Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0008290g0030 Nicotiana tabacum HOM05D004579 ORTHO05D005376 2.4e-131 472.2 254 100.0
Nitab4.5_0006174g0020 Nicotiana tabacum HOM05D004579 ORTHO05D005376 6.0e-122 441.0 256 94.1
Nitab4.5_0000359g0090 Nicotiana tabacum HOM05D004579 ORTHO05D005376 7.9e-122 440.7 255 94.1
PGSC0003DMG400005151 Solanum tuberosum HOM05D004579 ORTHO05D005376 2.7e-98 362.5 257 79.4
Solyc04g080350.4 Solanum lycopersicum HOM05D004579 ORTHO05D005376 6.1e-98 361.3 257 78.2
Peaxi162Scf00436g00719 Petunia axillaris HOM05D004579 ORTHO05D005376 2.0e-96 356.3 249 80.7
Sopen04g033940 Solanum pennellii HOM05D004579 ORTHO05D005376 4.3e-96 355.1 257 77.0
CAN.G1226.13 Capsicum annuum HOM05D004579 ORTHO05D005376 7.7e-93 344.4 257 73.9
Dinv23423 Davidia involucrata HOM05D004579 ORTHO05D005376 6.8e-65 251.5 250 60.0
CSS0030937 Camellia sinensis var. sinensis HOM05D004579 ORTHO05D005376 9.8e-64 247.7 255 58.4
Hma1.2p1_1266F.1_g271430 Hydrangea macrophylla HOM05D004579 ORTHO05D005376 1.7e-60 236.9 251 57.0
DCAR_019057 Daucus carota HOM05D004579 ORTHO05D005376 2.3e-60 236.5 253 58.1
MSTRG.11672 Avicennia marina HOM05D004579 ORTHO05D005376 8.6e-60 234.6 251 56.6
Migut.A00154 Erythranthe guttata HOM05D004579 ORTHO05D005376 9.5e-59 231.1 252 59.9
GSVIVG01035344001 Vitis vinifera HOM05D004579 ORTHO05D005376 2.1e-58 229.9 206 61.2
Duzib168G1792 Durio zibethinus HOM05D004579 ORTHO05D005376 2.8e-58 229.6 242 53.3
Rhsim07G0143600 Rhododendron simsii HOM05D004579 ORTHO05D005376 8.9e-57 224.6 263 53.2
Thecc.09G051200 Theobroma cacao HOM05D004579 ORTHO05D005376 2.6e-56 223.0 242 55.4
Cc08_g10350 Coffea canephora HOM05D004579 ORTHO05D005376 3.4e-56 222.6 252 53.2
Glyma.06G050800 Glycine max HOM05D004579 ORTHO05D005376 4.4e-56 222.2 242 55.0
Actinidia14703 Actinidia chinensis HOM05D004579 ORTHO05D005376 5.7e-56 221.9 180 63.9
Glyma.04G049800 Glycine max HOM05D004579 ORTHO05D005376 1.7e-55 220.3 242 55.0
HanXRQChr08g0226451 Helianthus annuus HOM05D004579 ORTHO05D005376 3.7e-55 219.2 239 56.5
HanXRQChr08g0226601 Helianthus annuus HOM05D004579 ORTHO05D005376 3.7e-55 219.2 239 56.5
SGA_v2.0_scaffold88G27218 Striga asiatica HOM05D004579 ORTHO05D005376 3.7e-55 219.2 252 56.0
Dinv27966 Davidia involucrata HOM05D004579 ORTHO05D005376 6.4e-55 218.4 245 53.9
Manes.03G046600 Manihot esculenta HOM05D004579 ORTHO05D005376 1.1e-54 217.6 250 52.0
CiPaw.15G041800 Carya illinoinensis HOM05D004579 ORTHO05D005376 3.2e-54 216.1 251 53.0
Oeu037326.2 Olea europaea HOM05D004579 ORTHO05D005376 4.1e-54 215.7 275 52.7
