Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0008425g0010 Nicotiana tabacum HOM05D004545 ORTHO05D005420 3.4e-161 571.6 295 100.0
Solyc08g013990.3 Solanum lycopersicum HOM05D004545 ORTHO05D005420 4.7e-142 508.1 293 90.8
CAN.G466.2 Capsicum annuum HOM05D004545 ORTHO05D005420 8.0e-142 507.3 293 89.8
Nitab4.5_0005035g0030 Nicotiana tabacum HOM05D004545 ORTHO05D005420 1.1e-140 503.4 295 89.2
Nitab4.5_0000242g0090 Nicotiana tabacum HOM05D004545 ORTHO05D005420 1.3e-139 500.0 296 88.5
Peaxi162Scf00075g01538 Petunia axillaris HOM05D004545 ORTHO05D005420 3.1e-138 495.4 297 88.6
Hma1.2p1_0177F.1_g078020 Hydrangea macrophylla HOM05D004545 ORTHO05D005420 7.2e-127 457.6 299 79.3
Haze_12771 Corylus avellana HOM05D004545 ORTHO05D005420 6.1e-126 454.5 297 81.1
Duzib133G1216 Durio zibethinus HOM05D004545 ORTHO05D005420 1.0e-125 453.8 295 81.0
COL.COLO4_21869 Corchorus olitorius HOM05D004545 ORTHO05D005420 2.0e-124 449.5 297 80.8
QL08p030801 Quercus lobata HOM05D004545 ORTHO05D005420 2.0e-124 449.5 297 79.1
Peaxi162Scf00102g00840 Petunia axillaris HOM05D004545 ORTHO05D005420 2.6e-124 449.1 297 83.2
Thecc.01G181500 Theobroma cacao HOM05D004545 ORTHO05D005420 2.6e-124 449.1 297 80.5
Manes.13G066400 Manihot esculenta HOM05D004545 ORTHO05D005420 1.3e-123 446.8 297 79.5
Actinidia10802 Actinidia chinensis HOM05D004545 ORTHO05D005420 6.3e-123 444.5 293 81.6
CANSAT64G0134 Cannabis sativa HOM05D004545 ORTHO05D005420 8.3e-123 444.1 294 79.3
Dinv08724 Davidia involucrata HOM05D004545 ORTHO05D005420 9.1e-122 440.7 293 80.5
Manes.12G070000 Manihot esculenta HOM05D004545 ORTHO05D005420 1.2e-121 440.3 297 79.1
Prupe.3G211000 Prunus persica HOM05D004545 ORTHO05D005420 1.2e-121 440.3 291 79.0
TWI18G1088 Tripterygium wilfordii HOM05D004545 ORTHO05D005420 3.5e-121 438.7 296 79.1
vmacro12662 Vaccinium macrocarpon HOM05D004545 ORTHO05D005420 3.8e-120 435.3 297 80.5
CiPaw.03G155600 Carya illinoinensis HOM05D004545 ORTHO05D005420 8.6e-120 434.1 293 78.2
SGA_v2.0_scaffold106G30667 Striga asiatica HOM05D004545 ORTHO05D005420 8.6e-120 434.1 297 78.8
MD09G1113600 Malus domestica HOM05D004545 ORTHO05D005420 1.5e-119 433.3 292 75.7
MD17G1103700 Malus domestica HOM05D004545 ORTHO05D005420 1.9e-119 433.0 291 76.3
Atru.chr6.3251 Acer truncatum HOM05D004545 ORTHO05D005420 4.2e-119 431.8 298 77.2
Oeu008952.2 Olea europaea HOM05D004545 ORTHO05D005420 4.2e-119 431.8 296 77.4
MELO3C019739.2 Cucumis melo HOM05D004545 ORTHO05D005420 5.5e-119 431.4 297 77.8
CsaV3_6G015340 Cucumis sativus L. HOM05D004545 ORTHO05D005420 7.2e-119 431.0 297 77.4
Ciclev10016078m.g Citrus clementina HOM05D004545 ORTHO05D005420 1.2e-118 430.3 297 78.5
Gohir.D07G193600 Gossypium hirsutum HOM05D004545 ORTHO05D005420 2.1e-118 429.5 298 76.8
