Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0008398g0020 Nicotiana tabacum HOM05D004072 ORTHO05D005933 0.0e+00 3274.2 1712 100.0
Nitab4.5_0001181g0040 Nicotiana tabacum HOM05D004072 ORTHO05D005933 0.0e+00 3103.2 1721 94.8
Sopen02g019350 Solanum pennellii HOM05D004072 ORTHO05D005933 0.0e+00 2904.4 1743 87.0
Solyc02g070260.4 Solanum lycopersicum HOM05D004072 ORTHO05D005933 0.0e+00 2875.5 1743 86.0
CAN.G660.42 Capsicum annuum HOM05D004072 ORTHO05D005933 0.0e+00 2838.9 1725 85.9
Peaxi162Scf00670g00114 Petunia axillaris HOM05D004072 ORTHO05D005933 0.0e+00 2533.8 1626 81.9
Dinv32181 Davidia involucrata HOM05D004072 ORTHO05D005933 0.0e+00 2437.9 1738 72.1
Cc09_g08230 Coffea canephora HOM05D004072 ORTHO05D005933 0.0e+00 2415.2 1746 71.6
SalBow8G4752 Salvia bowleyana HOM05D004072 ORTHO05D005933 0.0e+00 2383.2 1735 71.0
Actinidia07470 Actinidia chinensis HOM05D004072 ORTHO05D005933 0.0e+00 2375.9 1712 71.2
CSS0029738 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 0.0e+00 2372.8 1725 71.4
MSTRG.16285 Avicennia marina HOM05D004072 ORTHO05D005933 0.0e+00 2359.3 1737 70.2
GSVIVG01021613001 Vitis vinifera HOM05D004072 ORTHO05D005933 0.0e+00 2349.3 1722 70.2
Atru.chr10.895 Acer truncatum HOM05D004072 ORTHO05D005933 0.0e+00 2345.9 1726 69.9
RcHm_v2.0_Chr5g0015701 Rosa chinensis HOM05D004072 ORTHO05D005933 0.0e+00 2340.8 1722 70.4
TAR627G0650 Trochodendron aralioides HOM05D004072 ORTHO05D005933 0.0e+00 2319.3 1720 69.4
Nn3g20249 Nelumbo nucifera HOM05D004072 ORTHO05D005933 0.0e+00 2317.3 1714 69.8
Migut.M01885 Erythranthe guttata HOM05D004072 ORTHO05D005933 0.0e+00 2309.6 1739 69.9
Manes.06G055700 Manihot esculenta HOM05D004072 ORTHO05D005933 0.0e+00 2299.6 1719 69.0
SGA_v2.0_scaffold223G42858 Striga asiatica HOM05D004072 ORTHO05D005933 0.0e+00 2297.3 1780 68.7
Thecc.02G012200 Theobroma cacao HOM05D004072 ORTHO05D005933 0.0e+00 2286.9 1744 68.6
CiPaw.10G086200 Carya illinoinensis HOM05D004072 ORTHO05D005933 0.0e+00 2284.2 1727 68.5
MD10G1254200 Malus domestica HOM05D004072 ORTHO05D005933 0.0e+00 2283.8 1727 68.2
FvH4_3g09950 Fragaria vesca HOM05D004072 ORTHO05D005933 0.0e+00 2274.2 1730 68.0
CiPaw.09G116100 Carya illinoinensis HOM05D004072 ORTHO05D005933 0.0e+00 2271.1 1726 68.5
MD05G1274500 Malus domestica HOM05D004072 ORTHO05D005933 0.0e+00 2266.5 1743 67.3
FAN16G0609 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 2260.0 1730 67.6
Duzib132G0425 Durio zibethinus HOM05D004072 ORTHO05D005933 0.0e+00 2259.6 1740 67.2
