Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0008379g0010 Nicotiana tabacum HOM05D000002 ORTHO05D000001 1.2e-109 399.8 196 100.0
Sopen12g006730 Solanum pennellii HOM05D000002 ORTHO05D000001 2.8e-18 96.3 189 36.5
Sopen11g003490 Solanum pennellii HOM05D000002 ORTHO05D000001 6.3e-18 95.1 149 38.3
Atru.chr6.1164 Acer truncatum HOM05D000002 ORTHO05D000001 1.1e-17 94.4 184 38.0
CAN.G145.8 Capsicum annuum HOM05D000002 ORTHO05D000001 5.0e-15 85.5 131 39.7
CAN.G162.80 Capsicum annuum HOM05D000011 ORTHO05D000018 1.9e-14 83.6 90 45.6
Hma1.2p1_0763F.1_g214730 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 1.9e-14 83.6 123 35.8
TAR301G0003 Trochodendron aralioides HOM05D000002 ORTHO05D000001 4.2e-14 82.4 146 35.6
Psat3g114760 Pisum sativum HOM05D000002 ORTHO05D000001 4.6e-13 79.0 116 37.1
Ah.11g039570 Amaranthus hybridus HOM05D000002 ORTHO05D000001 1.0e-12 77.8 152 32.9
C08p15500 Brassica napus HOM05D000002 ORTHO05D000075 1.0e-12 77.8 124 35.5
Psat0s3331g0080 Pisum sativum HOM05D000002 ORTHO05D000001 2.3e-12 76.6 86 44.2
Sopen05g011750 Solanum pennellii HOM05D000002 ORTHO05D000001 3.9e-12 75.9 132 35.6
MD00G1084700 Malus domestica HOM05D000002 ORTHO05D000001 6.7e-12 75.1 169 32.0
TPR.G18516 Trifolium pratense HOM05D000002 ORTHO05D000001 6.7e-12 75.1 100 38.0
TAR099G0005 Trochodendron aralioides HOM05D000002 ORTHO05D000001 8.8e-12 74.7 145 35.2
Sopen01g012220 Solanum pennellii HOM05D000002 ORTHO05D000001 1.1e-11 74.3 131 35.9
Atru.chr2.2580 Acer truncatum HOM05D000002 ORTHO05D000001 1.5e-11 73.9 165 31.5
Hma1.2p1_0672F.1_g201120 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 2.0e-11 73.6 66 48.5
MD12G1052500 Malus domestica HOM05D000002 ORTHO05D000001 2.5e-11 73.2 115 33.0
Sabra01G0117000 Salix brachista HOM05D000002 ORTHO05D000001 3.3e-11 72.8 93 39.8
Rhsim05G0182900 Rhododendron simsii HOM05D000002 ORTHO05D000001 5.7e-11 72.0 95 37.9
MD14G1189500 Malus domestica HOM05D000002 ORTHO05D000001 7.4e-11 71.6 144 31.9
Sopen06g032620 Solanum pennellii HOM05D000537 ORTHO05D000415 9.7e-11 71.2 114 36.0
Psat0s4034g0120 Pisum sativum HOM05D000002 ORTHO05D022441 1.7e-10 70.5 88 39.8
Nn8g39601 Nelumbo nucifera HOM05D000002 ORTHO05D000001 2.8e-10 69.7 119 32.8
Psat0s238g0040 Pisum sativum HOM05D018073 ORTHO05D029097 3.7e-10 69.3 130 30.0
Sopen06g032630 Solanum pennellii HOM05D000002 ORTHO05D000001 3.7e-10 69.3 176 30.1
Psat2g113400 Pisum sativum HOM05D000002 ORTHO05D022441 4.8e-10 68.9 107 40.2
TPR.G3498 Trifolium pratense HOM05D000002 ORTHO05D000001 4.8e-10 68.9 88 40.9
Hma1.2p1_2159F.1_g315520 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 6.3e-10 68.6 104 31.7
Potri.003G014176 Populus trichocarpa HOM05D000002 ORTHO05D010776 6.3e-10 68.6 160 31.2
THA.LOC104806172 Tarenaya hassleriana HOM05D000002 ORTHO05D000001 6.3e-10 68.6 127 33.1
ECA234G0762 Erigeron canadensis HOM05D000002 ORTHO05D000001 8.2e-10 68.2 95 35.8
MD07G1259300 Malus domestica HOM05D000002 ORTHO05D000157 8.2e-10 68.2 84 39.3
Rhsim09G0019300 Rhododendron simsii HOM05D000002 ORTHO05D000001 1.1e-09 67.8 90 36.7
TPR.G8161 Trifolium pratense HOM05D000002 ORTHO05D000001 1.1e-09 67.8 101 39.6