Gorai.001G216700 Gossypium raimondii HOM05D004545 ORTHO05D005420 2.8e-118 429.1 298 76.5
PGR142G4169 Punica granatum HOM05D004545 ORTHO05D005420 6.1e-118 427.9 298 76.8
Sabra02G0172100 Salix brachista HOM05D004545 ORTHO05D005420 8.0e-118 427.6 293 78.8
Gohir.A07G187100 Gossypium hirsutum HOM05D004545 ORTHO05D005420 1.8e-117 426.4 298 76.5
CiPaw.04G110900 Carya illinoinensis HOM05D004545 ORTHO05D005420 2.3e-117 426.0 297 76.4
Potri.002G225100 Populus trichocarpa HOM05D004545 ORTHO05D005420 5.2e-117 424.9 297 77.8
ClCG02G018050 Citrullus lanatus HOM05D004545 ORTHO05D005420 6.8e-117 424.5 307 74.6
Cpa.g.sc132.18 Carica papaya HOM05D004545 ORTHO05D005420 8.9e-117 424.1 297 76.8
Cc04_g08550 Coffea canephora HOM05D004545 ORTHO05D005420 8.9e-117 424.1 296 77.0
CSS0044911 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 1.5e-116 423.3 293 77.5
Sed0009821 Sechium edule HOM05D004545 ORTHO05D005420 2.6e-116 422.5 293 76.8
GSVIVG01030499001 Vitis vinifera HOM05D004545 ORTHO05D005420 2.6e-116 422.5 291 78.4
TWI36G1393 Tripterygium wilfordii HOM05D004545 ORTHO05D005420 3.4e-116 422.2 296 76.7
TAR626G1663 Trochodendron aralioides HOM05D004545 ORTHO05D005420 9.8e-116 420.6 298 74.5
Eucgr.K00758 Eucalyptus grandis HOM05D004545 ORTHO05D005420 2.2e-115 419.5 295 76.6
FvH4_6g42360 Fragaria vesca HOM05D004545 ORTHO05D005420 4.9e-115 418.3 291 75.9
FAN14G2961 Fragaria x ananassa HOM05D004545 ORTHO05D005420 4.9e-115 418.3 291 75.9
CSS0041882 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 8.3e-115 417.5 293 77.1
RcHm_v2.0_Chr2g0158271 Rosa chinensis HOM05D004545 ORTHO05D005420 1.1e-114 417.2 290 75.9
Migut.L01518 Erythranthe guttata HOM05D004545 ORTHO05D005420 1.4e-114 416.8 287 77.4
Potri.014G158000 Populus trichocarpa HOM05D004545 ORTHO05D005420 1.8e-114 416.4 297 76.8
FAN05G0363 Fragaria x ananassa HOM05D004545 ORTHO05D005420 7.0e-114 414.5 291 75.3
BcaC01g05879 Brassica carinata HOM05D004545 ORTHO05D005420 1.2e-113 413.7 294 75.9
A03p18410 Brassica napus HOM05D004545 ORTHO05D005420 2.0e-113 412.9 294 75.5
FAN02G2244 Fragaria x ananassa HOM05D004545 ORTHO05D005420 3.5e-113 412.1 305 73.4
Aa31LG5G4640 Aethionema arabicum HOM05D004545 ORTHO05D005420 4.5e-113 411.8 294 74.5
C03p21500 Brassica napus HOM05D004545 ORTHO05D005420 5.9e-113 411.4 294 75.5
Rhsim04G0050700 Rhododendron simsii HOM05D004545 ORTHO05D005420 5.9e-113 411.4 345 67.8
Hund12365 Selenicereus undatus HOM05D004545 ORTHO05D005420 1.3e-112 410.2 296 73.6
TAR624G0840 Trochodendron aralioides HOM05D004545 ORTHO05D005420 5.0e-112 408.3 300 74.0
Thhalv10016881m.g Eutrema salsugineum HOM05D004545 ORTHO05D005420 1.5e-111 406.8 299 73.6
Sed0012432 Sechium edule HOM05D004545 ORTHO05D005420 1.5e-111 406.8 278 78.8