Duzib187G0056 Durio zibethinus HOM05D004579 ORTHO05D005376 2.0e-53 213.4 242 53.3
MELO3C022510.2 Cucumis melo HOM05D004579 ORTHO05D005376 2.7e-53 213.0 245 50.6
Phvul.009G076200 Phaseolus vulgaris HOM05D004579 ORTHO05D005376 2.7e-53 213.0 248 53.2
Cfa017933 Carpinus fangiana HOM05D004579 ORTHO05D005376 5.9e-53 211.8 254 52.4
SalBow4G3199 Salvia bowleyana HOM05D004579 ORTHO05D005376 1.0e-52 211.1 258 53.9
unitig_736.g22340 Utricularia gibba HOM05D004579 ORTHO05D005376 1.3e-52 210.7 244 53.7
Atru.chr7.2020 Acer truncatum HOM05D004579 ORTHO05D005376 1.7e-52 210.3 244 51.2
Gohir.D05G045500 Gossypium hirsutum HOM05D004579 ORTHO05D005376 2.3e-52 209.9 255 52.9
Gorai.009G046700 Gossypium raimondii HOM05D004579 ORTHO05D005376 2.3e-52 209.9 252 51.2
Ca_15870_v3 Cicer arietinum L. HOM05D004579 ORTHO05D005376 5.0e-52 208.8 245 49.8
ClCG06G000280 Citrullus lanatus HOM05D004579 ORTHO05D005376 6.6e-52 208.4 242 50.4
QL02p103256 Quercus lobata HOM05D004579 ORTHO05D005376 6.6e-52 208.4 253 50.2
Psat5g036520 Pisum sativum HOM05D004579 ORTHO05D005376 1.1e-51 207.6 247 52.6
Prupe.1G414900 Prunus persica HOM05D004579 ORTHO05D005376 2.5e-51 206.5 250 50.8
QL07p000612 Quercus lobata HOM05D004579 ORTHO05D005376 3.3e-51 206.1 255 50.2
CANSAT25G0619 Cannabis sativa HOM05D004579 ORTHO05D005376 4.3e-51 205.7 257 50.6
HanXRQChr09g0251171 Helianthus annuus HOM05D004579 ORTHO05D005376 4.3e-51 205.7 219 55.3
arahy.Tifrunner.gnm1.ann1.C5JVH4 Arachis hypogaea HOM05D004579 ORTHO05D005376 5.6e-51 205.3 258 46.9
arahy.Tifrunner.gnm1.ann1.XC2JTE Arachis hypogaea HOM05D004579 ORTHO05D005376 7.3e-51 204.9 265 48.7
Lsat_1_v5_gn_6_7421 Lactuca sativa HOM05D004579 ORTHO05D005376 7.3e-51 204.9 250 51.2
Gohir.A05G043900 Gossypium hirsutum HOM05D004579 ORTHO05D005376 9.5e-51 204.5 275 48.0
Lalb_Chr24g0399591 Lupinus albus HOM05D004579 ORTHO05D005376 9.5e-51 204.5 247 49.4
TPR.G13109 Trifolium pratense HOM05D004579 ORTHO05D005376 9.5e-51 204.5 248 51.2
TWI34G1837 Tripterygium wilfordii HOM05D004579 ORTHO05D005376 9.5e-51 204.5 245 51.4
Gohir.D07G022900 Gossypium hirsutum HOM05D004579 ORTHO05D005376 1.2e-50 204.1 243 50.6
Lj1g0026801 Lotus japonicus HOM05D004579 ORTHO05D005376 1.6e-50 203.8 267 49.1
Oeu018654.1 Olea europaea HOM05D004579 ORTHO05D005376 1.6e-50 203.8 167 70.7
TAR383G0831 Trochodendron aralioides HOM05D004579 ORTHO05D005376 1.6e-50 203.8 245 48.6
Gorai.001G023600 Gossypium raimondii HOM05D004579 ORTHO05D005376 4.7e-50 202.2 243 50.2
Sc09g0009680 Simmondsia chinensis HOM05D004579 ORTHO05D005376 4.7e-50 202.2 253 52.2