CAN.G439.15 Capsicum annuum HOM05D000002 ORTHO05D000001 1.4e-09 67.4 107 37.4
Sopen01g025080 Solanum pennellii HOM05D000002 ORTHO05D000001 1.4e-09 67.4 161 29.8
Sopen02g037750 Solanum pennellii HOM05D000002 ORTHO05D000001 1.4e-09 67.4 161 29.8
Sopen07g006410 Solanum pennellii HOM05D000002 ORTHO05D000001 1.4e-09 67.4 161 29.8
Sopen07g029680 Solanum pennellii HOM05D000002 ORTHO05D000001 1.4e-09 67.4 161 29.8
Sopen07g031580 Solanum pennellii HOM05D000002 ORTHO05D000001 1.4e-09 67.4 161 29.8
Sopen08g004430 Solanum pennellii HOM05D000002 ORTHO05D000001 1.4e-09 67.4 161 29.8
Sopen10g024730 Solanum pennellii HOM05D000002 ORTHO05D000001 1.4e-09 67.4 161 29.8
Sopen12g022570 Solanum pennellii HOM05D000002 ORTHO05D000001 1.4e-09 67.4 161 29.8
THA.LOC104807900 Tarenaya hassleriana HOM05D000002 ORTHO05D000001 1.4e-09 67.4 126 30.2
Cc06_g20010 Coffea canephora HOM05D000002 ORTHO05D000001 1.8e-09 67.0 105 36.2
Sopen04g009110 Solanum pennellii HOM05D000002 ORTHO05D000001 1.8e-09 67.0 131 32.8
Hma1.2p1_2372F.1_g320810 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 3.1e-09 66.2 104 30.8
Hma1.2p1_2923F.1_g330370 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 3.1e-09 66.2 104 30.8
Hma1.2p1_3198F.1_g333876 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 3.1e-09 66.2 104 30.8
MD09G1100700 Malus domestica HOM05D000002 ORTHO05D000001 4.1e-09 65.9 120 29.2
MD11G1146000 Malus domestica HOM05D000002 ORTHO05D000001 4.1e-09 65.9 135 31.1
CSS0039053 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 5.3e-09 65.5 109 33.9
Hma1.2p1_0706F.1_g207010 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 5.3e-09 65.5 66 43.9
Nn1g00402 Nelumbo nucifera HOM05D000002 ORTHO05D000001 5.3e-09 65.5 66 43.9
CSS0042232 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 6.9e-09 65.1 109 33.9
CAN.G449.68 Capsicum annuum HOM05D000002 ORTHO05D000001 6.9e-09 65.1 52 51.9
Nn2g11548 Nelumbo nucifera HOM05D000002 ORTHO05D000001 6.9e-09 65.1 66 42.4
Rhsim02G0160900 Rhododendron simsii HOM05D000002 ORTHO05D000001 6.9e-09 65.1 77 41.6
Psat3g090640 Pisum sativum HOM05D000002 ORTHO05D000001 1.2e-08 64.3 99 35.4
Hma1.2p1_0577F.1_g182200 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 1.5e-08 63.9 139 32.4
Rhsim10G0160500 Rhododendron simsii HOM05D000002 ORTHO05D000001 1.5e-08 63.9 91 39.6
Sp4g06215 Schrenkiella parvula HOM05D000002 ORTHO05D000001 1.5e-08 63.9 149 32.2
Oeu024986.1 Olea europaea HOM05D000002 ORTHO05D000001 2.0e-08 63.5 130 31.5
SHI29541 Sapria himalayana HOM05D035704 ORTHO05D000001 2.0e-08 63.5 68 38.2
Sopen11g010030 Solanum pennellii HOM05D000002 ORTHO05D000001 2.0e-08 63.5 115 31.3
Potri.005G161366 Populus trichocarpa HOM05D000002 ORTHO05D010776 2.6e-08 63.2 168 29.2
TPR.G27549 Trifolium pratense HOM05D000002 ORTHO05D000001 2.6e-08 63.2 48 50.0
Hma1.2p1_0939F.1_g239370 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 3.4e-08 62.8 136 32.4
Hma1.2p1_1987F.1_g310120 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 3.4e-08 62.8 156 26.9
Rhsim04G0108900 Rhododendron simsii HOM05D000002 ORTHO05D000001 3.4e-08 62.8 145 29.7