TWI73G0101 Tripterygium wilfordii HOM05D004072 ORTHO05D005933 0.0e+00 2258.0 1728 67.5
Gohir.A01G139400 Gossypium hirsutum HOM05D004072 ORTHO05D005933 0.0e+00 2247.2 1742 67.7
FAN11G0415 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 2245.7 1730 67.4
PGR031G0553 Punica granatum HOM05D004072 ORTHO05D005933 0.0e+00 2237.6 1664 68.4
FAN25G0515 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 2237.2 1730 67.2
Manes.14G122228 Manihot esculenta HOM05D004072 ORTHO05D005933 0.0e+00 2230.7 1726 66.5
FAN21G2972 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 2226.4 1730 67.1
Gorai.002G162800 Gossypium raimondii HOM05D004072 ORTHO05D005933 0.0e+00 2216.4 1741 67.4
CANSAT35G1345 Cannabis sativa HOM05D004072 ORTHO05D005933 0.0e+00 2212.6 1766 65.1
Sabra16G0235400 Salix brachista HOM05D004072 ORTHO05D005933 0.0e+00 2212.2 1731 66.8
Potri.001G357700 Populus trichocarpa HOM05D004072 ORTHO05D005933 0.0e+00 2209.9 1713 66.8
Gohir.D01G131100 Gossypium hirsutum HOM05D004072 ORTHO05D005933 0.0e+00 2203.3 1741 67.4
PSO541G2055 Papaver somniferum HOM05D004072 ORTHO05D005933 0.0e+00 2194.5 1729 65.5
Aqoxy1G01646_Aqoxy1G01645 Aquilegia oxysepala HOM05D004072 ORTHO05D005933 0.0e+00 2188.3 1729 66.6
MELO3C007083.2 Cucumis melo HOM05D004072 ORTHO05D005933 0.0e+00 2185.2 1759 65.3
PSO675G3632 Papaver somniferum HOM05D004072 ORTHO05D005933 0.0e+00 2182.1 1729 65.0
Duzib052G1035 Durio zibethinus HOM05D004072 ORTHO05D005933 0.0e+00 2181.4 1671 67.2
CsaV3_6G052280 Cucumis sativus L. HOM05D004072 ORTHO05D005933 0.0e+00 2180.2 1750 65.2
Sed0022754 Sechium edule HOM05D004072 ORTHO05D005933 0.0e+00 2177.5 1747 64.7
Eucgr.E02482 Eucalyptus grandis HOM05D004072 ORTHO05D005933 0.0e+00 2165.6 1715 65.7
ECA236G2867 Erigeron canadensis HOM05D004072 ORTHO05D005933 0.0e+00 2162.1 1714 66.7
Lj6g0006190 Lotus japonicus HOM05D004072 ORTHO05D005933 0.0e+00 2149.4 1725 64.9
Lalb_Chr08g0233191 Lupinus albus HOM05D004072 ORTHO05D005933 0.0e+00 2142.9 1728 64.1
HanXRQChr04g0119071 Helianthus annuus HOM05D004072 ORTHO05D005933 0.0e+00 2142.5 1723 65.5
Ca_02513_v3 Cicer arietinum L. HOM05D004072 ORTHO05D005933 0.0e+00 2138.2 1723 64.9
Medtr2g048210 Medicago truncatula HOM05D004072 ORTHO05D005933 0.0e+00 2123.2 1714 64.9
Prupe.4G089200 Prunus persica HOM05D004072 ORTHO05D005933 0.0e+00 2122.4 1786 63.8
Phvul.009G217700 Phaseolus vulgaris HOM05D004072 ORTHO05D005933 0.0e+00 2116.3 1700 65.2
Lsat_1_v5_gn_7_29400 Lactuca sativa HOM05D004072 ORTHO05D005933 0.0e+00 2108.6 1706 64.1