Carub.0004s1443 Capsella rubella HOM05D004545 ORTHO05D005420 1.9e-111 406.4 294 74.8
Glyma.20G151100 Glycine max HOM05D004545 ORTHO05D005420 1.9e-111 406.4 267 79.0
EL10Ac7g17335 Beta vulgaris HOM05D004545 ORTHO05D005420 2.5e-111 406.0 290 73.1
Lsat_1_v5_gn_5_124360 Lactuca sativa HOM05D004545 ORTHO05D005420 2.5e-111 406.0 293 76.1
Ah.01g004130 Amaranthus hybridus HOM05D004545 ORTHO05D005420 3.3e-111 405.6 296 73.3
Sabra14G0120000 Salix brachista HOM05D004545 ORTHO05D005420 3.3e-111 405.6 296 73.6
PSO339G5690 Papaver somniferum HOM05D004545 ORTHO05D005420 1.2e-110 403.7 291 73.9
VMungo0720G1040 Vigna mungo HOM05D004545 ORTHO05D005420 2.1e-110 402.9 268 78.4
Phvul.007G062600 Phaseolus vulgaris HOM05D004545 ORTHO05D005420 4.7e-110 401.7 268 78.0
BraA03t11104Z Brassica rapa HOM05D004545 ORTHO05D005420 6.1e-110 401.4 313 70.9
Sc12g0002080 Simmondsia chinensis HOM05D004545 ORTHO05D005420 6.1e-110 401.4 294 74.1
ECA234G0510 Erigeron canadensis HOM05D004545 ORTHO05D005420 1.0e-109 400.6 287 76.0
Glyma.10G243100 Glycine max HOM05D004545 ORTHO05D005420 1.8e-109 399.8 267 78.3
Sp4g15340 Schrenkiella parvula HOM05D004545 ORTHO05D005420 2.3e-109 399.4 297 72.1
BcaC02g11365 Brassica carinata HOM05D004545 ORTHO05D005420 4.0e-109 398.7 291 74.9
AT2G32980 Arabidopsis thaliana HOM05D004545 ORTHO05D005420 6.8e-109 397.9 297 72.7
PSO384G3673 Papaver somniferum HOM05D004545 ORTHO05D005420 6.8e-109 397.9 291 72.2
BolC3t14537H Brassica oleracea HOM05D004545 ORTHO05D005420 8.9e-109 397.5 313 70.6
PSO384G1132 Papaver somniferum HOM05D004545 ORTHO05D005420 1.2e-108 397.1 291 72.2
PSO339G1796 Papaver somniferum HOM05D004545 ORTHO05D005420 2.6e-108 396.0 291 73.5
PSO384G1091 Papaver somniferum HOM05D004545 ORTHO05D005420 2.6e-108 396.0 291 72.2
CARHR126930 Cardamine hirsuta HOM05D004545 ORTHO05D005420 4.4e-108 395.2 295 72.2
AL120U10020 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 7.5e-108 394.4 296 74.0
C04p16530 Brassica napus HOM05D004545 ORTHO05D005420 1.3e-107 393.7 295 73.2
BraA05t20202Z Brassica rapa HOM05D004545 ORTHO05D005420 1.7e-107 393.3 290 74.1
unitig_0.g926 Utricularia gibba HOM05D004545 ORTHO05D005420 1.7e-107 393.3 297 71.0
THA.LOC104826135 Tarenaya hassleriana HOM05D004545 ORTHO05D005420 6.4e-107 391.3 269 77.3
HanXRQChr10g0306541 Helianthus annuus HOM05D004545 ORTHO05D005420 8.3e-107 391.0 287 73.5
HanXRQChr12g0373651 Helianthus annuus HOM05D004545 ORTHO05D005420 8.3e-107 391.0 287 73.9
Aqoxy2G01628 Aquilegia oxysepala HOM05D004545 ORTHO05D005420 3.2e-106 389.0 294 70.1
AUR62034461 Chenopodium quinoa HOM05D004545 ORTHO05D005420 9.2e-106 387.5 278 71.9
AUR62018128 Chenopodium quinoa HOM05D004545 ORTHO05D005420 1.6e-105 386.7 278 71.9