Sabra06G0056900 Salix brachista HOM05D000002 ORTHO05D000001 3.4e-08 62.8 182 27.5
Atru.chr11.277 Acer truncatum HOM05D000002 ORTHO05D000001 4.5e-08 62.4 155 31.6
CSS0041353 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 4.5e-08 62.4 153 27.5
CiPaw.01G057300 Carya illinoinensis HOM05D000002 ORTHO05D000001 5.9e-08 62.0 95 37.9
ECA232G3484 Erigeron canadensis HOM05D000002 ORTHO05D000001 5.9e-08 62.0 124 33.9
MD17G1109500 Malus domestica HOM05D000002 ORTHO05D000001 5.9e-08 62.0 77 33.8
MD17G1115400 Malus domestica HOM05D000002 ORTHO05D000001 5.9e-08 62.0 164 29.9
Psat2g152960 Pisum sativum HOM05D000002 ORTHO05D000001 5.9e-08 62.0 134 35.1
PGR031G2637 Punica granatum HOM05D027407 ORTHO05D000001 5.9e-08 62.0 91 31.9
Solyc05g015654.1 Solanum lycopersicum HOM05D000002 ORTHO05D000001 5.9e-08 62.0 161 26.7
GSVIVG01036343001 Vitis vinifera HOM05D000067 ORTHO05D000097 5.9e-08 62.0 168 28.6
Hma1.2p1_0000F.1_g000910 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 7.7e-08 61.6 139 34.5
Hma1.2p1_0565F.1_g179600 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 7.7e-08 61.6 144 30.6
Hma1.2p1_0602F.1_g187610 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 7.7e-08 61.6 147 31.3
THA.LOC104801935 Tarenaya hassleriana HOM05D000002 ORTHO05D000001 7.7e-08 61.6 147 29.9
Aa31LG1G6100 Aethionema arabicum HOM05D000002 ORTHO05D000001 1.0e-07 61.2 188 27.1
Potri.004G125150 Populus trichocarpa HOM05D000002 ORTHO05D000001 1.0e-07 61.2 145 31.0
Hma1.2p1_0200F.1_g086090 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 1.3e-07 60.8 87 35.6
Hma1.2p1_1093F.1_g256070 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 1.3e-07 60.8 171 30.4
THA.LOC104817067 Tarenaya hassleriana HOM05D000002 ORTHO05D000001 1.3e-07 60.8 101 31.7
ClCG05G012250 Citrullus lanatus HOM05D000002 ORTHO05D000001 1.7e-07 60.5 104 34.6
MD04G1231400 Malus domestica HOM05D000002 ORTHO05D000001 1.7e-07 60.5 63 44.4
MD09G1214100 Malus domestica HOM05D000002 ORTHO05D000001 1.7e-07 60.5 139 28.1
MD14G1225200 Malus domestica HOM05D000002 ORTHO05D000001 1.7e-07 60.5 117 32.5
Potri.010G000301 Populus trichocarpa HOM05D000002 ORTHO05D010776 1.7e-07 60.5 155 29.0
THA.LOC109115967 Tarenaya hassleriana HOM05D000002 ORTHO05D000001 1.7e-07 60.5 102 31.4
TPR.G429 Trifolium pratense HOM05D000002 ORTHO05D000001 1.7e-07 60.5 128 27.3
arahy.Tifrunner.gnm1.ann1.L2V2PJ Arachis hypogaea HOM05D000002 ORTHO05D000001 2.2e-07 60.1 143 27.3
CSS0008547 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.9e-07 59.7 110 28.2
CSS0025864 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.9e-07 59.7 182 30.2
CSS0025925 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.9e-07 59.7 110 28.2
CSS0045539 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.9e-07 59.7 103 33.0
PSO135G0350 Papaver somniferum HOM05D000002 ORTHO05D000001 2.9e-07 59.7 100 32.0
PSO302G0248 Papaver somniferum HOM05D005221 ORTHO05D006355 2.9e-07 59.7 111 30.6
Sopen01g012540 Solanum pennellii HOM05D000002 ORTHO05D000001 2.9e-07 59.7 94 34.0
Sopen01g033880 Solanum pennellii HOM05D000002 ORTHO05D000001 2.9e-07 59.7 94 34.0
Sopen02g026060 Solanum pennellii HOM05D000002 ORTHO05D000001 2.9e-07 59.7 94 34.0
