Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0008211g0030 Nicotiana tabacum HOM05D005174 ORTHO05D006784 1.9e-201 705.7 374 100.0
PGSC0003DMG400017574 Solanum tuberosum HOM05D005174 ORTHO05D006784 1.4e-146 523.5 333 81.7
Solyc06g060420.3 Solanum lycopersicum HOM05D005174 ORTHO05D006784 4.1e-143 511.9 333 80.5
Sopen06g020560 Solanum pennellii HOM05D005174 ORTHO05D006784 1.2e-142 510.4 333 80.2
Nitab4.5_0000633g0140 Nicotiana tabacum HOM05D005174 ORTHO05D006784 1.0e-133 480.7 335 81.8
Peaxi162Scf00051g00623 Petunia axillaris HOM05D005174 ORTHO05D006784 1.7e-125 453.4 333 74.2
CAN.G1396.5 Capsicum annuum HOM05D005174 ORTHO05D006784 6.4e-120 434.9 269 82.9
Dinv40398 Davidia involucrata HOM05D005174 ORTHO05D006784 2.0e-118 429.9 333 66.7
CSS0047682 Camellia sinensis var. sinensis HOM05D005174 ORTHO05D006784 9.5e-116 421.0 333 64.9
CSS0048949 Camellia sinensis var. sinensis HOM05D005174 ORTHO05D006784 8.0e-115 417.9 333 64.3
Migut.C01145 Erythranthe guttata HOM05D005174 ORTHO05D006784 1.2e-110 404.1 333 64.9
SGA_v2.0_scaffold52G18977 Striga asiatica HOM05D005174 ORTHO05D006784 1.6e-110 403.7 333 64.6
Eucgr.H00450 Eucalyptus grandis HOM05D005174 ORTHO05D006784 1.7e-109 400.2 337 64.1
Duzib116G0013 Durio zibethinus HOM05D005174 ORTHO05D006784 3.0e-109 399.4 337 62.3
COL.COLO4_12205 Corchorus olitorius HOM05D005174 ORTHO05D006784 1.5e-108 397.1 335 62.1
Cc01_g07610 Coffea canephora HOM05D005174 ORTHO05D006784 1.2e-107 394.0 333 63.1
Gorai.005G090400 Gossypium raimondii HOM05D005174 ORTHO05D006784 1.2e-107 394.0 335 63.0
Thecc.08G122000 Theobroma cacao HOM05D005174 ORTHO05D006784 1.2e-107 394.0 335 62.7
TAR381G1686 Trochodendron aralioides HOM05D005174 ORTHO05D006784 1.2e-107 394.0 335 63.0
MSTRG.1457 Avicennia marina HOM05D005174 ORTHO05D006784 2.1e-107 393.3 333 62.8
Oeu047941.1 Olea europaea HOM05D005174 ORTHO05D006784 2.1e-107 393.3 341 62.8
Glyma.06G111200 Glycine max HOM05D005174 ORTHO05D006784 6.2e-107 391.7 333 63.7
Lalb_Chr08g0241531 Lupinus albus HOM05D005174 ORTHO05D006784 2.3e-106 389.8 328 63.1
Prupe.1G501000 Prunus persica HOM05D005174 ORTHO05D006784 2.3e-106 389.8 335 63.0
GSVIVG01008896001 Vitis vinifera HOM05D005174 ORTHO05D006784 3.1e-106 389.4 334 63.2
TWI56G0960 Tripterygium wilfordii HOM05D005174 ORTHO05D006784 6.8e-106 388.3 328 62.2
Gorai.009G244400 Gossypium raimondii HOM05D005174 ORTHO05D006784 1.5e-105 387.1 335 62.4
SalBow7G2597 Salvia bowleyana HOM05D005174 ORTHO05D006784 2.0e-105 386.7 359 59.1