AL7G46590 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 2.7e-105 386.0 253 80.6
Lj1A780G55 Lonicera japonica HOM05D004545 ORTHO05D005420 2.3e-104 382.9 250 82.4
Aqoxy4G01985 Aquilegia oxysepala HOM05D004545 ORTHO05D005420 5.0e-104 381.7 293 68.6
BcaB02g10513 Brassica carinata HOM05D004545 ORTHO05D005420 8.6e-104 380.9 298 72.5
Migut.H01332 Erythranthe guttata HOM05D004545 ORTHO05D005420 1.1e-103 380.6 292 72.9
MBI15_g08964_MAGBIO Magnolia biondii HOM05D004545 ORTHO05D005420 4.3e-103 378.6 301 70.8
BcaB01g03956 Brassica carinata HOM05D004545 ORTHO05D005420 7.3e-103 377.9 268 76.5
A05p12640 Brassica napus HOM05D004545 ORTHO05D005420 4.7e-102 375.2 273 75.5
Lj5g0014275 Lotus japonicus HOM05D004545 ORTHO05D005420 2.2e-99 366.3 245 78.8
vmacro09357 Vaccinium macrocarpon HOM05D004545 ORTHO05D005420 3.7e-99 365.5 254 79.5
THA.LOC104816035 Tarenaya hassleriana HOM05D004545 ORTHO05D005420 1.9e-98 363.2 215 86.0
Ca_24113_v3 Cicer arietinum L. HOM05D004545 ORTHO05D005420 4.1e-98 362.1 247 78.9
arahy.Tifrunner.gnm1.ann1.71GTDD Arachis hypogaea HOM05D004545 ORTHO05D005420 7.0e-98 361.3 245 78.0
arahy.Tifrunner.gnm1.ann1.DQ148B Arachis hypogaea HOM05D004545 ORTHO05D005420 7.0e-98 361.3 249 77.1
arahy.Tifrunner.gnm1.ann1.N045ZR Arachis hypogaea HOM05D004545 ORTHO05D005420 1.6e-97 360.1 249 77.1
Medtr4g068700 Medicago truncatula HOM05D004545 ORTHO05D005420 7.8e-97 357.8 247 78.9
BolC4t23201H Brassica oleracea HOM05D004545 ORTHO05D005420 2.3e-96 356.3 312 65.7
DCAR_027885 Daucus carota HOM05D004545 ORTHO05D005420 5.6e-95 351.7 241 78.4
Psat7g206840 Pisum sativum HOM05D004545 ORTHO05D005420 8.1e-94 347.8 254 73.6
AL7G46610 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 8.9e-93 344.4 294 65.6
ATR0051G053 Amborella trichopoda HOM05D004545 ORTHO05D005420 8.3e-91 337.8 300 63.3
HPP92_013545 Vanilla planifolia HOM05D004545 ORTHO05D005420 2.3e-88 329.7 281 63.0
AL4G28510 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 8.6e-88 327.8 294 63.9
Os08g0204800 Oryza sativa ssp. japonica HOM05D004545 ORTHO05D005420 8.6e-88 327.8 279 65.9
Medtr1g102640 Medicago truncatula HOM05D004545 ORTHO05D005420 5.6e-87 325.1 224 78.6
Zm00001eb413680 Zea mays HOM05D004545 ORTHO05D005420 1.4e-85 320.5 274 67.2
DCAR_021142 Daucus carota HOM05D004545 ORTHO05D005420 9.9e-84 314.3 292 62.3
SGA_v2.0_scaffold51G18651 Striga asiatica HOM05D004545 ORTHO05D005420 3.9e-80 302.4 215 76.3
arahy.Tifrunner.gnm1.ann1.1MU1EY Arachis hypogaea HOM05D004545 ORTHO05D005420 5.1e-80 302.0 234 70.9
Psat6g203400 Pisum sativum HOM05D004545 ORTHO05D005420 1.5e-79 300.4 246 67.9
CSS0021334 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 3.3e-79 299.3 210 77.6
FAN09G3372 Fragaria x ananassa HOM05D004545 ORTHO05D005420 4.0e-77 292.4 179 83.2
