Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0008364g0010 Nicotiana tabacum HOM05D005413 ORTHO05D006536 1.8e-117 426.0 233 100.0
Nitab4.5_0000158g0110 Nicotiana tabacum HOM05D005413 ORTHO05D006536 3.9e-99 365.2 220 92.7
PGSC0003DMG400002998 Solanum tuberosum HOM05D005413 ORTHO05D006536 8.3e-86 320.9 218 82.6
Peaxi162Scf00429g00512 Petunia axillaris HOM05D005413 ORTHO05D006536 3.2e-85 318.9 213 78.4
Sopen11g029620 Solanum pennellii HOM05D005413 ORTHO05D006536 1.7e-83 313.2 218 81.2
Solyc11g071950.3 Solanum lycopersicum HOM05D005413 ORTHO05D006536 1.1e-82 310.5 218 80.3
CSS0023574 Camellia sinensis var. sinensis HOM05D005413 ORTHO05D006536 8.7e-67 257.7 220 60.9
Lj2A950G18 Lonicera japonica HOM05D005413 ORTHO05D006536 1.9e-66 256.5 222 60.8
Actinidia37056 Actinidia chinensis HOM05D005413 ORTHO05D006536 4.8e-65 251.9 220 60.5
Actinidia11676 Actinidia chinensis HOM05D005413 ORTHO05D006536 3.1e-64 249.2 220 60.9
Dinv18856 Davidia involucrata HOM05D005413 ORTHO05D006536 3.4e-63 245.7 220 59.1
GSVIVG01037530001 Vitis vinifera HOM05D005413 ORTHO05D006536 2.2e-62 243.0 220 57.7
Hma1.2p1_0101F.1_g049660 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 6.4e-62 241.5 220 59.1
Ciclev10028962m.g Citrus clementina HOM05D005413 ORTHO05D006536 2.4e-61 239.6 220 55.5
RcHm_v2.0_Chr5g0049091 Rosa chinensis HOM05D005413 ORTHO05D006536 4.2e-61 238.8 222 56.8
Cc01_g07840 Coffea canephora HOM05D005413 ORTHO05D006536 5.4e-61 238.4 221 59.3
Thecc.09G267600 Theobroma cacao HOM05D005413 ORTHO05D006536 5.4e-61 238.4 228 55.7
FvH4_3g26150 Fragaria vesca HOM05D005413 ORTHO05D006536 2.1e-60 236.5 220 56.4
Duzib170G0305 Durio zibethinus HOM05D005413 ORTHO05D006536 3.5e-60 235.7 220 55.9
Oeu031446.2 Olea europaea HOM05D005413 ORTHO05D006536 3.5e-60 235.7 223 54.7
COL.COLO4_00160 Corchorus olitorius HOM05D005413 ORTHO05D006536 4.6e-60 235.3 218 57.8
FAN11G2501 Fragaria x ananassa HOM05D005413 ORTHO05D006536 3.0e-59 232.6 216 56.5
Duzib168G1403 Durio zibethinus HOM05D005413 ORTHO05D006536 8.7e-59 231.1 220 57.3
QL01p019216 Quercus lobata HOM05D005413 ORTHO05D006536 8.7e-59 231.1 217 56.7
FAN25G1874 Fragaria x ananassa HOM05D005413 ORTHO05D006536 2.5e-58 229.6 216 55.6
MSTRG.12398 Avicennia marina HOM05D005413 ORTHO05D006536 4.3e-58 228.8 221 56.6
CiPaw.14G092700 Carya illinoinensis HOM05D005413 ORTHO05D006536 5.6e-58 228.4 217 56.2
FAN16G0400 Fragaria x ananassa HOM05D005413 ORTHO05D006536 9.6e-58 227.6 217 54.8
FAN16G2334 Fragaria x ananassa HOM05D005413 ORTHO05D006536 9.6e-58 227.6 217 54.8
Gohir.A05G077100 Gossypium hirsutum HOM05D005413 ORTHO05D006536 4.0e-56 222.2 218 54.6
Gohir.D05G079900 Gossypium hirsutum HOM05D005413 ORTHO05D006536 6.9e-56 221.5 218 55.0
Gorai.009G081500 Gossypium raimondii HOM05D005413 ORTHO05D006536 6.9e-56 221.5 218 55.0
TAR623G0045 Trochodendron aralioides HOM05D005413 ORTHO05D006536 6.9e-56 221.5 220 53.6
Atru.chr3.3078 Acer truncatum HOM05D005413 ORTHO05D006536 1.1e-53 214.2 220 52.7
Atru.chr3.3087 Acer truncatum HOM05D005413 ORTHO05D006536 1.1e-53 214.2 220 52.7