Sopen03g027510 Solanum pennellii HOM05D000002 ORTHO05D000001 2.9e-07 59.7 94 34.0
Sopen04g023510 Solanum pennellii HOM05D000002 ORTHO05D000001 2.9e-07 59.7 94 34.0
Sopen07g021230 Solanum pennellii HOM05D000002 ORTHO05D000001 2.9e-07 59.7 94 34.0
Sopen08g003220 Solanum pennellii HOM05D000002 ORTHO05D000001 2.9e-07 59.7 94 34.0
Sopen09g009630 Solanum pennellii HOM05D000002 ORTHO05D000001 2.9e-07 59.7 94 34.0
Sopen09g024650 Solanum pennellii HOM05D000047 ORTHO05D000589 2.9e-07 59.7 112 32.1
TPR.G17816 Trifolium pratense HOM05D000002 ORTHO05D000001 2.9e-07 59.7 59 42.4
TAR218G0003 Trochodendron aralioides HOM05D000002 ORTHO05D000001 2.9e-07 59.7 132 29.5
VMungo0251G0530 Vigna mungo HOM05D000002 ORTHO05D037837 2.9e-07 59.7 98 31.6
CSS0017698 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.8e-07 59.3 119 27.7
CSS0041837 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.8e-07 59.3 119 27.7
HanXRQChr09g0254161 Helianthus annuus HOM05D000002 ORTHO05D000001 3.8e-07 59.3 139 30.9
Hma1.2p1_0020F.1_g014040 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 3.8e-07 59.3 94 28.7
Hma1.2p1_1151F.1_g261930 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 3.8e-07 59.3 91 29.7
TPR.G24932 Trifolium pratense HOM05D000002 ORTHO05D000001 3.8e-07 59.3 97 29.9
TAR175G0002 Trochodendron aralioides HOM05D000002 ORTHO05D000001 3.8e-07 59.3 179 28.5
CAN.G2055.2 Capsicum annuum HOM05D011121 ORTHO05D018873 5.0e-07 58.9 102 32.4
Hma1.2p1_1397F.1_g280780 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 5.0e-07 58.9 112 29.5
Sopen03g022200 Solanum pennellii HOM05D000002 ORTHO05D000001 5.0e-07 58.9 88 33.0
Sopen05g011710 Solanum pennellii HOM05D000002 ORTHO05D000001 5.0e-07 58.9 88 33.0
Sopen10g032310 Solanum pennellii HOM05D000002 ORTHO05D000001 5.0e-07 58.9 88 33.0
CAN.G1741.2 Capsicum annuum HOM05D000002 ORTHO05D000001 6.5e-07 58.5 63 39.7
ECA233G4547 Erigeron canadensis HOM05D000002 ORTHO05D000001 6.5e-07 58.5 105 33.3
PSO566G0172 Papaver somniferum HOM05D000002 ORTHO05D000001 6.5e-07 58.5 52 51.9
PGR107G0005 Punica granatum HOM05D000002 ORTHO05D000001 6.5e-07 58.5 103 34.0
Sopen02g011420 Solanum pennellii HOM05D000002 ORTHO05D000001 6.5e-07 58.5 88 34.1
CSS0034935 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 8.5e-07 58.2 137 30.7
Hma1.2p1_1940F.1_g308370 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 8.5e-07 58.2 108 36.1
Rhsim05G0026100 Rhododendron simsii HOM05D000002 ORTHO05D000001 8.5e-07 58.2 156 30.8
THA.LOC104807052 Tarenaya hassleriana HOM05D000002 ORTHO05D000001 8.5e-07 58.2 155 33.5
THA.LOC109116241 Tarenaya hassleriana HOM05D000002 ORTHO05D000001 8.5e-07 58.2 155 33.5
CSS0011046 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.1e-06 57.8 188 26.6
MD13G1099200 Malus domestica HOM05D000002 ORTHO05D000001 1.1e-06 57.8 131 28.2
Oeu057465.1 Olea europaea HOM05D000002 ORTHO05D000001 1.1e-06 57.8 186 30.1
SHI38827 Sapria himalayana HOM05D000002 ORTHO05D004433 1.1e-06 57.8 140 28.6
Sopen01g047020 Solanum pennellii HOM05D000002 ORTHO05D000001 1.1e-06 57.8 117 31.6
TAR084G0004 Trochodendron aralioides HOM05D001435 ORTHO05D001304 1.1e-06 57.8 186 30.1
