC104804641 Tarenaya hassleriana HOM05D003967 ORTHO05D004531 3.8e-11 71.6 49 67.3
BolC7t44889H Brassica oleracea HOM05D003967 ORTHO05D004531 4.9e-11 71.2 49 69.4
AT4G27990 Arabidopsis thaliana HOM05D003967 ORTHO05D004531 6.5e-11 70.9 49 67.3
BcaC05g28410 Brassica carinata HOM05D003967 ORTHO05D004531 6.5e-11 70.9 48 68.8
BcaC07g37415 Brassica carinata HOM05D003967 ORTHO05D004531 6.5e-11 70.9 48 66.7
BolC5t33217H Brassica oleracea HOM05D003967 ORTHO05D004531 6.5e-11 70.9 48 68.8
BolC8t47739H Brassica oleracea HOM05D003967 ORTHO05D004531 6.5e-11 70.9 48 66.7
BraA05t21825Z Brassica rapa HOM05D003967 ORTHO05D004531 6.5e-11 70.9 48 68.8
Carub.0007s1281 Capsella rubella HOM05D003967 ORTHO05D004531 6.5e-11 70.9 49 67.3
Ciclev10033520m.g Citrus clementina HOM05D003967 ORTHO05D004531 6.5e-11 70.9 53 62.3
Thhalv10021454m.g Eutrema salsugineum HOM05D003967 ORTHO05D004531 6.5e-11 70.9 60 58.3
Thhalv10026192m.g Eutrema salsugineum HOM05D003967 ORTHO05D004531 6.5e-11 70.9 48 66.7
CARHR078570 Cardamine hirsuta HOM05D003967 ORTHO05D004531 8.4e-11 70.5 54 61.1
Duzib211G0344 Durio zibethinus HOM05D003967 ORTHO05D004531 1.1e-10 70.1 47 68.1
Gohir.A07G090300 Gossypium hirsutum HOM05D003967 ORTHO05D004531 1.1e-10 70.1 49 67.3
Gohir.D07G095000 Gossypium hirsutum HOM05D003967 ORTHO05D004531 1.1e-10 70.1 49 67.3
Gorai.001G102300 Gossypium raimondii HOM05D003967 ORTHO05D004531 1.1e-10 70.1 49 67.3
AL3G18740 Arabidopsis lyrata HOM05D003967 ORTHO05D004531 1.4e-10 69.7 49 67.3
AT3G07430 Arabidopsis thaliana HOM05D003967 ORTHO05D004531 1.4e-10 69.7 49 67.3
Aa31LG5G18010 Aethionema arabicum HOM05D003967 ORTHO05D004531 2.5e-10 68.9 51 64.7
BcaNung01818 Brassica carinata HOM05D003967 ORTHO05D004531 2.5e-10 68.9 49 67.3
Duzib133G1035 Durio zibethinus HOM05D003967 ORTHO05D004531 3.2e-10 68.6 55 65.5
HanXRQChr17g0556271 Helianthus annuus HOM05D003967 ORTHO05D004531 4.2e-10 68.2 70 51.4
QL09p045921 Quercus lobata HOM05D003967 ORTHO05D004531 4.2e-10 68.2 45 73.3
QL09p045954 Quercus lobata HOM05D003967 ORTHO05D004531 4.2e-10 68.2 45 73.3
TWI18G0741 Tripterygium wilfordii HOM05D003967 ORTHO05D004531 4.2e-10 68.2 53 64.2
HPP92_019020 Vanilla planifolia HOM05D003967 ORTHO05D004531 4.2e-10 68.2 52 61.5
Sp3g06360 Schrenkiella parvula HOM05D003967 ORTHO05D004531 7.1e-10 67.4 60 55.0
unitig_0.g411 Utricularia gibba HOM05D003967 ORTHO05D004531 7.1e-10 67.4 56 62.5
Glyma.07G002700 Glycine max HOM05D003967 ORTHO05D004531 1.2e-09 66.6 53 64.2
Lj3g0022091 Lotus japonicus HOM05D003967 ORTHO05D004531 1.6e-09 66.2 53 60.4
BolC8t47525H Brassica oleracea HOM05D003967 ORTHO05D004531 2.1e-09 65.9 47 61.7
MELO3C022654.2 Cucumis melo HOM05D003967 ORTHO05D004531 3.5e-09 65.1 55 56.4
DCAR_003383 Daucus carota HOM05D003967 ORTHO05D004531 6.0e-09 64.3 61 55.7
Glyma.08G223900 Glycine max HOM05D003967 ORTHO05D004531 6.0e-09 64.3 53 62.3
Lj2P1118T62 Lonicera japonica HOM05D003967 ORTHO05D004531 6.0e-09 64.3 51 68.6
Migut.D00725 Erythranthe guttata HOM05D003967 ORTHO05D004531 7.9e-09 63.9 43 67.4
Carub.0003s0698 Capsella rubella HOM05D003967 ORTHO05D004531 2.3e-08 62.4 44 68.2
CsaV3_3G030630 Cucumis sativus L. HOM05D003967 ORTHO05D004531 5.1e-08 61.2 62 54.8
DCAR_022129 Daucus carota HOM05D003967 ORTHO05D004531 5.1e-08 61.2 61 52.5
Pp3c10_6170 Physcomitrium patens HOM05D003967 ORTHO05D004531 6.7e-08 60.8 52 55.8
TPR.G38809 Trifolium pratense HOM05D003967 ORTHO05D004531 8.7e-08 60.5 57 57.9
Pp3c14_5410 Physcomitrium patens HOM05D003967 ORTHO05D004531 1.1e-07 60.1 52 55.8
Sed0008239 Sechium edule HOM05D003967 ORTHO05D004531 1.1e-07 60.1 43 69.8
ECA233G3419 Erigeron canadensis HOM05D003967 ORTHO05D004531 1.5e-07 59.7 48 62.5
Medtr4g005520 Medicago truncatula HOM05D003967 ORTHO05D004531 1.9e-07 59.3 53 54.7
Hma1.2p1_0781F.1_g216900 Hydrangea macrophylla HOM05D003967 ORTHO05D004531 5.7e-07 57.8 61 50.8
Lsat_1_v5_gn_8_128201 Lactuca sativa HOM05D003967 ORTHO05D004531 5.7e-07 57.8 56 53.6
SHI10305 Sapria himalayana HOM05D003967 ORTHO05D004531 7.4e-07 57.4 58 44.8
Psat7g264400 Pisum sativum HOM05D003967 ORTHO05D004531 9.6e-07 57.0 54 57.4
Mapoly0008s0035 Marchantia polymorpha HOM05D003967 ORTHO05D004531 2.1e-06 55.8 44 59.1
Cc01_g16230 Coffea canephora HOM05D003967 ORTHO05D004531 4.8e-06 54.7 44 61.4
SGA_v2.0_scaffold8G04498 Striga asiatica HOM05D003967 ORTHO05D004531 4.8e-06 54.7 56 50.0


User provided reference genes

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