Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0008364g0030 Nicotiana tabacum HOM05D005520 ORTHO05D006633 1.5e-115 419.5 201 100.0
Nitab4.5_0000158g0130 Nicotiana tabacum HOM05D005520 ORTHO05D006633 5.0e-95 351.3 189 91.0
Solyc11g071960.2 Solanum lycopersicum HOM05D005520 ORTHO05D006633 5.0e-79 298.1 203 73.9
CAN.G689.10 Capsicum annuum HOM05D005520 ORTHO05D006633 8.0e-77 290.8 205 71.2
Sopen11g029630 Solanum pennellii HOM05D005520 ORTHO05D006633 8.0e-77 290.8 203 72.4
Peaxi162Scf00429g00622 Petunia axillaris HOM05D005520 ORTHO05D006633 2.7e-72 275.8 198 72.2
THA.LOC104825832 Tarenaya hassleriana HOM05D005520 ORTHO05D006633 4.4e-67 258.5 195 65.1
PGSC0003DMG400002983 Solanum tuberosum HOM05D005520 ORTHO05D006633 3.7e-66 255.4 136 85.3
Sc18g0003610 Simmondsia chinensis HOM05D005520 ORTHO05D006633 1.4e-65 253.4 198 64.6
RcHm_v2.0_Chr6g0253041 Rosa chinensis HOM05D005520 ORTHO05D006633 2.4e-65 252.7 202 63.4
Eucgr.G01264 Eucalyptus grandis HOM05D005520 ORTHO05D006633 3.1e-65 252.3 200 63.5
MD05G1097000 Malus domestica HOM05D005520 ORTHO05D006633 9.1e-65 250.8 199 63.8
Dinv42222 Davidia involucrata HOM05D005520 ORTHO05D006633 1.2e-64 250.4 195 64.1
Prupe.8G141400 Prunus persica HOM05D005520 ORTHO05D006633 2.7e-64 249.2 196 64.3
CiPaw.06G167100 Carya illinoinensis HOM05D005520 ORTHO05D006633 4.5e-64 248.4 197 64.5
Dinv15795 Davidia involucrata HOM05D005520 ORTHO05D006633 4.5e-64 248.4 196 64.8
Duzib052G0352 Durio zibethinus HOM05D005520 ORTHO05D006633 5.9e-64 248.1 192 64.6
GSVIVG01037859001 Vitis vinifera HOM05D005520 ORTHO05D006633 5.9e-64 248.1 199 65.3
Thhalv10011740m.g Eutrema salsugineum HOM05D005520 ORTHO05D006633 7.7e-64 247.7 196 63.8
Haze_10245 Corylus avellana HOM05D005520 ORTHO05D006633 1.3e-63 246.9 194 64.9
Sp1g36760 Schrenkiella parvula HOM05D005520 ORTHO05D006633 1.3e-63 246.9 195 60.5
Cfa004647 Carpinus fangiana HOM05D005520 ORTHO05D006633 1.7e-63 246.5 194 63.9
Actinidia34369 Actinidia chinensis HOM05D005520 ORTHO05D006633 2.3e-63 246.1 198 63.1
Carub.0001s3909 Capsella rubella HOM05D005520 ORTHO05D006633 2.3e-63 246.1 195 62.6
HanXRQChr03g0069991 Helianthus annuus HOM05D005520 ORTHO05D006633 3.8e-63 245.4 199 62.3
MSTRG.16689 Avicennia marina HOM05D005520 ORTHO05D006633 5.0e-63 245.0 195 64.6
MD10G1103100 Malus domestica HOM05D005520 ORTHO05D006633 6.6e-63 244.6 196 62.8
AL1G57420 Arabidopsis lyrata HOM05D005520 ORTHO05D006633 8.6e-63 244.2 195 61.0
Potri.009G090200 Populus trichocarpa HOM05D005520 ORTHO05D006633 8.6e-63 244.2 202 63.9
C03p89340 Brassica napus HOM05D005520 ORTHO05D006633 1.1e-62 243.8 197 60.4
Manes.10G081300 Manihot esculenta HOM05D005520 ORTHO05D006633 1.5e-62 243.4 198 62.1
BolC3t21249H Brassica oleracea HOM05D005520 ORTHO05D006633 2.5e-62 242.7 197 59.9
CSS0014981 Camellia sinensis var. sinensis HOM05D005520 ORTHO05D006633 3.3e-62 242.3 199 59.8
BraA08t32384Z Brassica rapa HOM05D005520 ORTHO05D006633 5.5e-62 241.5 195 60.0
COL.COLO4_32538 Corchorus olitorius HOM05D005520 ORTHO05D006633 5.5e-62 241.5 213 61.5