Thhalv10016130m.g Eutrema salsugineum HOM05D004072 ORTHO05D005933 0.0e+00 2099.3 1691 64.7
AT2G34680 Arabidopsis thaliana HOM05D004072 ORTHO05D005933 0.0e+00 2097.8 1713 64.6
AL4G30670 Arabidopsis lyrata HOM05D004072 ORTHO05D005933 0.0e+00 2092.8 1709 64.0
THA.LOC104798608 Tarenaya hassleriana HOM05D004072 ORTHO05D005933 0.0e+00 2091.2 1707 63.4
Aa31LG10G6650 Aethionema arabicum HOM05D004072 ORTHO05D005933 0.0e+00 2089.7 1696 63.7
ATR0165G006 Amborella trichopoda HOM05D004072 ORTHO05D005933 0.0e+00 2080.8 1731 63.1
ClCG01G025080 Citrullus lanatus HOM05D004072 ORTHO05D005933 0.0e+00 2075.1 1893 59.9
A03p19230 Brassica napus HOM05D004072 ORTHO05D005933 0.0e+00 2072.0 1661 64.7
Sp4g16960 Schrenkiella parvula HOM05D004072 ORTHO05D005933 0.0e+00 2070.0 1714 63.4
arahy.Tifrunner.gnm1.ann1.39P5NE Arachis hypogaea HOM05D004072 ORTHO05D005933 0.0e+00 2068.9 1790 63.1
Carub.0004s1637 Capsella rubella HOM05D004072 ORTHO05D005933 0.0e+00 2067.0 1713 62.4
BraA03t11178Z Brassica rapa HOM05D004072 ORTHO05D005933 0.0e+00 2061.2 1670 64.3
vmacro03398 Vaccinium macrocarpon HOM05D004072 ORTHO05D005933 0.0e+00 2059.6 2142 55.1
Psat1g019120 Pisum sativum HOM05D004072 ORTHO05D005933 0.0e+00 2058.9 1414 71.6
AUR62038603 Chenopodium quinoa HOM05D004072 ORTHO05D005933 0.0e+00 2051.2 1709 63.5
C03p22430 Brassica napus HOM05D004072 ORTHO05D005933 0.0e+00 2050.4 1663 64.1
Ah.14g086190 Amaranthus hybridus HOM05D004072 ORTHO05D005933 0.0e+00 2044.6 1683 63.7
BolC3t14626H Brassica oleracea HOM05D004072 ORTHO05D005933 0.0e+00 2037.3 1661 63.9
Sc24g0001460 Simmondsia chinensis HOM05D004072 ORTHO05D005933 0.0e+00 2030.4 1691 63.8
QL05p053312 Quercus lobata HOM05D004072 ORTHO05D005933 0.0e+00 2022.3 1764 61.5
EL10Ac8g19581 Beta vulgaris HOM05D004072 ORTHO05D005933 0.0e+00 2011.5 1755 61.8
arahy.Tifrunner.gnm1.ann1.WCP5HM Arachis hypogaea HOM05D004072 ORTHO05D005933 0.0e+00 2009.6 1698 62.0
AUR62042015 Chenopodium quinoa HOM05D004072 ORTHO05D005933 0.0e+00 1993.8 1690 62.6
Oeu040089.1 Olea europaea HOM05D004072 ORTHO05D005933 0.0e+00 1985.7 1805 61.2
Hund21569 Selenicereus undatus HOM05D004072 ORTHO05D005933 0.0e+00 1944.1 1681 62.1
DCAR_003864 Daucus carota HOM05D004072 ORTHO05D005933 0.0e+00 1919.1 1706 61.2
CARHR128800 Cardamine hirsuta HOM05D004072 ORTHO05D005933 0.0e+00 1914.4 1739 57.2
VMungo1309G2749 Vigna mungo HOM05D004072 ORTHO05D005933 0.0e+00 1910.6 1296 70.2
Glyma.09G084300 Glycine max HOM05D004072 ORTHO05D005933 0.0e+00 1898.6 1292 70.3
SEGI_16447 Sequoiadendron giganteum HOM05D004072 ORTHO05D005933 0.0e+00 1879.4 1760 57.1
