Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0008354g0010 Nicotiana tabacum HOM05D004345 ORTHO05D005192 0.0e+00 1875.5 920 100.0
Nitab4.5_0001423g0010 Nicotiana tabacum HOM05D004345 ORTHO05D005192 0.0e+00 1649.8 902 90.7
Nitab4.5_0001903g0100 Nicotiana tabacum HOM05D004345 ORTHO05D005192 0.0e+00 1577.8 952 85.0
Sopen01g042020 Solanum pennellii HOM05D004345 ORTHO05D005192 0.0e+00 1316.2 914 73.3
Solyc01g098450.4 Solanum lycopersicum HOM05D004345 ORTHO05D005192 0.0e+00 1307.7 914 72.8
Peaxi162Scf00434g00066 Petunia axillaris HOM05D004345 ORTHO05D005192 0.0e+00 1283.5 917 70.7
Dinv36001 Davidia involucrata HOM05D004345 ORTHO05D005192 1.4e-189 667.5 893 46.0
Actinidia34666 Actinidia chinensis HOM05D004345 ORTHO05D005192 1.9e-181 640.6 924 43.3
Lj8C411T10 Lonicera japonica HOM05D004345 ORTHO05D005192 1.8e-179 634.0 842 45.7
MSTRG.24391 Avicennia marina HOM05D004345 ORTHO05D005192 2.4e-176 623.6 961 41.0
Prupe.2G050600 Prunus persica HOM05D004345 ORTHO05D005192 1.3e-174 617.8 936 42.0
Dinv35989 Davidia involucrata HOM05D004345 ORTHO05D004155 4.6e-172 609.4 912 43.0
Cfa020657 Carpinus fangiana HOM05D004345 ORTHO05D005192 1.8e-171 607.4 948 41.0
Haze_18940 Corylus avellana HOM05D004345 ORTHO05D005192 3.3e-170 603.2 935 41.7
CANSAT21G1743 Cannabis sativa HOM05D004345 ORTHO05D005192 9.0e-168 595.1 941 41.4
Cc07_g15690 Coffea canephora HOM05D004345 ORTHO05D005192 3.8e-166 589.7 955 40.5
CiPaw.12G040000 Carya illinoinensis HOM05D004345 ORTHO05D005192 5.0e-166 589.3 946 41.1
Migut.N02797 Erythranthe guttata HOM05D004345 ORTHO05D005192 3.2e-165 586.6 956 39.1
CiPaw.16G081600 Carya illinoinensis HOM05D004345 ORTHO05D005192 1.1e-162 578.2 945 40.3
QL09p016785 Quercus lobata HOM05D004345 ORTHO05D005192 2.5e-162 577.0 930 40.0
FAN18G0597 Fragaria x ananassa HOM05D004345 ORTHO05D005192 4.8e-161 572.8 927 39.5
QL04p019450 Quercus lobata HOM05D004345 ORTHO05D005192 1.1e-160 571.6 915 40.7
MD04G1026400 Malus domestica HOM05D004345 ORTHO05D005192 4.1e-160 569.7 940 38.9
FvH4_5g25850 Fragaria vesca HOM05D004345 ORTHO05D005192 5.3e-160 569.3 927 39.3
Lsat_1_v5_gn_8_70480 Lactuca sativa HOM05D004345 ORTHO05D005192 5.3e-160 569.3 923 39.5
Manes.14G172500 Manihot esculenta HOM05D004345 ORTHO05D005192 6.9e-160 568.9 934 39.2
CSS0030547 Camellia sinensis var. sinensis HOM05D004345 ORTHO05D005192 1.5e-159 567.8 758 44.3
FAN13G0999 Fragaria x ananassa HOM05D004345 ORTHO05D005192 3.8e-158 563.1 927 39.2
Ciclev10000213m.g Citrus clementina HOM05D004345 ORTHO05D005192 1.1e-157 561.6 937 40.0