Manes.02G161600 Manihot esculenta HOM05D005174 ORTHO05D006784 2.6e-105 386.3 332 62.3
Potri.005G175900 Populus trichocarpa HOM05D005174 ORTHO05D006784 2.6e-105 386.3 333 61.3
VMungo1309G0682 Vigna mungo HOM05D005174 ORTHO05D006784 4.4e-105 385.6 334 62.6
ECA232G2439 Erigeron canadensis HOM05D005174 ORTHO05D006784 7.5e-105 384.8 335 60.6
Gohir.A05G233700 Gossypium hirsutum HOM05D005174 ORTHO05D006784 1.7e-104 383.6 335 62.1
Gohir.D05G236100 Gossypium hirsutum HOM05D005174 ORTHO05D006784 3.7e-104 382.5 335 61.8
Ca_13578_v3 Cicer arietinum L. HOM05D005174 ORTHO05D006784 6.4e-104 381.7 336 62.8
Nn5g28198 Nelumbo nucifera HOM05D005174 ORTHO05D006784 6.4e-104 381.7 326 61.3
Psat5g120840 Pisum sativum HOM05D005174 ORTHO05D006784 1.1e-103 380.9 336 62.5
arahy.Tifrunner.gnm1.ann1.3YB7R6 Arachis hypogaea HOM05D005174 ORTHO05D006784 1.4e-103 380.6 341 61.6
Duzib093G0119 Durio zibethinus HOM05D005174 ORTHO05D006784 1.4e-103 380.6 335 60.6
PGR044G1014 Punica granatum HOM05D005174 ORTHO05D006784 1.4e-103 380.6 335 59.7
HanXRQChr02g0041151 Helianthus annuus HOM05D005174 ORTHO05D006784 2.4e-103 379.8 333 61.3
Cpa.g.sc36.39 Carica papaya HOM05D005174 ORTHO05D006784 5.4e-103 378.6 320 61.9
Lj1g0014313 Lotus japonicus HOM05D005174 ORTHO05D006784 9.2e-103 377.9 336 63.1
CANSAT25G0921 Cannabis sativa HOM05D005174 ORTHO05D006784 1.2e-102 377.5 337 61.1
Phvul.009G123200 Phaseolus vulgaris HOM05D005174 ORTHO05D006784 2.1e-102 376.7 337 61.1
Hund24749 Selenicereus undatus HOM05D005174 ORTHO05D006784 2.1e-102 376.7 327 59.9
Gohir.D02G080900 Gossypium hirsutum HOM05D005174 ORTHO05D006784 4.6e-102 375.6 335 61.2
QL09p035644 Quercus lobata HOM05D005174 ORTHO05D006784 4.6e-102 375.6 325 62.2
Lj5g0013947 Lotus japonicus HOM05D005174 ORTHO05D006784 6.0e-102 375.2 336 62.2
Glyma.14G147200 Glycine max HOM05D005174 ORTHO05D006784 3.0e-101 372.9 335 59.4
MD15G1352500 Malus domestica HOM05D005174 ORTHO05D006784 3.0e-101 372.9 333 60.1
Lsat_1_v5_gn_4_135460 Lactuca sativa HOM05D005174 ORTHO05D006784 8.6e-101 371.3 358 56.7
Cfa015995 Carpinus fangiana HOM05D005174 ORTHO05D006784 9.5e-100 367.9 325 61.2
vmacro00818 Vaccinium macrocarpon HOM05D005174 ORTHO05D006784 3.6e-99 365.9 292 67.8
Lalb_Chr17g0343851 Lupinus albus HOM05D005174 ORTHO05D006784 4.7e-99 365.5 337 58.5
Medtr3g072620 Medicago truncatula HOM05D005174 ORTHO05D006784 6.2e-99 365.2 330 61.2
TPR.G22992 Trifolium pratense HOM05D005174 ORTHO05D006784 6.2e-99 365.2 337 59.9
