Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0008294g0020 Nicotiana tabacum HOM05D006824 ORTHO05D008779 2.1e-123 445.7 219 100.0
Nitab4.5_0005183g0030 Nicotiana tabacum HOM05D006824 ORTHO05D008779 8.1e-75 284.3 256 60.2
CAN.G694.18 Capsicum annuum HOM05D006824 ORTHO05D008779 1.7e-64 250.0 262 54.6
PGSC0003DMG400023472 Solanum tuberosum HOM05D006824 ORTHO05D008779 4.9e-64 248.4 263 53.6
Nitab4.5_0009285g0020 Nicotiana tabacum HOM05D006824 ORTHO05D008779 1.8e-58 229.9 198 64.6
Sopen05g034220 Solanum pennellii HOM05D006824 ORTHO05D008779 1.5e-57 226.9 233 55.4
Cc09_g03430 Coffea canephora HOM05D006824 ORTHO05D008779 8.2e-51 204.5 258 45.7
Dinv04348 Davidia involucrata HOM05D006824 ORTHO05D008779 8.2e-51 204.5 265 47.9
Lj8A196G47 Lonicera japonica HOM05D006824 ORTHO05D008779 1.4e-50 203.8 223 48.9
Oeu010150.1 Olea europaea HOM05D006824 ORTHO05D008779 1.5e-49 200.3 257 48.6
GSVIVG01019144001 Vitis vinifera HOM05D006824 ORTHO05D008779 2.6e-49 199.5 209 51.7
Lsat_1_v5_gn_9_48761 Lactuca sativa HOM05D006824 ORTHO05D008779 2.9e-48 196.1 242 47.1
TPR.G28449 Trifolium pratense HOM05D006824 ORTHO05D008779 3.8e-48 195.7 237 47.3
RcHm_v2.0_Chr3g0448181 Rosa chinensis HOM05D006824 ORTHO05D008779 1.1e-47 194.1 207 51.7
Actinidia38928 Actinidia chinensis HOM05D006824 ORTHO05D008779 3.2e-47 192.6 243 45.7
Ca_07965_v3 Cicer arietinum L. HOM05D006824 ORTHO05D008779 3.2e-47 192.6 237 45.1
Lalb_Chr19g0126751 Lupinus albus HOM05D006824 ORTHO05D008779 7.2e-47 191.4 206 47.6
Medtr7g079530 Medicago truncatula HOM05D006824 ORTHO05D008779 7.2e-47 191.4 233 46.4
Glyma.18G240500 Glycine max HOM05D006824 ORTHO05D008779 9.4e-47 191.0 251 43.4
Haze_04530 Corylus avellana HOM05D006824 ORTHO05D008779 2.1e-46 189.9 238 46.2
Thecc.05G206500 Theobroma cacao HOM05D006824 ORTHO05D008779 2.1e-46 189.9 219 47.9
CSS0012922 Camellia sinensis var. sinensis HOM05D006824 ORTHO05D008779 1.8e-45 186.8 212 46.7
CSS0029100 Camellia sinensis var. sinensis HOM05D006824 ORTHO05D008779 1.8e-45 186.8 212 46.7
Glyma.09G252100 Glycine max HOM05D006824 ORTHO05D008779 1.8e-45 186.8 248 43.1
Phvul.008G055700 Phaseolus vulgaris HOM05D006824 ORTHO05D008779 3.9e-45 185.7 217 45.6
Potri.010G143000 Populus trichocarpa HOM05D006824 ORTHO05D008779 3.9e-45 185.7 200 49.5
Prupe.6G359400 Prunus persica HOM05D006824 ORTHO05D008779 6.7e-45 184.9 200 49.5
AUR62000332 Chenopodium quinoa HOM05D006824 ORTHO05D008779 1.5e-44 183.7 259 45.2
VMungo1383G3541 Vigna mungo HOM05D006824 ORTHO05D008779 2.0e-44 183.3 217 45.6