FAN04G0730 Fragaria x ananassa HOM05D004345 ORTHO05D005192 1.1e-157 561.6 925 38.8
SalBow3G2318 Salvia bowleyana HOM05D004345 ORTHO05D005192 1.9e-157 560.8 914 38.8
QL07p000534 Quercus lobata HOM05D004345 ORTHO05D005192 5.5e-157 559.3 930 40.1
Gohir.A11G329500 Gossypium hirsutum HOM05D004345 ORTHO05D005192 1.0e-155 555.1 929 39.2
Nn1g01729 Nelumbo nucifera HOM05D004345 ORTHO05D005192 3.3e-154 550.1 956 39.1
Gorai.007G379000 Gossypium raimondii HOM05D004345 ORTHO05D005192 1.4e-152 544.7 932 39.3
DCAR_009432 Daucus carota HOM05D004345 ORTHO05D005192 1.8e-152 544.3 919 38.5
MELO3C021732.2 Cucumis melo HOM05D004345 ORTHO05D005192 1.2e-151 541.6 928 38.7
CsaV3_1G046170 Cucumis sativus L. HOM05D004345 ORTHO05D005192 1.2e-151 541.6 931 38.6
Sabra12G0028400 Salix brachista HOM05D004345 ORTHO05D005192 2.6e-151 540.4 946 39.0
Potri.012G041300 Populus trichocarpa HOM05D004345 ORTHO05D005192 2.2e-150 537.3 946 38.5
Glyma.10G030100 Glycine max HOM05D004345 ORTHO05D005192 8.5e-150 535.4 926 38.1
TWI60G1145 Tripterygium wilfordii HOM05D004345 ORTHO05D005192 2.5e-149 533.9 931 38.1
Glyma.02G144000 Glycine max HOM05D004345 ORTHO05D005192 6.7e-147 525.8 941 38.2
Rhsim12G0029000 Rhododendron simsii HOM05D004345 ORTHO05D005192 3.3e-146 523.5 810 40.7
CiPaw.12G046900 Carya illinoinensis HOM05D004345 ORTHO05D005192 9.7e-146 521.9 938 38.9
Phvul.011G090800 Phaseolus vulgaris HOM05D004345 ORTHO05D005192 9.7e-146 521.9 932 38.0
ECA238G4368 Erigeron canadensis HOM05D004345 ORTHO05D005192 7.0e-144 515.8 921 36.5
Sed0027926 Sechium edule HOM05D004345 ORTHO05D005192 9.1e-144 515.4 929 37.6
Lj5g0026700 Lotus japonicus HOM05D004345 ORTHO05D005192 2.0e-143 514.2 941 38.5
Psat5g128760 Pisum sativum HOM05D004345 ORTHO05D005192 3.5e-143 513.5 929 36.8
vmacro01076 Vaccinium macrocarpon HOM05D004345 ORTHO05D005192 5.0e-142 509.6 930 37.6
HanXRQChr07g0196981 Helianthus annuus HOM05D004345 ORTHO05D005192 1.1e-141 508.4 925 36.8
VMungo1215G1527 Vigna mungo HOM05D004345 ORTHO05D005192 1.9e-141 507.7 919 37.8
TWI31G0574 Tripterygium wilfordii HOM05D004345 ORTHO05D005192 6.1e-140 502.7 917 37.7
VMungo1127G1998 Vigna mungo HOM05D004345 ORTHO05D005192 8.0e-140 502.3 920 37.1
TPR.G10330 Trifolium pratense HOM05D004345 ORTHO05D005192 1.4e-139 501.5 935 37.6
Hund17623 Selenicereus undatus HOM05D004345 ORTHO05D005192 9.8e-138 495.4 940 36.8
Gohir.D11G348700 Gossypium hirsutum HOM05D004345 ORTHO05D005192 2.7e-135 487.3 723 40.9
ECA234G4090 Erigeron canadensis HOM05D004345 ORTHO05D005192 4.2e-133 479.9 925 36.2