Lalb_Chr22g0355991 Lupinus albus HOM05D004579 ORTHO05D005376 8.0e-50 201.4 248 50.8
Ciclev10009210m.g Citrus clementina HOM05D004579 ORTHO05D005376 1.0e-49 201.1 255 52.2
Glyma.14G092900 Glycine max HOM05D004579 ORTHO05D005376 3.1e-49 199.5 255 48.6
VMungo0647G1140 Vigna mungo HOM05D004579 ORTHO05D005376 6.8e-49 198.4 252 50.4
arahy.Tifrunner.gnm1.ann1.Y2NPND Arachis hypogaea HOM05D004579 ORTHO05D005376 2.0e-48 196.8 264 47.3
Medtr1g016630 Medicago truncatula HOM05D004579 ORTHO05D005376 2.0e-48 196.8 238 50.4
Hund03357 Selenicereus undatus HOM05D004579 ORTHO05D005376 2.0e-48 196.8 289 48.8
Manes.16G077900 Manihot esculenta HOM05D004579 ORTHO05D005376 3.4e-48 196.1 253 50.6
TWI63G0708 Tripterygium wilfordii HOM05D004579 ORTHO05D005376 4.4e-48 195.7 246 51.2
arahy.Tifrunner.gnm1.ann1.A3GFYF Arachis hypogaea HOM05D004579 ORTHO05D005376 7.5e-48 194.9 264 47.0
Potri.006G232800 Populus trichocarpa HOM05D004579 ORTHO05D005376 7.5e-48 194.9 257 51.0
CsaV3_6G006070 Cucumis sativus L. HOM05D004579 ORTHO05D005376 8.3e-47 191.4 244 48.4
Sabra06G0181300 Salix brachista HOM05D004579 ORTHO05D005376 8.3e-47 191.4 262 49.6
VMungo1309G2710 Vigna mungo HOM05D004579 ORTHO05D005376 8.3e-47 191.4 244 51.6
Ah.11g044630 Amaranthus hybridus HOM05D004579 ORTHO05D005376 1.1e-46 191.0 244 54.9
Haze_18215 Corylus avellana HOM05D004579 ORTHO05D005376 1.9e-46 190.3 319 42.9
FAN24G0041 Fragaria x ananassa HOM05D004579 ORTHO05D005376 9.2e-46 188.0 256 50.8
Ca_02416_v3 Cicer arietinum L. HOM05D004579 ORTHO05D005376 1.2e-45 187.6 249 49.8
Eucgr.C00634 Eucalyptus grandis HOM05D004579 ORTHO05D005376 1.2e-45 187.6 259 48.6
Gohir.A07G022140 Gossypium hirsutum HOM05D004579 ORTHO05D005376 2.0e-45 186.8 212 52.8
EL10Ac2g03929 Beta vulgaris HOM05D004579 ORTHO05D005376 2.7e-45 186.4 245 49.8
Sed0027918 Sechium edule HOM05D004579 ORTHO05D005376 2.7e-45 186.4 190 53.7
HPP92_014384 Vanilla planifolia HOM05D004579 ORTHO05D005376 2.7e-45 186.4 162 56.2
FAN15G2153 Fragaria x ananassa HOM05D004579 ORTHO05D005376 4.6e-45 185.7 254 49.6
Psat6g019640 Pisum sativum HOM05D004579 ORTHO05D005376 1.0e-44 184.5 240 43.8
COL.COLO4_21028 Corchorus olitorius HOM05D004579 ORTHO05D005376 1.7e-44 183.7 242 44.6
Nn8g38954 Nelumbo nucifera HOM05D004579 ORTHO05D005376 1.7e-44 183.7 246 45.1
FAN20G3218 Fragaria x ananassa HOM05D004579 ORTHO05D005376 5.0e-44 182.2 254 49.2
PGR031G0410 Punica granatum HOM05D004579 ORTHO05D005376 5.0e-44 182.2 248 48.4
Lj5g0003794 Lotus japonicus HOM05D004579 ORTHO05D005376 8.6e-44 181.4 251 47.8