Sc01g0001320 Simmondsia chinensis HOM05D005174 ORTHO05D006784 8.1e-99 364.8 327 59.6
PSO782G4297 Papaver somniferum HOM05D005174 ORTHO05D006784 1.1e-98 364.4 336 59.2
Aqoxy6G00176 Aquilegia oxysepala HOM05D005174 ORTHO05D006784 1.8e-98 363.6 328 60.4
Psat2g085920 Pisum sativum HOM05D005174 ORTHO05D006784 3.1e-98 362.8 369 55.6
Sed0012589 Sechium edule HOM05D005174 ORTHO05D006784 3.1e-98 362.8 330 57.9
CsaV3_4G028370 Cucumis sativus L. HOM05D005174 ORTHO05D006784 2.0e-97 360.1 339 56.3
ClCG11G015640 Citrullus lanatus HOM05D005174 ORTHO05D006784 3.4e-97 359.4 330 57.0
THA.LOC104806814 Tarenaya hassleriana HOM05D005174 ORTHO05D006784 5.8e-97 358.6 333 58.3
Eucgr.L02995 Eucalyptus grandis HOM05D005174 ORTHO05D006784 1.7e-96 357.1 335 59.1
FvH4_2g26610 Fragaria vesca HOM05D005174 ORTHO05D006784 1.7e-96 357.1 333 58.3
FAN24G0526 Fragaria x ananassa HOM05D005174 ORTHO05D006784 1.7e-96 357.1 333 58.3
CiPaw.05G223800 Carya illinoinensis HOM05D005174 ORTHO05D006784 2.9e-96 356.3 325 58.2
RcHm_v2.0_Chr6g0295461 Rosa chinensis HOM05D005174 ORTHO05D006784 6.4e-96 355.1 333 58.0
PSO170G4538 Papaver somniferum HOM05D005174 ORTHO05D006784 8.4e-96 354.8 333 58.0
arahy.Tifrunner.gnm1.ann1.Z8FB5F Arachis hypogaea HOM05D005174 ORTHO05D006784 1.4e-95 354.0 396 53.0
Ciclev10001813m.g Citrus clementina HOM05D005174 ORTHO05D006784 4.2e-95 352.4 333 55.9
Sp1g33700 Schrenkiella parvula HOM05D005174 ORTHO05D006784 9.2e-95 351.3 333 57.4
AUR62042433 Chenopodium quinoa HOM05D005174 ORTHO05D006784 3.5e-94 349.4 332 55.4
Actinidia29457 Actinidia chinensis HOM05D005174 ORTHO05D006784 1.7e-93 347.1 334 58.7
ATR0193G024 Amborella trichopoda HOM05D005174 ORTHO05D006784 2.3e-93 346.7 327 56.6
Sabra05G0132500 Salix brachista HOM05D005174 ORTHO05D006784 3.9e-93 345.9 390 51.8
AL1G52500 Arabidopsis lyrata HOM05D005174 ORTHO05D006784 1.1e-92 344.4 333 56.8
BraA08t32633Z Brassica rapa HOM05D005174 ORTHO05D006784 1.5e-92 344.0 341 55.4
BcaB04g17581 Brassica carinata HOM05D005174 ORTHO05D006784 2.5e-92 343.2 334 56.6
Aa31LG6G9210 Aethionema arabicum HOM05D005174 ORTHO05D006784 4.3e-92 342.4 327 56.3
BcaC07g37283 Brassica carinata HOM05D005174 ORTHO05D006784 5.6e-92 342.0 341 54.8
C08p07120 Brassica napus HOM05D005174 ORTHO05D006784 5.6e-92 342.0 341 54.8
BolC8t47557H Brassica oleracea HOM05D005174 ORTHO05D006784 5.6e-92 342.0 341 54.8
A08p06300 Brassica napus HOM05D005174 ORTHO05D006784 7.3e-92 341.7 341 55.1