Lalb_Chr21g0307461 Lupinus albus HOM05D004345 ORTHO05D005192 9.4e-133 478.8 930 35.9
Medtr3g069120 Medicago truncatula HOM05D004345 ORTHO05D005192 9.4e-133 478.8 938 37.2
Hund25524 Selenicereus undatus HOM05D004345 ORTHO05D005192 1.6e-132 478.0 968 35.1
Duzib116G0224 Durio zibethinus HOM05D004345 ORTHO05D005192 1.0e-131 475.3 949 36.9
PGR044G2251 Punica granatum HOM05D004345 ORTHO05D005192 9.8e-130 468.8 914 36.8
Eucgr.C04176 Eucalyptus grandis HOM05D004345 ORTHO05D005192 1.7e-129 468.0 929 36.7
Eucgr.K02289 Eucalyptus grandis HOM05D004345 ORTHO05D005192 1.8e-128 464.5 930 36.3
AUR62032951 Chenopodium quinoa HOM05D004345 ORTHO05D005192 5.9e-127 459.5 944 35.0
Aqoxy4G03088 Aquilegia oxysepala HOM05D004345 ORTHO05D005192 1.0e-123 448.7 952 34.8
Ah.01g012750 Amaranthus hybridus HOM05D004345 ORTHO05D005192 1.8e-123 448.0 946 33.3
EL10Ac9g22980 Beta vulgaris HOM05D000200 ORTHO05D001546 1.2e-122 445.3 926 34.9
Ca_09724_v3 Cicer arietinum L. HOM05D004345 ORTHO05D005192 7.5e-122 442.6 755 37.7
Oeu031657.1 Olea europaea HOM05D004345 ORTHO05D005192 1.3e-121 441.8 542 47.2
unitig_744.g24116 Utricularia gibba HOM05D004345 ORTHO05D005192 2.3e-118 431.0 891 33.6
SHI21683 Sapria himalayana HOM05D004345 ORTHO05D005192 1.2e-114 418.7 900 33.8
Aqoxy4G01527 Aquilegia oxysepala HOM05D004345 ORTHO05D005192 9.8e-114 415.6 932 33.9
THA.LOC104803578 Tarenaya hassleriana HOM05D004345 ORTHO05D005192 4.1e-112 410.2 931 34.2
Aa31LG8G3600 Aethionema arabicum HOM05D004345 ORTHO05D005192 1.6e-108 398.3 874 33.5
CiPaw.12G047000 Carya illinoinensis HOM05D004345 ORTHO05D005192 7.5e-106 389.4 761 37.6
Dinv39346 Davidia involucrata HOM05D004345 ORTHO05D005192 7.5e-106 389.4 649 40.2
RcHm_v2.0_Chr7g0216331 Rosa chinensis HOM05D004345 ORTHO05D005192 4.9e-105 386.7 895 32.7
Sp3g16450 Schrenkiella parvula HOM05D004345 ORTHO05D005192 8.3e-105 386.0 890 32.7
AL3G31560 Arabidopsis lyrata HOM05D004345 ORTHO05D005192 8.6e-102 375.9 926 31.2
Ah.03g148550 Amaranthus hybridus HOM05D004345 ORTHO05D005192 3.3e-101 374.0 937 30.9
Thhalv10020051m.g Eutrema salsugineum HOM05D004345 ORTHO05D005192 3.4e-98 364.0 871 32.3
BraA05t21971Z Brassica rapa HOM05D004345 ORTHO05D005192 2.9e-97 360.9 884 31.9
BolC5t33472H Brassica oleracea HOM05D004345 ORTHO05D005192 5.4e-96 356.7 866 32.2
Carub.0003s1810 Capsella rubella HOM05D004345 ORTHO05D005192 5.4e-96 356.7 890 30.8
CARHR093680 Cardamine hirsuta HOM05D004345 ORTHO05D005192 5.4e-96 356.7 890 30.1
A05p31330 Brassica napus HOM05D004345 ORTHO05D005192 9.2e-96 355.9 882 31.7