BcaC01g05784 Brassica carinata HOM05D004072 ORTHO05D005933 0.0e+00 1830.5 1433 65.1
Zm00001eb299970 Zea mays HOM05D004072 ORTHO05D005933 0.0e+00 1829.3 1707 57.5
Ciclev10014084m.g Citrus clementina HOM05D004072 ORTHO05D005933 0.0e+00 1816.6 1157 74.5
COL.COLO4_17682 Corchorus olitorius HOM05D004072 ORTHO05D005933 0.0e+00 1810.4 1740 55.6
Rhsim13G0119900 Rhododendron simsii HOM05D004072 ORTHO05D005933 0.0e+00 1726.8 1468 63.1
Pp3c17_7410 Physcomitrium patens HOM05D004072 ORTHO05D005933 0.0e+00 1663.7 1761 52.2
SMO271G0077 Selaginella moellendorffii HOM05D004072 ORTHO05D005933 0.0e+00 1655.6 1694 51.5
Pp3c14_11530 Physcomitrium patens HOM05D004072 ORTHO05D005933 0.0e+00 1648.3 1764 51.5
SMO308G0046 Selaginella moellendorffii HOM05D004072 ORTHO05D005933 0.0e+00 1644.8 1691 52.7
Mapoly0023s0068 Marchantia polymorpha HOM05D004072 ORTHO05D005933 0.0e+00 1597.4 1625 52.4
Haze_05771 Corylus avellana HOM05D004072 ORTHO05D005933 0.0e+00 1570.1 1731 54.0
Glyma.15G192700 Glycine max HOM05D004072 ORTHO05D005933 0.0e+00 1544.6 1045 71.5
Lj1C1164T5 Lonicera japonica HOM05D004072 ORTHO05D005933 0.0e+00 1479.2 936 75.5
HPP92_001000 Vanilla planifolia HOM05D004072 ORTHO05D005933 0.0e+00 1440.2 1084 63.0
Potri.011G090200 Populus trichocarpa HOM05D004072 ORTHO05D005933 0.0e+00 1389.0 1139 65.4
HPP92_000967 Vanilla planifolia HOM05D004072 ORTHO05D005933 0.0e+00 1335.9 1391 53.8
TPR.G28615 Trifolium pratense HOM05D004072 ORTHO05D005933 0.0e+00 1307.4 1126 64.5
THA.LOC104813323 Tarenaya hassleriana HOM05D004072 ORTHO05D005933 0.0e+00 1262.3 1174 59.4
CAN.G660.43 Capsicum annuum HOM05D004072 ORTHO05D005933 0.0e+00 1179.1 1594 47.7
TAR626G0585 Trochodendron aralioides HOM05D004072 ORTHO05D005933 0.0e+00 1118.6 948 66.6
TAR626G0996 Trochodendron aralioides HOM05D004072 ORTHO05D005933 3.7e-308 1062.4 910 59.7
EL10Ac9g22637 Beta vulgaris HOM05D004072 ORTHO05D005933 2.7e-282 976.5 732 64.6
Hma1.2p1_1600F.1_g293150 Hydrangea macrophylla HOM05D004072 ORTHO05D005933 2.9e-268 929.9 616 72.9
CDE02G3068 Ceratophyllum demersum HOM05D004072 ORTHO05D005933 1.1e-240 838.2 681 59.3
CDE02G4494 Ceratophyllum demersum HOM05D004072 ORTHO05D005933 1.1e-238 831.6 802 59.0
TPR.G28617 Trifolium pratense HOM05D004072 ORTHO05D005933 2.0e-237 827.4 601 66.7
Potri.011G090150 Populus trichocarpa HOM05D004072 ORTHO05D005933 5.0e-228 796.2 552 70.5
CBR_g51063 Chara braunii HOM05D004072 ORTHO05D005933 2.8e-207 727.2 848 43.6