BcaC08g42881 Brassica carinata HOM05D005174 ORTHO05D006784 6.2e-91 338.6 341 54.5
AUR62018164 Chenopodium quinoa HOM05D005174 ORTHO05D006784 6.2e-91 338.6 350 53.4
Thhalv10021201m.g Eutrema salsugineum HOM05D005174 ORTHO05D006784 1.4e-90 337.4 333 55.3
RhsimUnG0094500 Rhododendron simsii HOM05D005174 ORTHO05D006784 1.8e-90 337.0 343 56.3
BolC6t35233H Brassica oleracea HOM05D005174 ORTHO05D006784 2.4e-90 336.7 343 55.1
C06p00970 Brassica napus HOM05D005174 ORTHO05D006784 3.1e-90 336.3 371 51.2
Thhalv10004660m.g Eutrema salsugineum HOM05D005174 ORTHO05D006784 5.3e-90 335.5 333 55.0
AT1G44835 Arabidopsis thaliana HOM05D005174 ORTHO05D006784 9.0e-90 334.7 333 54.7
Carub.0001s3538 Capsella rubella HOM05D005174 ORTHO05D006784 9.9e-89 331.3 334 55.4
A10p07300 Brassica napus HOM05D005174 ORTHO05D006784 2.9e-88 329.7 341 54.8
BraSC36t46091Z Brassica rapa HOM05D005174 ORTHO05D006784 2.9e-88 329.7 341 54.8
FAN20G1758 Fragaria x ananassa HOM05D005174 ORTHO05D006784 1.1e-87 327.8 333 55.0
CARHR036100 Cardamine hirsuta HOM05D005174 ORTHO05D006784 1.4e-87 327.4 333 53.8
CDE05G2191 Ceratophyllum demersum HOM05D005174 ORTHO05D006784 1.9e-87 327.0 328 52.1
Sc01g0001280 Simmondsia chinensis HOM05D005174 ORTHO05D006784 4.2e-87 325.9 281 61.9
Atru.chr13.1416 Acer truncatum HOM05D005174 ORTHO05D006784 9.3e-87 324.7 287 59.2
Os02g0767700 Oryza sativa ssp. japonica HOM05D005174 ORTHO05D006784 9.3e-87 324.7 327 56.6
EL10Ac2g03105 Beta vulgaris HOM05D005174 ORTHO05D006784 4.6e-86 322.4 321 55.1
Zm00001eb193560 Zea mays HOM05D005174 ORTHO05D006784 1.6e-83 313.9 334 53.0
MBI03_g33021_MAGBIO Magnolia biondii HOM05D005174 ORTHO05D006784 4.6e-78 295.8 291 55.3
DCAR_017401 Daucus carota HOM05D005174 ORTHO05D006784 1.3e-77 294.3 206 72.8
FAN27G1282 Fragaria x ananassa HOM05D005174 ORTHO05D006784 1.2e-73 281.2 306 53.3
unitig_82.g26987 Utricularia gibba HOM05D005174 ORTHO05D006784 2.9e-72 276.6 321 50.8
FAN15G0922 Fragaria x ananassa HOM05D005174 ORTHO05D006784 4.9e-72 275.8 372 47.8
MELO3C032634.2 Cucumis melo HOM05D005174 ORTHO05D006784 3.2e-71 273.1 317 50.2
SEGI_02373 Sequoiadendron giganteum HOM05D005174 ORTHO05D006784 9.0e-66 255.0 287 51.9
Gohir.A02G073700 Gossypium hirsutum HOM05D005174 ORTHO05D006784 2.1e-62 243.8 335 45.1
Ah.10g032020 Amaranthus hybridus HOM05D005174 ORTHO05D006784 3.5e-62 243.0 334 44.6
Pp3c18_22250 Physcomitrium patens HOM05D005174 ORTHO05D006784 3.9e-61 239.6 328 43.9