Thhalv10003730m.g Eutrema salsugineum HOM05D004345 ORTHO05D005192 2.1e-95 354.8 739 32.2
AT3G18310 Arabidopsis thaliana HOM05D004345 ORTHO05D005192 4.6e-95 353.6 888 30.7
C05p47630 Brassica napus HOM05D004345 ORTHO05D005192 6.6e-94 349.7 863 32.3
PSO210G0907 Papaver somniferum HOM05D004345 ORTHO05D005192 2.0e-90 338.2 935 30.1
Thecc.05G018000 Theobroma cacao HOM05D004345 ORTHO05D005192 8.7e-86 322.8 645 35.0
MBI07_g11743_MAGBIO Magnolia biondii HOM05D004345 ORTHO05D005192 2.6e-82 311.2 744 33.2
TAR383G0351 Trochodendron aralioides HOM05D004345 ORTHO05D005192 6.4e-81 306.6 409 44.5
ATR0691G134 Amborella trichopoda HOM05D004345 ORTHO05D005192 6.0e-79 300.1 967 30.0
Os03g0240400 Oryza sativa ssp. japonica HOM05D004345 ORTHO05D005192 2.5e-77 294.7 942 29.9
C05p47510 Brassica napus HOM05D004345 ORTHO05D005192 4.8e-76 290.4 640 32.7
Zm00001eb399070 Zea mays HOM05D004345 ORTHO05D005192 2.1e-71 275.0 940 28.4
Aqoxy7G01729 Aquilegia oxysepala HOM05D004345 ORTHO05D005192 2.3e-70 271.6 472 38.6
HPP92_000827 Vanilla planifolia HOM05D004345 ORTHO05D005192 3.9e-70 270.8 962 28.6
CDE12G0342 Ceratophyllum demersum HOM05D004345 ORTHO05D005192 2.1e-68 265.0 658 31.6
QL07p001298 Quercus lobata HOM05D004345 ORTHO05D005192 7.6e-66 256.5 826 30.3
Cpa.g.sc4881.1 Carica papaya HOM05D004345 ORTHO05D005192 4.2e-64 250.8 579 32.3
CDE09G0455 Ceratophyllum demersum HOM05D004345 ORTHO05D005192 1.1e-61 242.7 636 29.9
Os09g0104700 Oryza sativa ssp. japonica HOM05D004345 ORTHO05D005192 3.8e-57 227.6 956 25.6
PGSC0003DMG403028564 Solanum tuberosum HOM05D004345 ORTHO05D005192 6.1e-55 220.3 144 73.6
PSO384G0273 Papaver somniferum HOM05D004345 ORTHO05D005192 7.9e-55 219.9 507 31.6
Cpa.g.sc3060.1 Carica papaya HOM05D004345 ORTHO05D005192 3.4e-50 204.5 927 25.6
ATR0446G001 Amborella trichopoda HOM05D004345 ORTHO05D005192 8.5e-49 199.9 791 26.5
PSO210G0382 Papaver somniferum HOM05D004345 ORTHO05D005192 1.9e-48 198.7 518 30.3
PSO384G0711 Papaver somniferum HOM05D004345 ORTHO05D005192 3.2e-48 198.0 552 30.6
COL.COLO4_14552 Corchorus olitorius HOM05D004345 ORTHO05D005192 7.9e-47 193.4 420 33.6
RcHm_v2.0_Chr6g0264721 Rosa chinensis HOM05D004345 ORTHO05D005192 4.8e-44 184.1 206 47.1
ATR1192G001 Amborella trichopoda HOM05D004345 ORTHO05D005192 9.1e-43 179.9 400 33.5
ATR0022G053 Amborella trichopoda HOM05D004345 ORTHO05D005192 1.5e-42 179.1 252 39.7
QL07p000983 Quercus lobata HOM05D004345 ORTHO05D005192 8.5e-41 173.3 177 50.3
