Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0008207g0010 Nicotiana tabacum HOM05D005645 ORTHO05D007156 5.5e-172 607.4 288 100.0
Nitab4.5_0001879g0020 Nicotiana tabacum HOM05D005645 ORTHO05D007156 3.7e-160 568.2 288 93.8
Peaxi162Scf00001g00452 Petunia axillaris HOM05D005645 ORTHO05D007156 5.7e-145 517.7 288 86.5
PGSC0003DMG400011401 Solanum tuberosum HOM05D005645 ORTHO05D007156 5.6e-140 501.1 292 84.2
Sopen09g029900 Solanum pennellii HOM05D005645 ORTHO05D007156 5.8e-137 491.1 290 82.8
CAN.G1628.1 Capsicum annuum HOM05D005645 ORTHO05D007156 1.7e-136 489.6 291 79.7
Solyc09g075080.3 Solanum lycopersicum HOM05D005645 ORTHO05D007156 3.5e-134 481.9 290 81.7
Cc01_g20770 Coffea canephora HOM05D005645 ORTHO05D007156 6.6e-125 451.1 291 74.9
CSS0005125 Camellia sinensis var. sinensis HOM05D005645 ORTHO05D007156 1.0e-117 427.2 293 73.4
Dinv19699 Davidia involucrata HOM05D005645 ORTHO05D007156 1.0e-117 427.2 296 70.9
Hma1.2p1_0491F.1_g164480 Hydrangea macrophylla HOM05D005645 ORTHO05D007156 5.8e-113 411.4 304 69.4
CAN.G339.1 Capsicum annuum HOM05D005645 ORTHO05D007156 3.2e-111 405.6 268 73.9
Atru.chr5.1154 Acer truncatum HOM05D005645 ORTHO05D007156 3.5e-110 402.1 292 68.2
Migut.D00211 Erythranthe guttata HOM05D005645 ORTHO05D007156 4.6e-110 401.7 296 66.9
Duzib138G1290 Durio zibethinus HOM05D005645 ORTHO05D007156 7.8e-110 401.0 293 68.3
Manes.05G062500 Manihot esculenta HOM05D005645 ORTHO05D007156 2.3e-109 399.4 293 67.2
TAR365G0052 Trochodendron aralioides HOM05D005645 ORTHO05D007156 8.7e-109 397.5 292 66.8
Ciclev10021114m.g Citrus clementina HOM05D005645 ORTHO05D007156 1.1e-108 397.1 298 65.1
Lj2P1193T28 Lonicera japonica HOM05D005645 ORTHO05D007156 1.1e-108 397.1 297 68.0
Thecc.01G299500 Theobroma cacao HOM05D005645 ORTHO05D007156 1.1e-108 397.1 292 66.8
COL.COLO4_23354 Corchorus olitorius HOM05D005645 ORTHO05D007156 3.3e-108 395.6 292 66.4
Duzib133G0671 Durio zibethinus HOM05D005645 ORTHO05D007156 7.3e-108 394.4 293 66.6
PGR119G1100 Punica granatum HOM05D005645 ORTHO05D007156 7.3e-108 394.4 293 64.8
Duzib211G0390 Durio zibethinus HOM05D005645 ORTHO05D007156 1.3e-107 393.7 293 65.9
Dinv33051 Davidia involucrata HOM05D005645 ORTHO05D007156 2.1e-107 392.9 274 71.2
Rhsim01G0284600 Rhododendron simsii HOM05D005645 ORTHO05D007156 2.8e-107 392.5 303 64.4
Aqoxy2G02954 Aquilegia oxysepala HOM05D005645 ORTHO05D007156 1.4e-106 390.2 295 64.1
SalBow3G0280 Salvia bowleyana HOM05D005645 ORTHO05D007156 1.4e-106 390.2 299 63.9
DCAR_002826 Daucus carota HOM05D005645 ORTHO05D007156 1.8e-106 389.8 308 63.3
Gohir.D08G085100 Gossypium hirsutum HOM05D005645 ORTHO05D007156 4.0e-106 388.7 292 65.4
Gohir.A08G075600 Gossypium hirsutum HOM05D005645 ORTHO05D007156 5.3e-106 388.3 292 65.4
Nn4g25798 Nelumbo nucifera HOM05D005645 ORTHO05D007156 5.3e-106 388.3 293 65.2
SGA_v2.0_scaffold1G00372 Striga asiatica HOM05D005645 ORTHO05D007156 6.9e-106 387.9 293 65.2
HanXRQChr04g0118021 Helianthus annuus HOM05D005645 ORTHO05D007156 1.2e-105 387.1 301 63.1
Cpa.g.c27813 Carica papaya HOM05D005645 ORTHO05D007156 5.8e-105 384.8 288 64.2