FAN27G3258 Fragaria x ananassa HOM05D004579 ORTHO05D005376 1.9e-43 180.3 252 49.6
FvH4_2g32180 Fragaria vesca HOM05D004579 ORTHO05D005376 3.3e-43 179.5 256 49.6
Sed0005208 Sechium edule HOM05D004579 ORTHO05D005376 3.3e-43 179.5 246 44.3
TAR626G1184 Trochodendron aralioides HOM05D004579 ORTHO05D005376 3.3e-43 179.5 188 58.5
MBI01_g16584_MAGBIO Magnolia biondii HOM05D004579 ORTHO05D005376 7.3e-43 178.3 242 43.8
THA.LOC104811250 Tarenaya hassleriana HOM05D004579 ORTHO05D005376 1.2e-42 177.6 174 51.1
CARHR096140 Cardamine hirsuta HOM05D004579 ORTHO05D005376 1.6e-42 177.2 256 47.3
ECA233G0431 Erigeron canadensis HOM05D004579 ORTHO05D005376 1.6e-42 177.2 263 47.5
vmacro05280 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 3.6e-42 176.0 368 38.0
Aa31LG8G7240 Aethionema arabicum HOM05D004579 ORTHO05D005376 4.7e-42 175.6 264 44.3
Zm00001eb356770 Zea mays HOM05D004579 ORTHO05D005376 4.7e-42 175.6 240 44.6
AT3G20430 Arabidopsis thaliana HOM05D004579 ORTHO05D005376 8.1e-42 174.9 250 46.4
BraA05t21726Z Brassica rapa HOM05D004579 ORTHO05D005376 8.1e-42 174.9 251 45.4
AUR62022041 Chenopodium quinoa HOM05D004579 ORTHO05D005376 8.1e-42 174.9 158 55.1
Os01g0559200 Oryza sativa ssp. japonica HOM05D004579 ORTHO05D005376 1.1e-41 174.5 171 53.2
Carub.0003s2037 Capsella rubella HOM05D004579 ORTHO05D005376 1.8e-41 173.7 248 45.2
BcaB06g26108 Brassica carinata HOM05D004579 ORTHO05D005376 2.3e-41 173.3 259 46.3
AL3G34150 Arabidopsis lyrata HOM05D004579 ORTHO05D005376 3.1e-41 172.9 247 44.5
CDE02G1740 Ceratophyllum demersum HOM05D004579 ORTHO05D005376 4.0e-41 172.6 249 44.6
BcaC05g28330 Brassica carinata HOM05D004579 ORTHO05D005376 8.9e-41 171.4 258 45.0
BolC5t33107H Brassica oleracea HOM05D004579 ORTHO05D005376 8.9e-41 171.4 258 45.0
Thhalv10021403m.g Eutrema salsugineum HOM05D004579 ORTHO05D005376 8.9e-41 171.4 247 45.3
C05p43910 Brassica napus HOM05D004579 ORTHO05D005376 2.0e-40 170.2 257 45.1
Nn6g35393 Nelumbo nucifera HOM05D004579 ORTHO05D005376 3.4e-40 169.5 244 47.1
A05p28470 Brassica napus HOM05D004579 ORTHO05D005376 5.8e-40 168.7 253 45.5
CSS0042880 Camellia sinensis var. sinensis HOM05D004579 ORTHO05D005376 1.3e-39 167.5 143 62.2
PSO210G6518 Papaver somniferum HOM05D004579 ORTHO05D005376 2.2e-39 166.8 268 44.8
PSO210G6474 Papaver somniferum HOM05D004579 ORTHO05D005376 2.9e-39 166.4 198 54.0
Sp3g18440 Schrenkiella parvula HOM05D004579 ORTHO05D005376 1.1e-38 164.5 252 45.2
Aqoxy7G00927 Aquilegia oxysepala HOM05D004579 ORTHO05D005376 1.4e-38 164.1 248 46.0
