Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0008385g0020 Nicotiana tabacum HOM05D005432 ORTHO05D004599 5.2e-194 681.0 381 100.0
Nitab4.5_0000680g0130 Nicotiana tabacum HOM05D005432 ORTHO05D004599 5.1e-141 505.0 403 76.4
Nitab4.5_0008385g0010 Nicotiana tabacum HOM05D005432 ORTHO05D004599 5.2e-77 292.4 191 85.3
Peaxi162Scf00500g00034 Petunia axillaris HOM05D005432 ORTHO05D004599 1.5e-68 264.2 208 73.6
Solyc09g008760.1 Solanum lycopersicum HOM05D005432 ORTHO05D004599 7.3e-63 245.4 218 65.1
PGSC0003DMG400002732 Solanum tuberosum HOM05D005432 ORTHO05D004599 8.0e-62 241.9 204 67.6
Nitab4.5_0000680g0150 Nicotiana tabacum HOM05D005432 ORTHO05D004599 2.4e-58 230.3 174 80.5
PGSC0003DMG400012977 Solanum tuberosum HOM05D005432 ORTHO05D004599 1.0e-56 224.9 204 64.2
Solyc09g008750.1 Solanum lycopersicum HOM05D005432 ORTHO05D004599 1.1e-53 214.9 214 61.7
PGSC0003DMG400012978 Solanum tuberosum HOM05D005432 ORTHO05D004599 1.2e-52 211.5 181 71.3
Solyc09g008740.1 Solanum lycopersicum HOM05D005432 ORTHO05D004599 7.1e-50 202.2 181 66.9
Sopen09g003530 Solanum pennellii HOM05D005432 ORTHO05D004599 9.2e-50 201.8 185 65.4
CAN.G1830.1 Capsicum annuum HOM05D005432 ORTHO05D004599 1.0e-48 198.4 166 69.3
CAN.G1830.2 Capsicum annuum HOM05D005432 ORTHO05D004599 1.3e-48 198.0 268 48.9
Sopen09g003550 Solanum pennellii HOM05D005432 ORTHO05D004599 6.6e-48 195.7 190 63.2
CAN.G1830.3 Capsicum annuum HOM05D005432 ORTHO05D004599 1.3e-43 181.4 196 57.7
Sopen09g003540 Solanum pennellii HOM05D005432 ORTHO05D004599 6.0e-41 172.6 178 62.4
CAN.G775.5 Capsicum annuum HOM05D005432 ORTHO05D004599 1.1e-29 135.2 169 51.5
PGSC0003DMG400003320 Solanum tuberosum HOM05D005432 ORTHO05D004599 2.6e-28 130.6 202 46.0
Sopen02g014700 Solanum pennellii HOM05D005432 ORTHO05D004599 5.8e-28 129.4 229 42.8
Peaxi162Scf00449g00414 Petunia axillaris HOM05D005432 ORTHO05D004599 1.7e-27 127.9 168 50.0
Solyc02g064570.2 Solanum lycopersicum HOM05D005432 ORTHO05D004599 7.1e-26 122.5 194 45.9
TAR381G0486 Trochodendron aralioides HOM05D005432 ORTHO05D004599 1.4e-21 108.2 188 39.9
DCAR_010807 Daucus carota HOM05D005432 ORTHO05D004599 9.0e-21 105.5 184 40.8
SalBow5G2133 Salvia bowleyana HOM05D005432 ORTHO05D004599 1.7e-19 101.3 218 36.2
Cc07_g07280 Coffea canephora HOM05D005432 ORTHO05D004599 2.9e-19 100.5 225 37.8
TAR625G0570 Trochodendron aralioides HOM05D005432 ORTHO05D004599 8.4e-19 99.0 187 40.6
Sabra14G0006100 Salix brachista HOM05D005432 ORTHO05D004599 1.4e-18 98.2 190 40.5
ECA232G3846 Erigeron canadensis HOM05D005432 ORTHO05D004599 1.9e-18 97.8 222 36.5
Oeu011980.1 Olea europaea HOM05D005432 ORTHO05D004599 3.2e-18 97.1 197 39.1
Gohir.A12G078000 Gossypium hirsutum HOM05D005432 ORTHO05D004599 1.2e-17 95.1 200 34.0
Lsat_1_v5_gn_4_160141 Lactuca sativa HOM05D005432 ORTHO05D004599 2.7e-17 94.0 201 37.8
Potri.007G006200 Populus trichocarpa HOM05D005432 ORTHO05D004599 6.0e-17 92.8 207 39.1
TAR628G1364 Trochodendron aralioides HOM05D005432 ORTHO05D004599 1.0e-16 92.0 187 38.0