Prupe.6G147200 Prunus persica HOM05D005413 ORTHO05D006536 1.9e-53 213.4 222 52.7
MD11G1174800 Malus domestica HOM05D005413 ORTHO05D006536 3.2e-53 212.6 222 52.3
TPR.G4599 Trifolium pratense HOM05D005413 ORTHO05D006536 4.2e-53 212.2 221 52.0
ECA238G0598 Erigeron canadensis HOM05D005413 ORTHO05D006536 9.3e-53 211.1 225 56.0
vmacro14313 Vaccinium macrocarpon HOM05D005413 ORTHO05D006536 1.2e-52 210.7 271 47.2
TWI79G1192 Tripterygium wilfordii HOM05D005413 ORTHO05D006536 1.6e-52 210.3 220 52.3
Medtr4g050330 Medicago truncatula HOM05D005413 ORTHO05D006536 1.3e-51 207.2 221 50.7
unitig_899.g15382 Utricularia gibba HOM05D005413 ORTHO05D006536 1.3e-51 207.2 228 51.8
arahy.Tifrunner.gnm1.ann1.C0JSMI Arachis hypogaea HOM05D005413 ORTHO05D006536 3.9e-51 205.7 221 51.1
Manes.11G103700 Manihot esculenta HOM05D005413 ORTHO05D006536 3.9e-51 205.7 221 51.1
Nn2g14375 Nelumbo nucifera HOM05D005413 ORTHO05D006536 3.9e-51 205.7 220 50.0
arahy.Tifrunner.gnm1.ann1.K4CWT5 Arachis hypogaea HOM05D005413 ORTHO05D006536 6.7e-51 204.9 221 51.1
Lalb_Chr19g0136161 Lupinus albus HOM05D005413 ORTHO05D006536 5.6e-50 201.8 220 51.8
Migut.D02382 Erythranthe guttata HOM05D005413 ORTHO05D006536 3.7e-49 199.1 223 52.9
Lj3g0006130 Lotus japonicus HOM05D005413 ORTHO05D006536 8.2e-49 198.0 221 49.8
Ca_19483_v3 Cicer arietinum L. HOM05D005413 ORTHO05D006536 1.8e-48 196.8 221 48.9
Rhsim01G0199900 Rhododendron simsii HOM05D005413 ORTHO05D006536 9.0e-48 194.5 322 39.8
VMungo1127G2102 Vigna mungo HOM05D005413 ORTHO05D006536 1.2e-47 194.1 221 50.7
CsaV3_6G038630 Cucumis sativus L. HOM05D005413 ORTHO05D006536 4.5e-47 192.2 215 48.8
ClCG02G022490 Citrullus lanatus HOM05D005413 ORTHO05D006536 1.0e-46 191.0 215 48.4
MELO3C014525.2 Cucumis melo HOM05D005413 ORTHO05D006536 1.0e-46 191.0 215 48.8
Eucgr.J00585 Eucalyptus grandis HOM05D005413 ORTHO05D006536 1.0e-46 191.0 217 49.8
Psat7g200680 Pisum sativum HOM05D005413 ORTHO05D006536 2.2e-46 189.9 222 48.6
TAR633G2414 Trochodendron aralioides HOM05D005413 ORTHO05D006536 2.9e-46 189.5 216 48.6
Phvul.011G100200 Phaseolus vulgaris HOM05D005413 ORTHO05D006536 3.8e-46 189.1 219 49.3
MD03G1159500 Malus domestica HOM05D005413 ORTHO05D006536 8.4e-46 188.0 222 46.8
Rhsim01G0199600 Rhododendron simsii HOM05D005413 ORTHO05D006536 8.4e-46 188.0 335 37.9
DCAR_018207 Daucus carota HOM05D005413 ORTHO05D006536 2.5e-45 186.4 226 46.5
MBI15_g31416_MAGBIO Magnolia biondii HOM05D005413 ORTHO05D006536 2.5e-45 186.4 217 48.4
FAN21G0466 Fragaria x ananassa HOM05D005413 ORTHO05D006536 6.0e-44 181.8 216 47.2
DCAR_012252 Daucus carota HOM05D005413 ORTHO05D006536 2.3e-43 179.9 232 47.4
PGR119G0748 Punica granatum HOM05D005413 ORTHO05D006536 6.7e-43 178.3 228 46.5
Glyma.12G095900 Glycine max HOM05D005413 ORTHO05D006536 8.7e-43 177.9 220 48.2
Lalb_Chr03g0028501 Lupinus albus HOM05D005413 ORTHO05D006536 8.7e-43 177.9 220 47.7
HanXRQChr05g0137071 Helianthus annuus HOM05D005413 ORTHO05D006536 6.3e-41 171.8 228 56.6
SalBow6G6902 Salvia bowleyana HOM05D005413 ORTHO05D006536 1.1e-40 171.0 210 49.0