Cpa.g.sc17.88 Carica papaya HOM05D004072 ORTHO05D005933 5.6e-163 580.1 429 66.0
RcHm_v2.0_Chr1g0313161 Rosa chinensis HOM05D004072 ORTHO05D005933 2.7e-149 534.6 328 78.4
Os07g0148800 Oryza sativa ssp. japonica HOM05D004072 ORTHO05D005933 3.9e-148 530.8 376 69.1
Glyma.15G192800 Glycine max HOM05D004072 ORTHO05D005933 4.3e-139 500.7 586 56.1
Lj1A1163T36 Lonicera japonica HOM05D004072 ORTHO05D005933 1.3e-138 499.2 640 53.6
Medtr8g464200 Medicago truncatula HOM05D004072 ORTHO05D005933 7.6e-128 463.4 860 35.2
Rhsim07G0133800 Rhododendron simsii HOM05D004072 ORTHO05D005933 1.7e-127 462.2 694 40.5
Cpa.g.sc17.85 Carica papaya HOM05D004072 ORTHO05D005933 1.2e-104 386.3 241 75.9
HPP92_000970 Vanilla planifolia HOM05D004072 ORTHO05D005933 7.2e-102 377.1 550 50.0
Cpa.g.sc17.87 Carica papaya HOM05D004072 ORTHO05D005933 2.7e-101 375.2 247 69.6
RcHm_v2.0_Chr5g0015771 Rosa chinensis HOM05D004072 ORTHO05D005933 1.4e-100 372.9 335 60.0
CSS0006934 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 8.8e-100 370.2 215 77.7
CBR_g58028 Chara braunii HOM05D004072 ORTHO05D005933 3.7e-98 364.8 428 43.5
CSS0027246 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 1.2e-80 306.6 190 79.5
CSS0044654 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 3.7e-74 285.0 177 69.5
Glyma.09G084500 Glycine max HOM05D004072 ORTHO05D005933 8.3e-66 257.3 384 48.4
Lj1A1163T37 Lonicera japonica HOM05D004072 ORTHO05D019491 2.8e-61 242.3 153 73.2
PGSC0003DMG400021174 Solanum tuberosum HOM05D004072 ORTHO05D005933 2.5e-54 219.2 115 96.5
Ca_19908_v3 Cicer arietinum L. HOM05D004072 ORTHO05D005933 1.1e-49 203.8 175 56.0
QL05p053334 Quercus lobata HOM05D004072 ORTHO05D005933 2.0e-43 183.0 99 89.9
CBR_g34929 Chara braunii HOM05D004072 ORTHO05D005933 1.7e-42 179.9 195 44.1
Cpa.g.sc17.83 Carica papaya HOM05D004072 ORTHO05D005933 1.6e-40 173.3 132 60.6
VMungo1309G0832 Vigna mungo HOM05D004072 ORTHO05D005933 5.6e-38 164.9 454 36.6
Lsat_1_v5_gn_1_88400 Lactuca sativa HOM05D004072 ORTHO05D005933 2.2e-34 152.9 130 51.5
Atru.chr2.7 Acer truncatum HOM05D004072 ORTHO05D005933 1.2e-32 147.1 205 44.4
CBR_g34931 Chara braunii HOM05D000019 ORTHO05D001702 3.5e-32 145.6 123 56.1
MELO3C003358.2 Cucumis melo HOM05D004072 ORTHO05D005933 9.9e-27 127.5 161 44.7
Cc09_g08270 Coffea canephora HOM05D004072 ORTHO05D005933 8.4e-26 124.4 73 82.2
Atru.chr10.903 Acer truncatum HOM05D004072 ORTHO05D021063 1.9e-25 123.2 219 46.6
Hma1.2p1_1600F.1_g293130 Hydrangea macrophylla HOM05D004072 ORTHO05D005933 2.4e-25 122.9 63 95.2