Gohir.D12G076200 Gossypium hirsutum HOM05D005432 ORTHO05D004599 1.3e-16 91.7 176 36.9
Gorai.008G084600 Gossypium raimondii HOM05D005432 ORTHO05D004599 1.3e-16 91.7 179 36.3
Gohir.A11G213000 Gossypium hirsutum HOM05D005432 ORTHO05D004599 2.3e-16 90.9 175 35.4
Gohir.D11G210200 Gossypium hirsutum HOM05D005432 ORTHO05D004599 2.3e-16 90.9 177 36.2
Gorai.007G225500 Gossypium raimondii HOM05D005432 ORTHO05D004599 3.9e-16 90.1 175 35.4
Migut.L00424 Erythranthe guttata HOM05D005432 ORTHO05D004599 1.5e-15 88.2 225 33.8
Thecc.01G075000 Theobroma cacao HOM05D005432 ORTHO05D004599 1.9e-15 87.8 133 42.9
MD02G1188600 Malus domestica HOM05D005432 ORTHO05D004599 3.3e-15 87.0 148 37.8
Potri.014G006400 Populus trichocarpa HOM05D005432 ORTHO05D004599 3.3e-15 87.0 131 42.7
ECA232G0649 Erigeron canadensis HOM05D005432 ORTHO05D004599 4.3e-15 86.7 195 37.9
Oeu021446.1 Olea europaea HOM05D005432 ORTHO05D004599 4.3e-15 86.7 195 38.5
Dinv23035 Davidia involucrata HOM05D005432 ORTHO05D004599 9.6e-15 85.5 184 39.7
SGA_v2.0_scaffold15G07481 Striga asiatica HOM05D005432 ORTHO05D004599 9.6e-15 85.5 190 35.3
Ciclev10026545m.g Citrus clementina HOM05D005432 ORTHO05D004599 2.1e-14 84.3 108 43.5
FAN23G2070 Fragaria x ananassa HOM05D005432 ORTHO05D004599 2.1e-14 84.3 109 40.4
FvH4_1g18020 Fragaria vesca HOM05D005432 ORTHO05D004599 2.8e-14 84.0 109 39.4
FAN19G1119 Fragaria x ananassa HOM05D005432 ORTHO05D004599 2.8e-14 84.0 109 39.4
Duzib147G0737 Durio zibethinus HOM05D005432 ORTHO05D004599 4.8e-14 83.2 178 36.0
Duzib187G0823 Durio zibethinus HOM05D005432 ORTHO05D004599 4.8e-14 83.2 133 43.6
Sabra07G0004500 Salix brachista HOM05D005432 ORTHO05D004599 6.2e-14 82.8 136 40.4
QL06p039087 Quercus lobata HOM05D005432 ORTHO05D004599 1.4e-13 81.6 124 41.9
Migut.L00423 Erythranthe guttata HOM05D005432 ORTHO05D004599 3.1e-13 80.5 181 36.5
FAN26G1008 Fragaria x ananassa HOM05D005432 ORTHO05D004599 4.1e-13 80.1 115 40.9
Actinidia11967 Actinidia chinensis HOM05D005432 ORTHO05D004599 6.9e-13 79.3 95 49.5
FAN28G2020 Fragaria x ananassa HOM05D005432 ORTHO05D004599 6.9e-13 79.3 109 38.5
Lsat_1_v5_gn_4_160361 Lactuca sativa HOM05D005432 ORTHO05D004599 6.9e-13 79.3 101 47.5
Rhsim10G0095100 Rhododendron simsii HOM05D005432 ORTHO05D004599 9.0e-13 79.0 94 48.9
Nitab4.5_0016059g0010 Nicotiana tabacum HOM05D005432 ORTHO05D004599 1.2e-12 78.6 154 42.2
RcHm_v2.0_Chr2g0108511 Rosa chinensis HOM05D005432 ORTHO05D004599 1.2e-12 78.6 109 37.6
Lsat_1_v5_gn_4_160241 Lactuca sativa HOM05D005432 ORTHO05D004599 1.5e-12 78.2 207 32.4
Manes.13G109800 Manihot esculenta HOM05D005432 ORTHO05D004599 2.6e-12 77.4 210 33.3
ECA232G3481 Erigeron canadensis HOM05D005432 ORTHO05D004599 5.8e-12 76.3 188 36.2
TWI77G0559 Tripterygium wilfordii HOM05D005432 ORTHO05D004599 7.6e-12 75.9 92 44.6
TAR376G0425 Trochodendron aralioides HOM05D005432 ORTHO05D004599 1.3e-11 75.1 189 37.0
Migut.H00333 Erythranthe guttata HOM05D005432 ORTHO05D004599 1.7e-11 74.7 174 35.1
Duzib264G0647 Durio zibethinus HOM05D005432 ORTHO05D004599 2.9e-11 73.9 132 39.4