Gorai.004G089600 Gossypium raimondii HOM05D005645 ORTHO05D007156 5.8e-105 384.8 292 65.1
SGA_v2.0_scaffold2G01399 Striga asiatica HOM05D005645 ORTHO05D007156 9.9e-105 384.0 299 64.5
MBI19_g25350_MAGBIO Magnolia biondii HOM05D005645 ORTHO05D007156 1.3e-104 383.6 305 62.6
Gorai.008G145600 Gossypium raimondii HOM05D005645 ORTHO05D007156 2.9e-104 382.5 297 63.3
Eucgr.H01116 Eucalyptus grandis HOM05D005645 ORTHO05D007156 3.8e-104 382.1 306 60.5
Sed0014780 Sechium edule HOM05D005645 ORTHO05D007156 4.9e-104 381.7 293 64.8
Lsat_1_v5_gn_5_191140 Lactuca sativa HOM05D005645 ORTHO05D007156 1.4e-103 380.2 303 62.7
CiPaw.07G108000 Carya illinoinensis HOM05D005645 ORTHO05D007156 3.2e-103 379.0 289 63.0
QL12p028562 Quercus lobata HOM05D005645 ORTHO05D007156 4.2e-103 378.6 291 63.6
Lsat_1_v5_gn_8_53521 Lactuca sativa HOM05D005645 ORTHO05D007156 5.4e-103 378.3 298 63.4
Cfa005921 Carpinus fangiana HOM05D005645 ORTHO05D007156 7.1e-103 377.9 300 62.7
RcHm_v2.0_Chr6g0293871 Rosa chinensis HOM05D005645 ORTHO05D007156 9.3e-103 377.5 292 64.4
TWI23G0499 Tripterygium wilfordii HOM05D005645 ORTHO05D007156 9.3e-103 377.5 295 63.4
ClCG10G010870 Citrullus lanatus HOM05D005645 ORTHO05D007156 1.6e-102 376.7 297 64.6
CiPaw.08G095700 Carya illinoinensis HOM05D005645 ORTHO05D007156 4.6e-102 375.2 296 61.1
Gohir.A12G130800 Gossypium hirsutum HOM05D005645 ORTHO05D007156 7.9e-102 374.4 297 62.3
CsaV3_4G000750 Cucumis sativus L. HOM05D005645 ORTHO05D007156 1.3e-101 373.6 298 64.1
Actinidia21051 Actinidia chinensis HOM05D005645 ORTHO05D007156 3.9e-101 372.1 275 69.1
MD03G1287400 Malus domestica HOM05D005645 ORTHO05D007156 5.1e-101 371.7 305 62.6
THA.LOC109115977 Tarenaya hassleriana HOM05D005645 ORTHO05D007156 6.6e-101 371.3 299 63.9
Potri.014G130000 Populus trichocarpa HOM05D005645 ORTHO05D007156 1.9e-100 369.8 305 62.0
Potri.002G205150 Populus trichocarpa HOM05D005645 ORTHO05D007156 2.5e-100 369.4 302 62.3
Sabra14G0096600 Salix brachista HOM05D005645 ORTHO05D007156 5.6e-100 368.2 303 61.7
Sabra02G0154200 Salix brachista HOM05D005645 ORTHO05D007156 4.8e-99 365.2 302 61.9
Sp6g02350 Schrenkiella parvula HOM05D005645 ORTHO05D007156 1.1e-98 364.0 304 61.5
EL10Ac7g17501 Beta vulgaris HOM05D005645 ORTHO05D007156 1.4e-98 363.6 302 61.6
CANSAT25G0541 Cannabis sativa HOM05D005645 ORTHO05D007156 1.8e-98 363.2 292 61.6
Sed0022873 Sechium edule HOM05D005645 ORTHO05D007156 1.5e-97 360.1 292 63.0
TAR370G0004 Trochodendron aralioides HOM05D005645 ORTHO05D007156 2.0e-97 359.8 296 61.8
Prupe.8G260500 Prunus persica HOM05D005645 ORTHO05D007156 3.4e-97 359.0 295 62.0
PSO210G7211 Papaver somniferum HOM05D005645 ORTHO05D007156 1.3e-96 357.1 300 61.3
PSO170G2082 Papaver somniferum HOM05D005645 ORTHO05D007156 1.7e-96 356.7 301 61.5
ECA236G0211 Erigeron canadensis HOM05D005645 ORTHO05D007156 2.2e-96 356.3 308 58.4
AT4G02440 Arabidopsis thaliana HOM05D005645 ORTHO05D007156 2.9e-96 355.9 313 59.1
Carub.0006s3469 Capsella rubella HOM05D005645 ORTHO05D007156 1.9e-95 353.2 292 62.0