Rhsim11G0154200 Rhododendron simsii HOM05D005520 ORTHO05D006633 5.5e-62 241.5 202 59.4
EL10Ac8g19365 Beta vulgaris HOM05D005520 ORTHO05D006633 7.2e-62 241.1 202 62.4
Rhsim05G0090000 Rhododendron simsii HOM05D005520 ORTHO05D006633 1.2e-61 240.4 203 61.1
Sabra09G0069800 Salix brachista HOM05D005520 ORTHO05D006633 1.6e-61 240.0 202 61.9
A08p03510 Brassica napus HOM05D005520 ORTHO05D006633 2.1e-61 239.6 195 59.0
Migut.F01600 Erythranthe guttata HOM05D005520 ORTHO05D006633 4.7e-61 238.4 200 61.0
arahy.Tifrunner.gnm1.ann1.ZQ2RMB Arachis hypogaea HOM05D005520 ORTHO05D006633 1.8e-60 236.5 197 61.4
Ciclev10029310m.g Citrus clementina HOM05D005520 ORTHO05D006633 3.0e-60 235.7 198 62.6
FAN20G2059 Fragaria x ananassa HOM05D005520 ORTHO05D006633 3.0e-60 235.7 220 55.5
Lsat_1_v5_gn_9_112480 Lactuca sativa HOM05D005520 ORTHO05D006633 3.0e-60 235.7 203 58.1
PGR042G2710 Punica granatum HOM05D005520 ORTHO05D006633 6.8e-60 234.6 196 61.2
DCAR_021961 Daucus carota HOM05D005520 ORTHO05D006633 2.0e-59 233.0 200 60.0
CARHR039940 Cardamine hirsuta HOM05D005520 ORTHO05D006633 4.4e-59 231.9 196 57.7
Medtr1g050465 Medicago truncatula HOM05D005520 ORTHO05D006633 4.4e-59 231.9 195 59.0
Sed0007262 Sechium edule HOM05D005520 ORTHO05D006633 7.5e-59 231.1 195 62.1
Medtr8g045480 Medicago truncatula HOM05D005520 ORTHO05D006633 2.2e-58 229.6 195 59.0
VMungo0251G2197 Vigna mungo HOM05D005520 ORTHO05D006633 3.7e-58 228.8 200 59.0
Lj3g0017538 Lotus japonicus HOM05D005520 ORTHO05D006633 6.3e-58 228.0 201 59.2
Gohir.D04G160500 Gossypium hirsutum HOM05D005520 ORTHO05D006633 1.1e-57 227.3 193 62.7
Gorai.012G148200 Gossypium raimondii HOM05D005520 ORTHO05D006633 1.1e-57 227.3 193 62.7
Gohir.A04G118800 Gossypium hirsutum HOM05D005520 ORTHO05D006633 1.4e-57 226.9 194 61.9
Phvul.003G276100 Phaseolus vulgaris HOM05D005520 ORTHO05D006633 1.8e-57 226.5 196 58.2
SalBow6G6323 Salvia bowleyana HOM05D005520 ORTHO05D006633 1.8e-57 226.5 226 56.2
TWI14G1052 Tripterygium wilfordii HOM05D005520 ORTHO05D006633 1.8e-57 226.5 202 61.4
arahy.Tifrunner.gnm1.ann1.DF92AY Arachis hypogaea HOM05D005520 ORTHO05D006633 2.4e-57 226.1 212 57.1
TPR.G14598 Trifolium pratense HOM05D005520 ORTHO05D006633 3.1e-57 225.7 196 57.7
SalBow6G1186 Salvia bowleyana HOM05D005520 ORTHO05D006633 7.0e-57 224.6 226 55.8
QL11p031741 Quercus lobata HOM05D005520 ORTHO05D006633 1.2e-56 223.8 265 48.7
TPR.G18583 Trifolium pratense HOM05D005520 ORTHO05D006633 1.2e-56 223.8 198 56.6
unitig_37.g12800 Utricularia gibba HOM05D005520 ORTHO05D006633 1.2e-56 223.8 197 58.9
Cc02_g19680 Coffea canephora HOM05D005520 ORTHO05D006633 1.6e-56 223.4 266 48.1
ECA240G0181 Erigeron canadensis HOM05D005520 ORTHO05D006633 1.6e-56 223.4 126 79.4
Lj5A217G90 Lonicera japonica HOM05D005520 ORTHO05D006633 1.6e-56 223.4 125 82.4
Cpa.g.sc106.74 Carica papaya HOM05D005520 ORTHO05D006633 3.5e-56 222.2 206 55.3
PSO541G2579 Papaver somniferum HOM05D005520 ORTHO05D006633 3.5e-56 222.2 202 56.4
Lalb_Chr24g0402091 Lupinus albus HOM05D005520 ORTHO05D006633 5.9e-56 221.5 198 57.1