CiPaw.08G117600 Carya illinoinensis HOM05D006824 ORTHO05D008779 4.4e-44 182.2 214 45.8
Atru.chr12.2132 Acer truncatum HOM05D006824 ORTHO05D008779 5.7e-44 181.8 211 46.0
PGR031G0982 Punica granatum HOM05D006824 ORTHO05D008779 5.7e-44 181.8 222 44.6
Gohir.A02G138800 Gossypium hirsutum HOM05D006824 ORTHO05D008779 7.4e-44 181.4 239 44.4
Gorai.003G050700 Gossypium raimondii HOM05D006824 ORTHO05D008779 7.4e-44 181.4 239 44.8
Manes.14G158930 Manihot esculenta HOM05D006824 ORTHO05D008779 9.7e-44 181.0 229 44.1
TWI14G0776 Tripterygium wilfordii HOM05D006824 ORTHO05D008779 9.7e-44 181.0 234 45.3
SGA_v2.0_scaffold13G06472 Striga asiatica HOM05D006824 ORTHO05D008779 1.3e-43 180.6 238 44.5
EL10Ac4g09985 Beta vulgaris HOM05D006824 ORTHO05D008779 1.7e-43 180.3 247 43.3
TAR362G0347 Trochodendron aralioides HOM05D006824 ORTHO05D008779 2.2e-43 179.9 239 43.9
COL.COLO4_19831 Corchorus olitorius HOM05D006824 ORTHO05D008779 3.7e-43 179.1 247 43.3
ECA232G2571 Erigeron canadensis HOM05D006824 ORTHO05D008779 3.7e-43 179.1 231 44.2
Psat3g104840 Pisum sativum HOM05D006824 ORTHO05D008779 3.7e-43 179.1 231 45.0
HanXRQChr11g0323941 Helianthus annuus HOM05D006824 ORTHO05D008779 4.8e-43 178.7 202 50.0
Duzib128G1599 Durio zibethinus HOM05D006824 ORTHO05D008779 6.3e-43 178.3 236 43.6
Sabra10G0110900 Salix brachista HOM05D006824 ORTHO05D008779 6.3e-43 178.3 196 48.5
Aa31LG4G40 Aethionema arabicum HOM05D006824 ORTHO05D008779 1.4e-42 177.2 213 46.0
CANSAT54G2581 Cannabis sativa HOM05D006824 ORTHO05D008779 1.4e-42 177.2 199 47.7
MD12G1258900 Malus domestica HOM05D006824 ORTHO05D008779 1.4e-42 177.2 210 44.8
vmacro06000 Vaccinium macrocarpon HOM05D006824 ORTHO05D008779 1.4e-42 177.2 204 46.6
Eucgr.H01379 Eucalyptus grandis HOM05D006824 ORTHO05D008779 1.8e-42 176.8 243 44.0
FAN05G0802 Fragaria x ananassa HOM05D006824 ORTHO05D008779 1.8e-42 176.8 193 51.3
Rhsim03G0265800 Rhododendron simsii HOM05D006824 ORTHO05D008779 1.8e-42 176.8 266 41.7
THA.LOC104813550 Tarenaya hassleriana HOM05D006824 ORTHO05D008779 2.4e-42 176.4 219 44.3
AUR62006674 Chenopodium quinoa HOM05D006824 ORTHO05D008779 4.1e-42 175.6 244 43.4
Sp5g35980 Schrenkiella parvula HOM05D006824 ORTHO05D008779 4.1e-42 175.6 231 45.5
A07p26320 Brassica napus HOM05D006824 ORTHO05D008779 1.2e-41 174.1 198 48.0
BraA07t30276Z Brassica rapa HOM05D006824 ORTHO05D008779 2.0e-41 173.3 198 47.5
Migut.F01795 Erythranthe guttata HOM05D006824 ORTHO05D008779 3.4e-41 172.6 205 48.3