CAN.G624.9 Capsicum annuum HOM05D011121 ORTHO05D018873 1.4e-06 57.4 91 35.2
CiPaw.01G048700 Carya illinoinensis HOM05D000002 ORTHO05D000001 1.4e-06 57.4 147 29.3
THA.LOC104815030 Tarenaya hassleriana HOM05D000002 ORTHO05D000001 1.4e-06 57.4 44 50.0
CSS0034832 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.9e-06 57.0 125 28.0
ECA248G2841 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.9e-06 57.0 115 33.0
Manes.13G013492 Manihot esculenta HOM05D000002 ORTHO05D000001 1.9e-06 57.0 153 32.0
Rhsim02G0101600 Rhododendron simsii HOM05D000002 ORTHO05D000001 1.9e-06 57.0 141 27.7
Rhsim05G0062600 Rhododendron simsii HOM05D000002 ORTHO05D000001 1.9e-06 57.0 189 27.0
Sed0012881 Sechium edule HOM05D015857 ORTHO05D017858 1.9e-06 57.0 67 38.8
Sopen12g009430 Solanum pennellii HOM05D008648 ORTHO05D000001 1.9e-06 57.0 65 41.5
TPR.G5721 Trifolium pratense HOM05D000002 ORTHO05D000001 1.9e-06 57.0 152 29.6
arahy.Tifrunner.gnm1.ann1.KPGU9X Arachis hypogaea HOM05D000002 ORTHO05D000001 2.5e-06 56.6 93 32.3
Sabra15G0028100 Salix brachista HOM05D000002 ORTHO05D000001 2.5e-06 56.6 96 30.2
TPR.G27008 Trifolium pratense HOM05D000002 ORTHO05D000001 2.5e-06 56.6 119 29.4
CSS0047136 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.2e-06 56.2 136 27.9
CAN.G467.2 Capsicum annuum HOM05D000002 ORTHO05D000001 3.2e-06 56.2 92 31.5
SEGI_26654 Sequoiadendron giganteum HOM05D000002 ORTHO05D000001 3.2e-06 56.2 112 27.7
Sopen09g024970 Solanum pennellii HOM05D000002 ORTHO05D000001 3.2e-06 56.2 171 25.1
SGA_v2.0_scaffold2G01302 Striga asiatica HOM05D000033 ORTHO05D001614 3.2e-06 56.2 138 31.9
MD13G1050200 Malus domestica HOM05D000002 ORTHO05D000001 4.2e-06 55.8 136 33.8
Sopen06g015780 Solanum pennellii HOM05D000002 ORTHO05D000001 4.2e-06 55.8 107 30.8
TPR.G17518 Trifolium pratense HOM05D000002 ORTHO05D000001 4.2e-06 55.8 163 25.2
Aa31LG3G5060 Aethionema arabicum HOM05D000002 ORTHO05D000001 5.5e-06 55.5 183 29.0
Os02g0671800 Oryza sativa ssp. japonica HOM05D000002 ORTHO05D000001 5.5e-06 55.5 88 33.0
SHI27796 Sapria himalayana HOM05D000002 ORTHO05D000001 7.2e-06 55.1 135 28.1
Sp1g37055 Schrenkiella parvula HOM05D000002 ORTHO05D000001 7.2e-06 55.1 104 28.8
Sopen01g008940 Solanum pennellii HOM05D000002 ORTHO05D000001 7.2e-06 55.1 141 34.0
Sopen04g023780 Solanum pennellii HOM05D000002 ORTHO05D000001 7.2e-06 55.1 86 36.0
Sopen10g024410 Solanum pennellii HOM05D000002 ORTHO05D000001 7.2e-06 55.1 88 31.8
Sopen12g018740 Solanum pennellii HOM05D000002 ORTHO05D000001 7.2e-06 55.1 87 32.2
CAN.G128.92 Capsicum annuum HOM05D000002 ORTHO05D000001 9.4e-06 54.7 63 38.1
ECA232G4656 Erigeron canadensis HOM05D000002 ORTHO05D000001 9.4e-06 54.7 70 38.6
Hma1.2p1_0505F.1_g168260 Hydrangea macrophylla HOM05D035704 ORTHO05D000001 9.4e-06 54.7 116 30.2
SHI16256 Sapria himalayana HOM05D000002 ORTHO05D004433 9.4e-06 54.7 135 27.4
TWI77G0605 Tripterygium wilfordii HOM05D000002 ORTHO05D000001 9.4e-06 54.7 45 44.4
TAR180G0005 Trochodendron aralioides HOM05D000002 ORTHO05D000001 9.4e-06 54.7 44 47.7


User provided reference genes

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