Psat4g180760 Pisum sativum HOM05D005520 ORTHO05D006633 7.8e-56 221.1 195 56.9
SGA_v2.0_scaffold225G43026 Striga asiatica HOM05D005520 ORTHO05D006633 5.0e-55 218.4 132 74.2
RcHm_v2.0_Chr6g0253051 Rosa chinensis HOM05D005520 ORTHO05D006633 6.6e-55 218.0 127 77.2
Gohir.D13G044800 Gossypium hirsutum HOM05D005520 ORTHO05D006633 8.6e-55 217.6 198 59.6
PSO675G3202 Papaver somniferum HOM05D005520 ORTHO05D006633 1.5e-54 216.9 204 55.4
Gorai.013G049600 Gossypium raimondii HOM05D005520 ORTHO05D006633 1.9e-54 216.5 198 59.6
CANSAT25G2379 Cannabis sativa HOM05D005520 ORTHO05D006633 5.6e-54 214.9 200 57.0
CDE04G3180 Ceratophyllum demersum HOM05D005520 ORTHO05D006633 2.8e-53 212.6 195 52.3
ClCG10G010520 Citrullus lanatus HOM05D005520 ORTHO05D006633 2.8e-53 212.6 195 56.9
FAN15G3606 Fragaria x ananassa HOM05D005520 ORTHO05D006633 1.0e-52 210.7 200 56.0
TAR625G0105 Trochodendron aralioides HOM05D000641 ORTHO05D006633 1.8e-52 209.9 131 74.0
Migut.B00427 Erythranthe guttata HOM05D005520 ORTHO05D006633 2.3e-52 209.5 119 79.0
Zm00001eb007440 Zea mays HOM05D005520 ORTHO05D006633 2.3e-52 209.5 169 60.9
Lj4g0000264 Lotus japonicus HOM05D005520 ORTHO05D006633 5.2e-52 208.4 201 55.2
BcaB04g17288 Brassica carinata HOM05D005520 ORTHO05D006633 7.5e-51 204.5 206 53.9
Aa31LG10G4210 Aethionema arabicum HOM05D001821 ORTHO05D006633 3.7e-50 202.2 182 55.5
FAN24G1644 Fragaria x ananassa HOM05D005520 ORTHO05D006633 3.7e-50 202.2 209 53.1
RhsimUnG0125400 Rhododendron simsii HOM05D005520 ORTHO05D006633 1.1e-49 200.7 202 53.0
CDE07G0521 Ceratophyllum demersum HOM05D005520 ORTHO05D006633 2.4e-49 199.5 119 73.9
Migut.B00429 Erythranthe guttata HOM05D005520 ORTHO05D009373 5.4e-49 198.4 183 56.8
HPP92_023672 Vanilla planifolia HOM05D005520 ORTHO05D006633 9.2e-49 197.6 197 51.3
HPP92_023689 Vanilla planifolia HOM05D005520 ORTHO05D006633 1.6e-48 196.8 197 51.3
AT1G49880 Arabidopsis thaliana HOM05D005520 ORTHO05D006633 6.0e-48 194.9 157 61.1
Glyma.13G199600 Glycine max HOM05D005520 ORTHO05D006633 7.8e-48 194.5 196 54.6
SEGI_34662 Sequoiadendron giganteum HOM05D005520 ORTHO05D006633 1.1e-46 190.7 120 70.0
Pp3c2_36820 Physcomitrium patens HOM05D005520 ORTHO05D006633 1.6e-45 186.8 122 68.9
RcHm_v2.0_Chr6g0253221 Rosa chinensis HOM05D005520 ORTHO05D006633 5.2e-44 181.8 146 62.3
SMO172G0176 Selaginella moellendorffii HOM05D005520 ORTHO05D006633 5.2e-44 181.8 118 68.6
Oeu009678.2 Olea europaea HOM05D005520 ORTHO05D006633 2.0e-43 179.9 256 43.4
Mapoly0036s0053 Marchantia polymorpha HOM05D005520 ORTHO05D006633 3.4e-43 179.1 149 58.4
Atru.chr5.2403 Acer truncatum HOM05D005520 ORTHO05D006633 7.0e-41 171.4 99 78.8
CBR_g2851 Chara braunii HOM05D005520 ORTHO05D006633 1.7e-39 166.8 119 57.1
Psat7g087120 Pisum sativum HOM05D005520 ORTHO05D006633 3.0e-39 166.0 171 55.0
AUR62022505 Chenopodium quinoa HOM05D005520 ORTHO05D006633 2.5e-38 162.9 158 56.3
Psat6g139520 Pisum sativum HOM05D005520 ORTHO05D006633 6.2e-37 158.3 170 51.2
Pp3c19_18310 Physcomitrium patens HOM05D005520 ORTHO05D006633 8.1e-37 157.9 126 55.6