C06p28710 Brassica napus HOM05D006824 ORTHO05D008779 4.5e-41 172.2 198 48.0
AL2G41760 Arabidopsis lyrata HOM05D006824 ORTHO05D008779 1.3e-40 170.6 210 46.7
arahy.Tifrunner.gnm1.ann1.3Y20MY Arachis hypogaea HOM05D006824 ORTHO05D008779 1.3e-40 170.6 220 44.1
arahy.Tifrunner.gnm1.ann1.8HY0WZ Arachis hypogaea HOM05D006824 ORTHO05D008779 1.3e-40 170.6 220 44.1
ClCG11G010940 Citrullus lanatus HOM05D006824 ORTHO05D008779 1.3e-40 170.6 200 46.0
DCAR_005505 Daucus carota HOM05D006824 ORTHO05D008779 2.2e-40 169.9 235 42.1
CDE09G0666 Ceratophyllum demersum HOM05D006824 ORTHO05D008779 2.9e-40 169.5 215 46.0
Sed0011929 Sechium edule HOM05D006824 ORTHO05D008779 3.8e-40 169.1 205 45.4
Aqoxy5G00154 Aquilegia oxysepala HOM05D006824 ORTHO05D008779 5.0e-40 168.7 215 46.5
PSO170G6807 Papaver somniferum HOM05D006824 ORTHO05D008779 5.0e-40 168.7 220 43.6
Ah.06g195550 Amaranthus hybridus HOM05D006824 ORTHO05D008779 6.5e-40 168.3 229 46.3
BolC6t38040H Brassica oleracea HOM05D006824 ORTHO05D008779 3.2e-39 166.0 221 43.0
CsaV3_2G009540 Cucumis sativus L. HOM05D006824 ORTHO05D008779 5.5e-39 165.2 243 39.9
Thhalv10019052m.g Eutrema salsugineum HOM05D006824 ORTHO05D008779 5.5e-39 165.2 212 43.4
FAN02G3690 Fragaria x ananassa HOM05D006824 ORTHO05D008779 7.2e-39 164.9 202 46.0
CARHR049030 Cardamine hirsuta HOM05D006824 ORTHO05D008779 2.1e-38 163.3 213 44.1
Carub.0002s2772 Capsella rubella HOM05D006824 ORTHO05D008779 1.4e-37 160.6 209 44.5
CDE02G0053 Ceratophyllum demersum HOM05D006824 ORTHO05D008779 3.0e-37 159.5 230 42.2
SalBow3G1586 Salvia bowleyana HOM05D006824 ORTHO05D008779 1.5e-36 157.1 234 42.3
FAN14G1847 Fragaria x ananassa HOM05D006824 ORTHO05D008779 1.7e-35 153.7 192 46.4
HPP92_009935 Vanilla planifolia HOM05D006824 ORTHO05D008779 3.7e-35 152.5 128 58.6
MBI08_g02107_MAGBIO Magnolia biondii HOM05D006824 ORTHO05D008779 6.3e-35 151.8 170 45.9
AT1G79790 Arabidopsis thaliana HOM05D006824 ORTHO05D008779 1.4e-34 150.6 263 37.3
Nn1g09799 Nelumbo nucifera HOM05D006824 ORTHO05D008779 2.4e-34 149.8 165 50.3
Ciclev10012732m.g Citrus clementina HOM05D006824 ORTHO05D008779 5.3e-34 148.7 173 46.8
Gohir.D03G049300 Gossypium hirsutum HOM05D006824 ORTHO05D008779 5.3e-34 148.7 180 48.3
FvH4_6g00710 Fragaria vesca HOM05D006824 ORTHO05D008779 7.0e-34 148.3 126 61.1
Zm00001eb169290 Zea mays HOM05D006824 ORTHO05D008779 9.1e-34 147.9 136 55.9
Hma1.2p1_0171F.1_g075760 Hydrangea macrophylla HOM05D006824 ORTHO05D008779 2.0e-33 146.7 126 57.9
Lj1g0017863 Lotus japonicus HOM05D006824 ORTHO05D008779 1.9e-31 140.2 149 48.3