Nn1g08031 Nelumbo nucifera HOM05D004545 ORTHO05D005420 1.5e-76 290.4 179 81.0
Lsat_1_v5_gn_9_105760 Lactuca sativa HOM05D004545 ORTHO05D005420 2.6e-76 289.7 258 63.6
Nitab4.5_0000185g0270 Nicotiana tabacum HOM05D004545 ORTHO05D005420 4.6e-73 278.9 206 74.3
SMO340G0284 Selaginella moellendorffii HOM05D004545 ORTHO05D005420 1.5e-71 273.9 311 50.5
Oeu040086.1 Olea europaea HOM05D004545 ORTHO05D005420 1.9e-71 273.5 252 61.5
ECA240G4712 Erigeron canadensis HOM05D003996 ORTHO05D004665 1.8e-69 266.9 220 64.5
Pp3c6_19990 Physcomitrium patens HOM05D004545 ORTHO05D005420 2.4e-69 266.5 310 49.4
HanXRQChr03g0076011 Helianthus annuus HOM05D004545 ORTHO05D005420 4.0e-69 265.8 272 59.2
Mapoly0045s0122 Marchantia polymorpha HOM05D004545 ORTHO05D005420 9.0e-69 264.6 278 55.0
AagrBONN_evm.TU.Sc2ySwM_228.751 Anthoceros agrestis HOM05D004545 ORTHO05D005420 6.4e-67 258.5 312 49.0
Sopen08g004850 Solanum pennellii HOM05D004545 ORTHO05D005420 6.4e-67 258.5 142 95.8
HPP92_013592 Vanilla planifolia HOM05D004545 ORTHO05D005420 5.4e-66 255.4 171 72.5
SEGI_00177 Sequoiadendron giganteum HOM05D004545 ORTHO05D005420 6.7e-64 248.4 179 65.9
CDE05G2122 Ceratophyllum demersum HOM05D004545 ORTHO05D005420 4.3e-63 245.7 233 57.1
Sopen08g004840 Solanum pennellii HOM05D004545 ORTHO05D005420 6.2e-62 241.9 144 85.4
Nn6g32193 Nelumbo nucifera HOM05D004545 ORTHO05D005420 1.7e-59 233.8 165 73.3
RcHm_v2.0_Chr1g0329411 Rosa chinensis HOM05D004545 ORTHO05D005420 8.2e-54 214.9 254 53.5
CBR_g58792 Chara braunii HOM05D004545 ORTHO05D005420 1.2e-49 201.1 261 44.1
RcHm_v2.0_Chr2g0158231 Rosa chinensis HOM05D004545 ORTHO05D005420 1.9e-47 193.7 172 64.5
Gohir.D10G162700 Gossypium hirsutum HOM05D004545 ORTHO05D005420 1.3e-43 181.0 158 64.6
Hund15353 Selenicereus undatus HOM05D004545 ORTHO05D005420 2.5e-42 176.8 118 78.8
Gohir.D10G109450 Gossypium hirsutum HOM05D004545 ORTHO05D005420 2.1e-33 147.1 112 70.5
Nn6g33383 Nelumbo nucifera HOM05D004545 ORTHO05D005420 3.1e-29 133.3 82 81.7
RcHm_v2.0_Chr2g0158241 Rosa chinensis HOM05D004545 ORTHO05D005420 5.5e-26 122.5 64 90.6
Gorai.011G120100 Gossypium raimondii HOM05D004545 ORTHO05D005420 3.6e-25 119.8 86 70.9
RcHm_v2.0_Chr1g0361251 Rosa chinensis HOM05D004545 ORTHO05D005420 4.7e-17 92.8 66 72.7
FAN09G2083 Fragaria x ananassa HOM05D004545 ORTHO05D005420 1.3e-14 84.7 90 54.4
HPP92_013591 Vanilla planifolia HOM05D004545 ORTHO05D005420 7.0e-13 79.0 111 48.6
RcHm_v2.0_Chr2g0158191 Rosa chinensis HOM05D004545 ORTHO05D005420 2.7e-12 77.0 89 51.7
Medtr2g005760 Medicago truncatula HOM05D004545 ORTHO05D005420 2.5e-10 70.5 55 70.9
Nn6g33384 Nelumbo nucifera HOM05D004545 ORTHO05D005420 4.7e-09 66.2 51 72.5


User provided reference genes

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