MSTRG.25939 Avicennia marina HOM05D004579 ORTHO05D005376 1.2e-37 161.0 145 59.3
PSO017G1019 Papaver somniferum HOM05D004579 ORTHO05D005376 1.6e-37 160.6 165 53.9
ATR0789G072 Amborella trichopoda HOM05D004579 ORTHO05D005376 2.1e-37 160.2 262 43.1
PGR142G1482 Punica granatum HOM05D004579 ORTHO05D005376 2.7e-37 159.8 243 44.9
FAN24G1203 Fragaria x ananassa HOM05D004579 ORTHO05D005376 4.6e-37 159.1 255 43.5
Hund19474 Selenicereus undatus HOM05D004579 ORTHO05D005376 3.3e-35 152.9 364 37.1
PSO063G4337 Papaver somniferum HOM05D004579 ORTHO05D005376 6.6e-28 128.6 225 37.8
PGSC0003DMG400032806 Solanum tuberosum HOM05D004579 ORTHO05D005376 1.6e-26 124.0 68 89.7
SEGI_10906 Sequoiadendron giganteum HOM05D004579 ORTHO05D005376 1.4e-25 120.9 174 41.4
TPR.G25353 Trifolium pratense HOM05D004579 ORTHO05D005376 5.2e-25 119.0 126 51.6
AUR62009186 Chenopodium quinoa HOM05D004579 ORTHO05D005376 2.6e-24 116.7 123 48.0
RcHm_v2.0_Chr6g0310501 Rosa chinensis HOM05D004579 ORTHO05D005376 1.9e-22 110.5 133 48.1
vmacro00165 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 1.9e-22 110.5 246 38.6
Cpa.g.sc84.21 Carica papaya HOM05D004579 ORTHO05D005376 5.4e-22 109.0 245 38.4
Actinidia18195 Actinidia chinensis HOM05D004579 ORTHO05D005376 7.8e-21 105.1 122 60.7
Phvul.001G033700 Phaseolus vulgaris HOM05D004579 ORTHO05D005376 3.0e-20 103.2 140 45.0
PGSC0003DMG400032808 Solanum tuberosum HOM05D004579 ORTHO05D005376 4.3e-19 99.4 90 63.3
arahy.Tifrunner.gnm1.ann1.E1I8FT Arachis hypogaea HOM05D004579 ORTHO05D005376 4.8e-18 95.9 155 42.6
CBR_g36456 Chara braunii HOM05D004579 ORTHO05D005376 8.1e-18 95.1 157 36.3
Mapoly0091s0021 Marchantia polymorpha HOM05D004579 ORTHO05D005376 1.1e-17 94.7 197 39.6
AagrBONN_evm.TU.Sc2ySwM_117.2939 Anthoceros agrestis HOM05D004579 ORTHO05D005376 2.4e-17 93.6 209 32.5
Hma1.2p1_1944F.1_g308530 Hydrangea macrophylla HOM05D004579 ORTHO05D005376 6.9e-17 92.0 131 42.0
Pp3c10_2240 Physcomitrium patens HOM05D004579 ORTHO05D005376 3.8e-15 86.3 180 41.7
RcHm_v2.0_Chr6g0310491 Rosa chinensis HOM05D004579 ORTHO05D005376 1.1e-14 84.7 125 49.6
TPR.G25355 Trifolium pratense HOM05D004579 ORTHO05D005376 2.1e-10 70.5 111 46.8
PSO017G0877 Papaver somniferum HOM05D004579 ORTHO05D005376 1.1e-09 68.2 43 65.1
PSO017G5975 Papaver somniferum HOM05D004579 ORTHO05D005376 1.1e-09 68.2 43 65.1
vmacro00163 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 1.4e-09 67.8 144 36.1
QL03p011522 Quercus lobata HOM05D004579 ORTHO05D005376 4.5e-08 62.8 54 57.4


User provided reference genes

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