CDE11G0431 Ceratophyllum demersum HOM05D005645 ORTHO05D007156 1.9e-95 353.2 290 60.3
Sc09g0004020 Simmondsia chinensis HOM05D005645 ORTHO05D007156 3.2e-95 352.4 293 60.8
AL6G50630 Arabidopsis lyrata HOM05D005645 ORTHO05D007156 7.1e-95 351.3 306 59.8
MD11G1310800 Malus domestica HOM05D005645 ORTHO05D007156 1.2e-94 350.5 310 58.1
BcaB01g02041 Brassica carinata HOM05D005645 ORTHO05D007156 3.0e-93 345.9 323 56.0
Aa31LG5G2090 Aethionema arabicum HOM05D005645 ORTHO05D007156 8.7e-93 344.4 302 59.9
AUR62008638 Chenopodium quinoa HOM05D005645 ORTHO05D007156 8.7e-93 344.4 321 56.7
CSS0029794 Camellia sinensis var. sinensis HOM05D005645 ORTHO05D007156 4.3e-92 342.0 275 67.3
HPP92_025206 Vanilla planifolia HOM05D005645 ORTHO05D007156 9.6e-92 340.9 294 58.5
AUR62033135 Chenopodium quinoa HOM05D005645 ORTHO05D007156 1.3e-91 340.5 320 56.6
Migut.N01502 Erythranthe guttata HOM05D005645 ORTHO05D007156 2.1e-91 339.7 292 61.0
FvH4_2g25611 Fragaria vesca HOM05D005645 ORTHO05D007156 6.9e-90 334.7 289 56.7
CARHR250710 Cardamine hirsuta HOM05D005645 ORTHO05D007156 2.6e-89 332.8 305 59.0
FAN27G1772 Fragaria x ananassa HOM05D005645 ORTHO05D007156 5.8e-89 331.6 289 56.4
BraA09t35841Z Brassica rapa HOM05D005645 ORTHO05D007156 1.3e-88 330.5 355 51.3
C09p01980 Brassica napus HOM05D005645 ORTHO05D007156 1.7e-88 330.1 347 51.6
BcaNung04054 Brassica carinata HOM05D005645 ORTHO05D007156 4.9e-88 328.6 363 49.3
FAN24G3399 Fragaria x ananassa HOM05D003469 ORTHO05D004084 6.5e-88 328.2 285 56.1
arahy.Tifrunner.gnm1.ann1.LF73V2 Arachis hypogaea HOM05D005645 ORTHO05D007156 5.5e-87 325.1 293 58.7
BolC9t53130H Brassica oleracea HOM05D005645 ORTHO05D007156 5.5e-87 325.1 363 49.6
A09p01900 Brassica napus HOM05D005645 ORTHO05D007156 1.8e-85 320.1 372 47.8
Lj1g0011611 Lotus japonicus HOM05D005645 ORTHO05D007156 3.0e-85 319.3 295 55.6
Oeu011455.1 Olea europaea HOM05D005645 ORTHO05D007156 5.7e-84 315.1 288 54.9
ATR0796G303 Amborella trichopoda HOM05D005645 ORTHO05D007156 2.4e-82 309.7 392 44.6
VMungo1383G2661 Vigna mungo HOM05D005645 ORTHO05D007156 3.1e-82 309.3 291 57.4
DCAR_018339 Daucus carota HOM05D005645 ORTHO05D007156 2.2e-80 303.1 288 55.2
Glyma.03G214300 Glycine max HOM05D005645 ORTHO05D007156 3.8e-80 302.4 293 53.2
BcaNung05002 Brassica carinata HOM05D005645 ORTHO05D007156 5.0e-80 302.0 263 58.9
Phvul.001G207000 Phaseolus vulgaris HOM05D005645 ORTHO05D007156 5.0e-80 302.0 291 55.0
Actinidia24827 Actinidia chinensis HOM05D005645 ORTHO05D007156 8.5e-80 301.2 236 66.9
FAN15G1997 Fragaria x ananassa HOM05D005645 ORTHO05D007156 2.5e-79 299.7 274 54.7
Lalb_Chr18g0047021 Lupinus albus HOM05D005645 ORTHO05D007156 1.0e-77 294.3 292 51.7
GSVIVG01028000001 Vitis vinifera HOM05D005645 ORTHO05D007156 3.0e-77 292.7 288 51.4
Psat3g022200 Pisum sativum HOM05D005645 ORTHO05D007156 1.1e-76 290.8 291 53.3
Ca_09155_v3 Cicer arietinum L. HOM05D005645 ORTHO05D007156 6.9e-74 281.6 295 50.5
Medtr7g108820 Medicago truncatula HOM05D005645 ORTHO05D007156 5.9e-73 278.5 295 51.2
Medtr8g058520 Medicago truncatula HOM05D005645 ORTHO05D007156 5.9e-73 278.5 295 51.2