SEGI_03816 Sequoiadendron giganteum HOM05D004345 ORTHO05D005192 5.7e-37 160.6 428 31.3
BcaB01g01503 Brassica carinata HOM05D004345 ORTHO05D005192 4.1e-35 154.5 338 32.8
Peaxi162Scf00165g00216 Petunia axillaris HOM05D004345 ORTHO05D005192 4.5e-34 151.0 182 49.5
CAN.G1428.6 Capsicum annuum HOM05D004345 ORTHO05D005192 8.8e-30 136.7 93 73.1
BcaC05g28685 Brassica carinata HOM05D004345 ORTHO05D005192 2.0e-29 135.6 285 33.0
Gorai.007G313800 Gossypium raimondii HOM05D004345 ORTHO05D005192 2.2e-28 132.1 159 44.0
A05p31320 Brassica napus HOM05D004345 ORTHO05D005192 2.8e-28 131.7 307 30.0
BraA05t21970Z Brassica rapa HOM05D004345 ORTHO05D005192 2.8e-28 131.7 307 30.0
Gohir.D11G289900 Gossypium hirsutum HOM05D004345 ORTHO05D005192 6.3e-28 130.6 159 43.4
BcaB06g25876 Brassica carinata HOM05D004345 ORTHO05D005192 1.4e-27 129.4 218 34.9
MBI07_g44810_MAGBIO Magnolia biondii HOM05D004345 ORTHO05D005192 2.5e-24 118.6 454 27.3
ATR0661G336 Amborella trichopoda HOM05D004345 ORTHO05D005192 3.6e-23 114.8 522 27.6
SMO297G0008 Selaginella moellendorffii HOM05D004345 ORTHO05D005192 6.1e-23 114.0 389 25.4
BolC5t33532H Brassica oleracea HOM05D004345 ORTHO05D005192 8.0e-23 113.6 249 32.5
MBI07_g37626_MAGBIO Magnolia biondii HOM05D004345 ORTHO05D005192 2.3e-22 112.1 453 27.2
SMO203G0127 Selaginella moellendorffii HOM05D004345 ORTHO05D005192 2.3e-22 112.1 262 30.5
PSO407G0063 Papaver somniferum HOM05D004345 ORTHO05D005192 4.4e-21 107.8 326 27.0
ATR0560G006 Amborella trichopoda HOM05D004345 ORTHO05D005192 4.1e-19 101.3 210 36.2
Psat5g200920 Pisum sativum HOM05D000856 ORTHO05D005192 1.2e-18 99.8 93 51.6
Mapoly0100s0030 Marchantia polymorpha HOM05D004345 ORTHO05D005192 1.7e-17 95.9 773 22.9
Oeu011014.1 Olea europaea HOM05D004345 ORTHO05D005192 2.9e-17 95.1 143 42.0
THA.LOC104807021 Tarenaya hassleriana HOM05D004345 ORTHO05D005192 6.5e-17 94.0 290 30.7
Pp3c14_24820 Physcomitrium patens HOM05D004345 ORTHO05D005192 8.5e-17 93.6 615 23.1
Oeu028553.1 Olea europaea HOM05D004345 ORTHO05D005192 3.2e-16 91.7 142 40.8
AagrBONN_evm.TU.Sc2ySwM_344.4665 Anthoceros agrestis HOM05D004345 ORTHO05D005192 5.2e-14 84.3 280 26.1
ATR0964G004 Amborella trichopoda HOM05D004345 ORTHO05D005192 6.3e-12 77.4 370 26.5
Sc22g0003820 Simmondsia chinensis HOM05D004345 ORTHO05D005192 1.7e-09 69.3 163 36.8
ATR0792G001 Amborella trichopoda HOM05D004345 ORTHO05D005192 8.6e-09 67.0 379 24.0
SEGI_28583 Sequoiadendron giganteum HOM05D004345 ORTHO05D005192 6.1e-07 60.8 406 25.4


User provided reference genes

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