Hund06812 Selenicereus undatus HOM05D005413 ORTHO05D006536 1.8e-40 170.2 217 45.6
Potri.010G244600 Populus trichocarpa HOM05D005413 ORTHO05D006536 5.3e-40 168.7 222 44.6
Dinv04422 Davidia involucrata HOM05D005413 ORTHO05D006536 6.9e-40 168.3 221 43.4
Glyma.11G171773 Glycine max HOM05D005413 ORTHO05D006536 4.5e-39 165.6 219 45.2
Aqoxy1G00612 Aquilegia oxysepala HOM05D005413 ORTHO05D006536 2.2e-38 163.3 220 40.5
Thhalv10014324m.g Eutrema salsugineum HOM05D005413 ORTHO05D006536 5.0e-38 162.2 224 43.3
Potri.008G001700 Populus trichocarpa HOM05D005413 ORTHO05D006536 2.5e-37 159.8 224 43.3
Sabra10G0191100 Salix brachista HOM05D005413 ORTHO05D006536 5.5e-37 158.7 217 43.3
Potri.008G015500 Populus trichocarpa HOM05D005413 ORTHO05D006536 7.2e-37 158.3 224 42.9
BcaC01g06609 Brassica carinata HOM05D005413 ORTHO05D006536 1.6e-36 157.1 225 43.6
BolC3t13687H Brassica oleracea HOM05D005413 ORTHO05D006536 1.6e-36 157.1 225 43.6
AUR62024117 Chenopodium quinoa HOM05D005413 ORTHO05D006536 2.1e-36 156.8 226 43.4
CSS0050484 Camellia sinensis var. sinensis HOM05D005413 ORTHO05D006536 4.6e-36 155.6 222 42.3
SGA_v2.0_scaffold22G09835 Striga asiatica HOM05D005413 ORTHO05D006536 6.1e-36 155.2 201 48.8
ATR1120G017 Amborella trichopoda HOM05D005413 ORTHO05D006536 7.9e-36 154.8 225 40.0
QL04p048808 Quercus lobata HOM05D005413 ORTHO05D006536 1.3e-35 154.1 230 43.0
C03p12140 Brassica napus HOM05D005413 ORTHO05D006536 1.8e-35 153.7 224 42.9
BraA03t10367Z Brassica rapa HOM05D005413 ORTHO05D006536 3.0e-35 152.9 224 42.9
Sabra08G0009400 Salix brachista HOM05D005413 ORTHO05D006536 1.9e-34 150.2 215 41.9
A03p10550 Brassica napus HOM05D005413 ORTHO05D006536 3.3e-34 149.4 224 42.4
Hma1.2p1_0098F.1_g048260 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 4.3e-34 149.1 213 42.3
Sed0018758 Sechium edule HOM05D005413 ORTHO05D006536 4.3e-34 149.1 180 46.7
PSO339G2181 Papaver somniferum HOM05D005413 ORTHO05D006536 9.7e-34 147.9 240 47.9
AUR62005613 Chenopodium quinoa HOM05D005413 ORTHO05D006536 1.3e-33 147.5 216 42.6
Sc09g0004800 Simmondsia chinensis HOM05D005413 ORTHO05D006536 1.7e-33 147.1 224 42.4
Sp6g23150 Schrenkiella parvula HOM05D005413 ORTHO05D006536 6.3e-33 145.2 221 39.8
PSO384G0849 Papaver somniferum HOM05D005413 ORTHO05D006536 3.1e-32 142.9 240 47.1
HPP92_015644 Vanilla planifolia HOM05D005413 ORTHO05D006536 9.1e-32 141.4 218 40.4
Os03g0274700 Oryza sativa ssp. japonica HOM05D005413 ORTHO05D006536 1.2e-31 141.0 229 42.4
Rhsim03G0094100 Rhododendron simsii HOM05D005413 ORTHO05D006536 1.2e-31 141.0 138 54.3
vmacro07276 Vaccinium macrocarpon HOM05D005413 ORTHO05D006536 2.0e-31 140.2 147 52.4
Zm00001eb012330 Zea mays HOM05D005413 ORTHO05D006536 5.9e-31 138.7 231 38.1
EL10Ac6g13493 Beta vulgaris HOM05D005413 ORTHO05D006536 1.7e-30 137.1 224 40.2
Thecc.10G119400 Theobroma cacao HOM05D005413 ORTHO05D006536 3.8e-30 136.0 221 39.4
Ah.03g136210 Amaranthus hybridus HOM05D005413 ORTHO05D006536 1.9e-29 133.7 231 40.7
CARHR191490 Cardamine hirsuta HOM05D005413 ORTHO05D006536 4.2e-29 132.5 227 40.1