FvH4_2g03990 Fragaria vesca HOM05D005520 ORTHO05D006633 1.8e-36 156.8 135 59.3
CBR_g31027 Chara braunii HOM05D005520 ORTHO05D006633 4.0e-36 155.6 119 54.6
Actinidia27983 Actinidia chinensis HOM05D005520 ORTHO05D006633 5.2e-36 155.2 195 46.2
vmacro01971 Vaccinium macrocarpon HOM05D005520 ORTHO05D006633 2.0e-35 153.3 108 69.4
Aqoxy6G02716 Aquilegia oxysepala HOM05D005520 ORTHO05D006633 2.5e-30 136.3 164 49.4
Thecc.02G114500 Theobroma cacao HOM05D005520 ORTHO05D006633 4.3e-30 135.6 132 56.1
Ca_24141_v3 Cicer arietinum L. HOM05D005520 ORTHO05D006633 2.8e-29 132.9 158 50.0
Potri.001G296000 Populus trichocarpa HOM05D005520 ORTHO05D006633 1.4e-28 130.6 205 39.0
Hund12620 Selenicereus undatus HOM05D005520 ORTHO05D006633 1.8e-28 130.2 265 36.2
Cre03.g173200 Chlamydomonas reinhardtii HOM05D005520 ORTHO05D006633 6.8e-28 128.3 106 50.9
Nn1g07564 Nelumbo nucifera HOM05D005520 ORTHO05D006633 2.0e-27 126.7 138 54.3
Medtr0857s0010 Medicago truncatula HOM05D005520 ORTHO05D006633 3.2e-25 119.4 60 86.7
CBR_g38847 Chara braunii HOM05D005520 ORTHO05D006633 2.7e-24 116.3 110 45.5
CSS0022898 Camellia sinensis var. sinensis HOM05D005520 ORTHO05D006633 4.6e-24 115.5 92 58.7
MCO01G292 Micromonas commoda HOM05D005520 ORTHO05D006633 5.6e-22 108.6 100 49.0
PRCOL_00001319 Prasinoderma coloniale HOM05D000442 ORTHO05D001718 9.6e-22 107.8 112 42.9
Glyma.15G237900 Glycine max HOM05D005520 ORTHO05D006633 2.1e-21 106.7 114 57.0
Haze_26784 Corylus avellana HOM05D005520 ORTHO05D006633 1.1e-20 104.4 104 39.4
Cre14.g633000 Chlamydomonas reinhardtii HOM05D005520 ORTHO05D006633 3.4e-19 99.4 99 42.4
Ciclev10029975m.g Citrus clementina HOM05D005520 ORTHO05D006633 4.4e-19 99.0 61 72.1
Aqoxy6G02727 Aquilegia oxysepala HOM05D005520 ORTHO05D006633 7.6e-19 98.2 60 70.0
MELO3C017991.2 Cucumis melo HOM05D005520 ORTHO05D006633 2.9e-18 96.3 114 50.0
ATR0165G041 Amborella trichopoda HOM05D005520 ORTHO05D006633 2.5e-14 83.2 116 44.0
MCO01G319 Micromonas commoda HOM05D005520 ORTHO05D006633 3.3e-14 82.8 80 45.0
Cfa024926 Carpinus fangiana HOM05D000137 ORTHO05D122446 1.4e-12 77.4 148 27.7
SHI05087 Sapria himalayana HOM05D005520 ORTHO05D006633 1.8e-12 77.0 42 73.8
CsaV3_4G000440 Cucumis sativus L. HOM05D005520 ORTHO05D006633 1.2e-11 74.3 114 42.1
Os03g0206300 Oryza sativa ssp. japonica HOM05D005520 ORTHO05D006633 9.9e-11 71.2 50 58.0
AL1G58430 Arabidopsis lyrata HOM05D005520 ORTHO05D006633 5.4e-09 65.5 117 33.3
A06p03510 Brassica napus HOM05D005520 ORTHO05D006633 4.6e-08 62.4 37 64.9
BraA06t23559Z Brassica rapa HOM05D005520 ORTHO05D006633 4.6e-08 62.4 37 64.9
TPR.G17607 Trifolium pratense HOM05D005520 ORTHO05D006633 1.3e-07 60.8 100 41.0
Atru.chr9.1169 Acer truncatum HOM05D003028 ORTHO05D037933 3.0e-07 59.7 36 66.7
Aqoxy6G02726 Aquilegia oxysepala HOM05D000001 ORTHO05D077907 7.4e-06 55.1 113 34.5
BolC6t35595H Brassica oleracea HOM05D040450 ORTHO05D033487 7.4e-06 55.1 26 84.6


User provided reference genes

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