Mapoly0010s0001 Marchantia polymorpha HOM05D005174 ORTHO05D006784 3.7e-59 233.0 328 44.5
HPP92_001042 Vanilla planifolia HOM05D005174 ORTHO05D006784 3.0e-53 213.4 334 39.8
Lj7A337T25 Lonicera japonica HOM05D005174 ORTHO05D006784 1.5e-44 184.5 191 53.9
Haze_00470 Corylus avellana HOM05D005174 ORTHO05D006784 2.6e-44 183.7 110 86.4
Cre10.g425950 Chlamydomonas reinhardtii HOM05D005174 ORTHO05D006784 7.4e-44 182.2 178 50.6
PRCOL_00005180 Prasinoderma coloniale HOM05D005174 ORTHO05D006784 1.7e-40 171.0 175 49.7
MD08G1166300 Malus domestica HOM05D005174 ORTHO05D006784 3.9e-37 159.8 110 73.6
Hund16845 Selenicereus undatus HOM05D005174 ORTHO05D006784 2.2e-35 154.1 105 73.3
FAN20G0512 Fragaria x ananassa HOM05D005174 ORTHO05D006784 2.4e-34 150.6 281 39.1
Sabra15G0076900 Salix brachista HOM05D000453 ORTHO05D000387 5.9e-33 146.0 136 59.6
SMO200G0142 Selaginella moellendorffii HOM05D000188 ORTHO05D007139 6.8e-29 132.5 246 38.6
Haze_00471 Corylus avellana HOM05D005174 ORTHO05D006784 8.8e-29 132.1 182 41.8
Ca_03754_v3 Cicer arietinum L. HOM05D005174 ORTHO05D006784 1.7e-24 117.9 100 60.0
Sabra02G0067100 Salix brachista HOM05D005174 ORTHO05D006784 2.4e-18 97.4 337 29.4
Cfa010764 Carpinus fangiana HOM05D005174 ORTHO05D006784 2.8e-14 84.0 96 50.0
Ca_03755_v3 Cicer arietinum L. HOM05D005174 ORTHO05D006784 6.1e-14 82.8 103 44.7
Glyma.04G251502 Glycine max HOM05D005174 ORTHO05D006784 2.3e-13 80.9 100 44.0
arahy.Tifrunner.gnm1.ann1.032V6W Arachis hypogaea HOM05D005174 ORTHO05D015215 4.0e-13 80.1 46 84.8
arahy.Tifrunner.gnm1.ann1.PAU1NR Arachis hypogaea HOM05D005174 ORTHO05D015215 4.0e-13 80.1 46 84.8
arahy.Tifrunner.gnm1.ann1.RE5YQ2 Arachis hypogaea HOM05D005174 ORTHO05D015215 4.0e-13 80.1 46 84.8
Duzib041G0272 Durio zibethinus HOM05D005174 ORTHO05D015215 1.2e-12 78.6 70 58.6
arahy.Tifrunner.gnm1.ann1.S56SQA Arachis hypogaea HOM05D005174 ORTHO05D015215 4.4e-12 76.6 67 58.2
arahy.Tifrunner.gnm1.ann1.W2W6PZ Arachis hypogaea HOM05D005174 ORTHO05D015215 5.7e-12 76.3 45 82.2
Potri.002G085700 Populus trichocarpa HOM05D005174 ORTHO05D050453 3.7e-11 73.6 59 61.0
SEGI_30371 Sequoiadendron giganteum HOM05D005174 ORTHO05D050453 6.3e-11 72.8 53 67.9
CiPaw.05G223900 Carya illinoinensis HOM05D005174 ORTHO05D006784 3.3e-07 60.5 92 37.0
arahy.Tifrunner.gnm1.ann1.9F26EH Arachis hypogaea HOM05D005174 ORTHO05D015215 7.3e-07 59.3 51 62.7
SGA_v2.0_scaffold24G10473 Striga asiatica HOM05D021410 ORTHO05D401290 1.2e-06 58.5 36 77.8


User provided reference genes

Program Settings