Rhsim10G0095000 Rhododendron simsii HOM05D005432 ORTHO05D004599 3.8e-11 73.6 165 37.0
COL.COLO4_11602 Corchorus olitorius HOM05D005432 ORTHO05D004599 1.1e-10 72.0 88 43.2
Atru.chr3.1044 Acer truncatum HOM05D005432 ORTHO05D004599 2.5e-10 70.9 133 37.6
Ca_22097_v3 Cicer arietinum L. HOM05D005432 ORTHO05D004599 2.5e-10 70.9 81 46.9
Prupe.6G218300 Prunus persica HOM05D005432 ORTHO05D004599 2.5e-10 70.9 124 37.1
VMungo0251G2573 Vigna mungo HOM05D005432 ORTHO05D004599 2.5e-10 70.9 83 50.6
CANSAT01G2351 Cannabis sativa HOM05D005432 ORTHO05D004599 4.2e-10 70.1 153 33.3
Nitab4.5_0000036g0120 Nicotiana tabacum HOM05D005432 ORTHO05D004599 1.2e-09 68.6 164 36.6
Haze_15264 Corylus avellana HOM05D005432 ORTHO05D004599 2.7e-09 67.4 81 51.9
Glyma.05G107500 Glycine max HOM05D005432 ORTHO05D004599 2.7e-09 67.4 94 44.7
Hma1.2p1_0424F.1_g150570 Hydrangea macrophylla HOM05D005432 ORTHO05D004599 3.5e-09 67.0 126 41.3
ClCG01G017720 Citrullus lanatus HOM05D005432 ORTHO05D004599 4.6e-09 66.6 95 40.0
Lj4g0003965 Lotus japonicus HOM05D005432 ORTHO05D004599 4.6e-09 66.6 85 47.1
Phvul.003G233700 Phaseolus vulgaris HOM05D005432 ORTHO05D004599 4.6e-09 66.6 82 48.8
MD02G1188700 Malus domestica HOM05D005432 ORTHO05D004599 6.1e-09 66.2 206 32.0
TWI74G0597 Tripterygium wilfordii HOM05D005432 ORTHO05D004599 7.9e-09 65.9 120 36.7
Prupe.6G218200 Prunus persica HOM05D005432 ORTHO05D004599 1.0e-08 65.5 60 51.7
CiPaw.01G002700 Carya illinoinensis HOM05D005432 ORTHO05D004599 1.3e-08 65.1 194 28.9
Eucgr.H02318 Eucalyptus grandis HOM05D005432 ORTHO05D004599 1.3e-08 65.1 53 56.6
Eucgr.H02317 Eucalyptus grandis HOM05D005432 ORTHO05D004599 1.8e-08 64.7 174 32.2
Medtr4g097280 Medicago truncatula HOM05D005432 ORTHO05D004599 2.3e-08 64.3 86 47.7
Manes.12G116300 Manihot esculenta HOM05D005432 ORTHO05D004599 3.0e-08 63.9 123 39.8
Medtr4g097350 Medicago truncatula HOM05D005432 ORTHO05D004599 3.0e-08 63.9 93 46.2
MELO3C007650.2 Cucumis melo HOM05D005432 ORTHO05D004599 3.9e-08 63.5 91 39.6
Gohir.A11G048800 Gossypium hirsutum HOM05D005432 ORTHO05D004599 3.9e-08 63.5 89 43.8
Gohir.D11G052400 Gossypium hirsutum HOM05D005432 ORTHO05D004599 3.9e-08 63.5 89 43.8
Gorai.007G056800 Gossypium raimondii HOM05D005432 ORTHO05D004599 3.9e-08 63.5 89 43.8
Medtr4g097360 Medicago truncatula HOM05D005432 ORTHO05D004599 3.9e-08 63.5 88 45.5
BraA08t34242Z Brassica rapa HOM05D009364 ORTHO05D004599 1.1e-07 62.0 53 54.7
Lsat_1_v5_gn_4_160281 Lactuca sativa HOM05D005432 ORTHO05D004599 1.1e-07 62.0 129 39.5
Psat4g081760 Pisum sativum HOM05D005432 ORTHO05D004599 1.1e-07 62.0 87 48.3
A03p65490 Brassica napus HOM05D009364 ORTHO05D004599 1.5e-07 61.6 52 55.8
BraA03t15601Z Brassica rapa HOM05D009364 ORTHO05D004599 1.5e-07 61.6 52 55.8
A08p22730 Brassica napus HOM05D009364 ORTHO05D004599 1.9e-07 61.2 53 54.7
Rhsim08G0092400 Rhododendron simsii HOM05D005432 ORTHO05D004599 1.9e-07 61.2 166 33.1
A09p57200 Brassica napus HOM05D009364 ORTHO05D004599 2.5e-07 60.8 58 50.0