Actinidia04621 Actinidia chinensis HOM05D004072 ORTHO05D005933 4.6e-24 118.6 106 56.6
Cpa.g.sc17.84 Carica papaya HOM05D004072 ORTHO05D019491 1.3e-23 117.1 83 67.5
Medtr3g010273 Medicago truncatula HOM05D004072 ORTHO05D005933 6.7e-23 114.8 93 64.5
CSS0009414 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 2.5e-22 112.8 59 86.4
CSS0023750 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D021063 3.3e-22 112.5 285 40.0
HanXRQChr09g0247891 Helianthus annuus HOM05D004072 ORTHO05D005933 1.6e-21 110.2 78 64.1
CAN.G23816.1 Capsicum annuum HOM05D004072 ORTHO05D038051 2.1e-21 109.8 84 64.3
Cc09_g08260 Coffea canephora HOM05D004072 ORTHO05D005933 2.8e-21 109.4 75 76.0
RcHm_v2.0_Chr1g0313151 Rosa chinensis HOM05D004072 ORTHO05D005933 1.9e-17 96.7 57 80.7
vmacro01040 Vaccinium macrocarpon HOM05D000902 ORTHO05D000832 3.2e-17 95.9 206 32.5
SalBow5G3729 Salvia bowleyana HOM05D004072 ORTHO05D007163 1.6e-16 93.6 98 45.9
Actinidia36004 Actinidia chinensis HOM05D004072 ORTHO05D038051 2.3e-15 89.7 58 69.0
PGSC0003DMG400002279 Solanum tuberosum HOM05D004072 ORTHO05D005933 1.9e-14 86.7 50 92.0
Nn1g03421 Nelumbo nucifera HOM05D004072 ORTHO05D019491 5.7e-14 85.1 51 72.5
PGSC0003DMG400006210 Solanum tuberosum HOM05D007022 ORTHO05D008868 1.3e-13 84.0 52 84.6
Duzib248G0219 Durio zibethinus HOM05D004072 ORTHO05D019491 2.8e-13 82.8 94 48.9
Cpa.g.sc17.80 Carica papaya HOM05D004072 ORTHO05D021063 8.2e-13 81.3 301 33.9
SalBow5G4417 Salvia bowleyana HOM05D004072 ORTHO05D007163 1.9e-09 70.1 95 40.0
Lsat_1_v5_gn_6_30620 Lactuca sativa HOM05D000062 ORTHO05D013119 2.5e-09 69.7 156 32.7
Duzib248G0875 Durio zibethinus HOM05D000121 ORTHO05D000102 4.2e-09 68.9 51 66.7
Lsat_1_v5_gn_7_25100 Lactuca sativa HOM05D003161 ORTHO05D005173 4.2e-09 68.9 68 50.0
CARHR128810 Cardamine hirsuta HOM05D004072 ORTHO05D019491 3.6e-08 65.9 43 60.5
Lsat_1_v5_gn_6_117121 Lactuca sativa HOM05D004072 ORTHO05D001686 3.6e-08 65.9 61 54.1
Lsat_1_v5_gn_5_73260 Lactuca sativa HOM05D000371 ORTHO05D006177 6.1e-08 65.1 42 64.3
Lsat_1_v5_gn_9_121081 Lactuca sativa HOM05D004072 ORTHO05D001686 6.1e-08 65.1 51 62.7
Lsat_1_v5_gn_7_40200 Lactuca sativa HOM05D000062 ORTHO05D013119 5.1e-07 62.0 153 32.7
CSS0034048 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D021063 1.5e-06 60.5 286 32.2
Actinidia04622 Actinidia chinensis HOM05D004072 ORTHO05D019491 4.3e-06 58.9 44 61.4
Rhsim12G0022600 Rhododendron simsii HOM05D004072 ORTHO05D005933 5.7e-06 58.5 49 65.3


User provided reference genes

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