TPR.G9640 Trifolium pratense HOM05D005645 ORTHO05D007156 1.3e-72 277.3 291 50.5
Nn3g21470 Nelumbo nucifera HOM05D005645 ORTHO05D007156 2.2e-72 276.6 262 55.7
SHI29059 Sapria himalayana HOM05D005645 ORTHO05D007156 8.5e-72 274.6 277 50.5
MELO3C017961.2 Cucumis melo HOM05D005645 ORTHO05D007156 2.7e-70 269.6 140 85.0
Os05g0365000 Oryza sativa ssp. japonica HOM05D005645 ORTHO05D007156 1.0e-69 267.7 262 51.9
Zm00001eb346660 Zea mays HOM05D005645 ORTHO05D007156 1.8e-69 266.9 291 47.8
Mapoly0034s0045 Marchantia polymorpha HOM05D005645 ORTHO05D007156 3.6e-62 242.7 361 40.7
Pp3c4_3650 Physcomitrium patens HOM05D005645 ORTHO05D007156 3.6e-62 242.7 333 42.9
SEGI_05916 Sequoiadendron giganteum HOM05D005645 ORTHO05D007156 3.9e-61 239.2 461 33.8
Lalb_Chr06g0163461 Lupinus albus HOM05D005645 ORTHO05D007156 5.7e-60 235.3 290 44.8
AagrBONN_evm.TU.Sc2ySwM_228.5415 Anthoceros agrestis HOM05D005645 ORTHO05D007156 4.1e-58 229.2 387 37.5
arahy.Tifrunner.gnm1.ann1.G1675E Arachis hypogaea HOM05D005645 ORTHO05D007156 2.0e-57 226.9 140 70.0
arahy.Tifrunner.gnm1.ann1.UILT17 Arachis hypogaea HOM05D005645 ORTHO05D007156 2.0e-57 226.9 140 70.0
Pp3c12_6520 Physcomitrium patens HOM05D005645 ORTHO05D007156 9.4e-55 218.0 384 36.2
Phvul.007G146000 Phaseolus vulgaris HOM05D005645 ORTHO05D007156 6.1e-54 215.3 288 40.6
SMO331G0040 Selaginella moellendorffii HOM05D005645 ORTHO05D007156 1.4e-53 214.2 292 40.4
VMungo0720G2164 Vigna mungo HOM05D005645 ORTHO05D007156 1.8e-53 213.8 288 40.6
Glyma.02G018450 Glycine max HOM05D005645 ORTHO05D007156 8.8e-53 211.5 288 41.3
HPP92_018255 Vanilla planifolia HOM05D005645 ORTHO05D007156 6.5e-48 195.3 286 38.1
MD05G1102300 Malus domestica HOM05D005645 ORTHO05D007156 5.4e-42 175.6 98 76.5
AagrBONN_evm.TU.Sc2ySwM_117.1647 Anthoceros agrestis HOM05D005645 ORTHO05D007156 4.7e-38 162.5 381 32.3
Haze_04926 Corylus avellana HOM05D005645 ORTHO05D007156 1.5e-36 157.5 189 50.3
Haze_04922 Corylus avellana HOM05D005645 ORTHO05D007156 1.5e-31 141.0 178 48.3
CDE05G1077 Ceratophyllum demersum HOM05D005645 ORTHO05D007156 5.7e-28 129.0 164 47.0
TWI59G0946 Tripterygium wilfordii HOM05D005645 ORTHO05D007156 6.2e-22 109.0 161 41.6
MD05G1102200 Malus domestica HOM05D005645 ORTHO05D007156 3.1e-21 106.7 120 47.5
unitig_0.g662 Utricularia gibba HOM05D005645 ORTHO05D007156 1.1e-18 98.2 169 38.5
Oeu046686.1 Olea europaea HOM05D005645 ORTHO05D007156 3.2e-18 96.7 60 73.3
FAN07G2129 Fragaria x ananassa HOM05D005645 ORTHO05D046604 9.2e-10 68.6 80 47.5
FAN15G0862 Fragaria x ananassa HOM05D005645 ORTHO05D046604 1.2e-09 68.2 52 59.6
SMO356G0542 Selaginella moellendorffii HOM05D002394 ORTHO05D002508 7.3e-07 58.9 121 29.8
Glyma.18G264200 Glycine max HOM05D002394 ORTHO05D002508 1.2e-06 58.2 126 33.3
THA.LOC104822342 Tarenaya hassleriana HOM05D002394 ORTHO05D002508 3.6e-06 56.6 125 33.6
Zm00001eb326680 Zea mays HOM05D002394 ORTHO05D002508 6.2e-06 55.8 124 33.9
Aa31LG11G14140 Aethionema arabicum HOM05D002394 ORTHO05D002508 8.1e-06 55.5 125 32.8


User provided reference genes

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