BraA09t41113Z Brassica rapa HOM05D009364 ORTHO05D004599 2.5e-07 60.8 58 50.0
BcaC07g41018 Brassica carinata HOM05D009364 ORTHO05D004599 3.3e-07 60.5 56 51.8
AL4G12470 Arabidopsis lyrata HOM05D009364 ORTHO05D004599 4.3e-07 60.1 55 56.4
BcaNung02084 Brassica carinata HOM05D009364 ORTHO05D004599 4.3e-07 60.1 68 47.1
PGR102G0812 Punica granatum HOM05D005432 ORTHO05D004599 4.3e-07 60.1 144 38.9
BcaB03g12334 Brassica carinata HOM05D009364 ORTHO05D004599 5.7e-07 59.7 84 39.3
TPR.G24244 Trifolium pratense HOM05D005432 ORTHO05D004599 5.7e-07 59.7 87 47.1
VMungo1215G3148 Vigna mungo HOM05D005432 ORTHO05D004599 5.7e-07 59.7 56 48.2
CsaV3_6G044250 Cucumis sativus L. HOM05D005432 ORTHO05D004599 7.4e-07 59.3 82 40.2
Phvul.002G009700 Phaseolus vulgaris HOM05D005432 ORTHO05D004599 7.4e-07 59.3 56 48.2
AT2G22880 Arabidopsis thaliana HOM05D009364 ORTHO05D004599 9.7e-07 58.9 60 53.3
Carub.0004s0201 Capsella rubella HOM05D009364 ORTHO05D004599 9.7e-07 58.9 58 50.0
Carub.0007s0254 Capsella rubella HOM05D009364 ORTHO05D004599 9.7e-07 58.9 75 42.7
TPR.G24237 Trifolium pratense HOM05D005432 ORTHO05D004599 9.7e-07 58.9 179 31.8
Sp4g01930 Schrenkiella parvula HOM05D009364 ORTHO05D004599 1.6e-06 58.2 55 50.9
BcaC06g33374 Brassica carinata HOM05D009364 ORTHO05D004599 2.2e-06 57.8 52 53.8
C03p79220 Brassica napus HOM05D009364 ORTHO05D004599 2.2e-06 57.8 83 42.2
C07p62590 Brassica napus HOM05D009364 ORTHO05D004599 2.2e-06 57.8 52 53.8
BolC7t46674H Brassica oleracea HOM05D009364 ORTHO05D004599 2.2e-06 57.8 52 53.8
BcaC01g00392 Brassica carinata HOM05D009364 ORTHO05D004599 2.8e-06 57.4 85 44.7
BolC3t20164H Brassica oleracea HOM05D009364 ORTHO05D004599 2.8e-06 57.4 85 44.7
CARHR114200 Cardamine hirsuta HOM05D009364 ORTHO05D004599 2.8e-06 57.4 54 50.0
Hma1.2p1_1085F.1_g255410 Hydrangea macrophylla HOM05D005432 ORTHO05D004599 2.8e-06 57.4 59 57.6
Glyma.01G195300 Glycine max HOM05D005432 ORTHO05D004599 3.7e-06 57.0 57 45.6
C08p40200 Brassica napus HOM05D009364 ORTHO05D004599 4.8e-06 56.6 135 30.4
BolC8t51591H Brassica oleracea HOM05D009364 ORTHO05D004599 4.8e-06 56.6 135 30.4
Nn6g34511 Nelumbo nucifera HOM05D005432 ORTHO05D004599 4.8e-06 56.6 125 35.2
Sed0012898 Sechium edule HOM05D005432 ORTHO05D004599 4.8e-06 56.6 128 32.0
TPR.G24220 Trifolium pratense HOM05D005432 ORTHO05D004599 4.8e-06 56.6 93 43.0
AL7G12970 Arabidopsis lyrata HOM05D009364 ORTHO05D004599 6.3e-06 56.2 80 41.2
CARHR246100 Cardamine hirsuta HOM05D009364 ORTHO05D004599 6.3e-06 56.2 71 40.8
arahy.Tifrunner.gnm1.ann1.6CR1D2 Arachis hypogaea HOM05D005432 ORTHO05D004599 8.2e-06 55.8 66 43.9
CiPaw.02G001400 Carya illinoinensis HOM05D005432 ORTHO05D004599 8.2e-06 55.8 166 32.5
ClCG02G012170 Citrullus lanatus HOM05D005432 ORTHO05D004599 8.2e-06 55.8 39 59.0
CsaV3_2G016320 Cucumis sativus L. HOM05D005432 ORTHO05D004599 8.2e-06 55.8 44 52.3
THA.LOC104804211 Tarenaya hassleriana HOM05D009364 ORTHO05D004599 8.2e-06 55.8 66 50.0


User provided reference genes

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