CDE04G1023 Ceratophyllum demersum HOM05D005413 ORTHO05D006536 7.2e-29 131.7 219 39.7
Dinv03807 Davidia involucrata HOM05D005413 ORTHO05D006536 3.6e-28 129.4 180 43.9
Dinv33562 Davidia involucrata HOM05D005413 ORTHO05D006536 7.9e-28 128.3 93 67.7
CDE07G0886 Ceratophyllum demersum HOM05D005413 ORTHO05D006536 1.8e-27 127.1 215 43.7
SEGI_03865 Sequoiadendron giganteum HOM05D005413 ORTHO05D006536 2.3e-27 126.7 222 41.4
Cfa010502 Carpinus fangiana HOM05D005413 ORTHO05D006536 5.1e-27 125.6 221 35.3
Oeu033267.1 Olea europaea HOM05D005413 ORTHO05D006536 6.7e-27 125.2 212 39.6
Oeu029208.1 Olea europaea HOM05D005413 ORTHO05D006536 2.2e-25 120.2 96 67.7
Aa31LG1G13390 Aethionema arabicum HOM05D005413 ORTHO05D006536 4.8e-25 119.0 229 37.1
arahy.Tifrunner.gnm1.ann1.0IPW5R Arachis hypogaea HOM05D005413 ORTHO05D006536 1.4e-24 117.5 218 37.2
arahy.Tifrunner.gnm1.ann1.BD57S3 Arachis hypogaea HOM05D005413 ORTHO05D006536 3.1e-24 116.3 218 36.7
Lj5g0017620 Lotus japonicus HOM05D005413 ORTHO05D006536 4.1e-24 115.9 222 36.0
AT5G22040 Arabidopsis thaliana HOM05D005413 ORTHO05D006536 1.2e-23 114.4 217 35.9
BcaB01g04747 Brassica carinata HOM05D005413 ORTHO05D006536 1.5e-23 114.0 215 37.7
Lsat_1_v5_gn_2_106300 Lactuca sativa HOM05D005413 ORTHO05D006536 2.0e-23 113.6 197 39.6
Haze_03431 Corylus avellana HOM05D005413 ORTHO05D006536 4.5e-23 112.5 141 43.3
TPR.G10267 Trifolium pratense HOM05D005413 ORTHO05D006536 8.5e-22 108.2 222 34.2
AL6G33000 Arabidopsis lyrata HOM05D005413 ORTHO05D006536 1.9e-21 107.1 217 35.9
SEGI_29962 Sequoiadendron giganteum HOM05D005852 ORTHO05D000002 5.5e-21 105.5 229 33.2
Medtr1g090350 Medicago truncatula HOM05D005413 ORTHO05D006536 7.2e-21 105.1 224 31.2
THA.LOC104815083 Tarenaya hassleriana HOM05D005413 ORTHO05D006536 7.2e-21 105.1 233 36.1
Ca_10423_v3 Cicer arietinum L. HOM05D005413 ORTHO05D006536 2.7e-20 103.2 148 38.5
Carub.0006s1968 Capsella rubella HOM05D005413 ORTHO05D006536 1.8e-19 100.5 217 32.7
Lj2C36T10 Lonicera japonica HOM05D005413 ORTHO05D006536 3.0e-19 99.8 196 37.2
Haze_03425 Corylus avellana HOM05D005413 ORTHO05D006536 5.2e-19 99.0 217 31.3
Phvul.007G136700 Phaseolus vulgaris HOM05D005413 ORTHO05D006536 5.2e-19 99.0 185 36.2
Cpa.g.sc33.125 Carica papaya HOM05D005413 ORTHO05D006536 4.4e-18 95.9 83 59.0
Lalb_Chr21g0312751 Lupinus albus HOM05D005413 ORTHO05D006536 4.4e-18 95.9 142 42.3
AagrBONN_evm.TU.Sc2ySwM_344.2258 Anthoceros agrestis HOM05D004246 ORTHO05D005035 3.1e-16 89.7 226 32.7
BcaNung07133 Brassica carinata HOM05D005413 ORTHO05D006536 5.0e-14 82.4 137 38.7
Mapoly0068s0092 Marchantia polymorpha HOM05D005852 ORTHO05D006688 6.5e-14 82.0 225 32.4
THA.LOC104810942 Tarenaya hassleriana HOM05D001091 ORTHO05D001020 6.5e-14 82.0 204 29.9
PGR044G1324 Punica granatum HOM05D003044 ORTHO05D001869 3.7e-09 66.2 69 49.3
SMO236G0022 Selaginella moellendorffii HOM05D017472 ORTHO05D006688 9.1e-08 61.6 83 43.4
BcaB05g22753 Brassica carinata HOM05D005413 ORTHO05D006536 1.7e-06 57.4 51 54.9


User provided reference genes

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