CBR_g54655 Chara braunii HOM05D006824 ORTHO05D008779 4.2e-31 139.0 194 39.2
Cpa.g.sc123.9 Carica papaya HOM05D006824 ORTHO05D008779 7.2e-31 138.3 158 48.1
MD04G1242100 Malus domestica HOM05D006824 ORTHO05D008779 9.4e-31 137.9 112 58.9
SMO361G0474 Selaginella moellendorffii HOM05D006824 ORTHO05D008779 1.6e-30 137.1 203 39.9
AagrBONN_evm.TU.Sc2ySwM_344.3559 Anthoceros agrestis HOM05D006824 ORTHO05D008779 3.0e-29 132.9 194 39.2
Mapoly0002s0020 Marchantia polymorpha HOM05D006824 ORTHO05D008779 8.8e-29 131.3 194 36.1
MELO3C008753.2 Cucumis melo HOM05D006824 ORTHO05D008779 1.2e-28 131.0 167 44.9
MELO3C025302.2 Cucumis melo HOM05D006824 ORTHO05D008779 1.2e-28 131.0 169 43.8
Pp3c3_9990 Physcomitrium patens HOM05D006824 ORTHO05D008779 1.3e-27 127.5 192 38.0
SalBow3G1143 Salvia bowleyana HOM05D006824 ORTHO05D008779 1.4e-26 124.0 163 45.4
FAN09G4644 Fragaria x ananassa HOM05D006824 ORTHO05D008779 4.1e-26 122.5 76 73.7
Hund07329 Selenicereus undatus HOM05D006824 ORTHO05D008779 4.7e-22 109.0 198 35.9
Cre13.g563200 Chlamydomonas reinhardtii HOM05D006824 ORTHO05D008779 4.8e-19 99.0 202 31.2
QL01p046721 Quercus lobata HOM05D006824 ORTHO05D008779 1.7e-16 90.5 121 42.1
arahy.Tifrunner.gnm1.ann1.EIZA4A Arachis hypogaea HOM05D006824 ORTHO05D008779 5.5e-15 85.5 101 47.5
arahy.Tifrunner.gnm1.ann1.X7EDXL Arachis hypogaea HOM05D006824 ORTHO05D021501 4.7e-14 82.4 54 70.4
arahy.Tifrunner.gnm1.ann1.JEI8NT Arachis hypogaea HOM05D006824 ORTHO05D008779 1.1e-10 71.2 109 40.4
Solyc05g055820.3 Solanum lycopersicum HOM05D006824 ORTHO05D008779 1.4e-10 70.9 45 73.3
arahy.Tifrunner.gnm1.ann1.96LZZJ Arachis hypogaea HOM05D006824 ORTHO05D021501 1.6e-09 67.4 101 39.6
arahy.Tifrunner.gnm1.ann1.2JVF5K Arachis hypogaea HOM05D001175 ORTHO05D021501 2.7e-09 66.6 131 35.1
arahy.Tifrunner.gnm1.ann1.DM3ST4 Arachis hypogaea HOM05D006824 ORTHO05D021501 3.5e-09 66.2 96 40.6
arahy.Tifrunner.gnm1.ann1.LN2II4 Arachis hypogaea HOM05D006661 ORTHO05D021501 1.0e-08 64.7 128 35.2
PRCOL_00006210 Prasinoderma coloniale HOM05D006824 ORTHO05D008779 1.1e-07 61.2 145 29.0
arahy.Tifrunner.gnm1.ann1.0X0W56 Arachis hypogaea HOM05D006824 ORTHO05D021501 1.5e-07 60.8 40 65.0
Psat3g104160 Pisum sativum HOM05D006824 ORTHO05D008779 4.3e-07 59.3 38 71.1
SEGI_14412 Sequoiadendron giganteum HOM05D006824 ORTHO05D008779 9.5e-07 58.2 54 55.6
MD04G1242000 Malus domestica HOM05D006824 ORTHO05D008779 6.1e-06 55.5 67 41.8


User provided reference genes

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