Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0008206g0010 Nicotiana tabacum HOM05D001925 ORTHO05D004257 6.1e-180 634.0 317 100.0
Nitab4.5_0000386g0060 Nicotiana tabacum HOM05D001925 ORTHO05D004257 1.3e-153 546.6 311 88.1
Sopen10g006250 Solanum pennellii HOM05D001925 ORTHO05D004257 1.1e-128 463.8 311 74.6
Solyc10g012420.3 Solanum lycopersicum HOM05D001925 ORTHO05D004257 1.4e-128 463.4 311 74.6
Peaxi162Scf00008g02423 Petunia axillaris HOM05D001925 ORTHO05D004257 7.3e-125 451.1 312 73.4
CAN.G116.9 Capsicum annuum HOM05D001925 ORTHO05D004257 4.1e-120 435.3 310 70.6
PGSC0003DMG400006504 Solanum tuberosum HOM05D001925 ORTHO05D004257 7.3e-117 424.5 275 77.5
Peaxi162Scf00020g00730 Petunia axillaris HOM05D001925 ORTHO05D004257 6.4e-113 411.4 313 67.4
PGSC0003DMG400000175 Solanum tuberosum HOM05D001925 ORTHO05D004257 1.6e-108 396.7 311 65.3
CAN.G78.91 Capsicum annuum HOM05D001925 ORTHO05D004257 4.3e-101 372.1 311 62.7
Nitab4.5_0006018g0030 Nicotiana tabacum HOM05D001925 ORTHO05D004257 2.0e-98 363.2 312 62.5
Nitab4.5_0000583g0190 Nicotiana tabacum HOM05D001925 ORTHO05D004257 2.6e-98 362.8 312 63.1
Sopen01g038550 Solanum pennellii HOM05D001925 ORTHO05D004257 5.6e-93 345.1 313 58.1
Dinv32493 Davidia involucrata HOM05D001925 ORTHO05D004257 4.0e-91 339.0 318 56.6
CSS0032978 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D004257 1.3e-84 317.4 317 53.9
Thecc.01G357700 Theobroma cacao HOM05D001925 ORTHO05D004257 1.3e-81 307.4 314 52.5
Duzib133G0433 Durio zibethinus HOM05D001925 ORTHO05D004257 2.3e-78 296.6 314 52.2
Migut.M00740 Erythranthe guttata HOM05D001925 ORTHO05D004257 2.3e-78 296.6 317 50.2
TAR629G3070 Trochodendron aralioides HOM05D001925 ORTHO05D004257 3.9e-78 295.8 322 51.2
COL.COLO4_12725 Corchorus olitorius HOM05D001925 ORTHO05D005701 6.7e-78 295.0 317 52.1
vmacro20933 Vaccinium macrocarpon HOM05D001925 ORTHO05D004257 4.3e-77 292.4 315 50.2
Duzib138G1880 Durio zibethinus HOM05D001925 ORTHO05D004257 4.8e-76 288.9 315 50.8
Oeu031215.1 Olea europaea HOM05D001925 ORTHO05D004257 1.4e-75 287.3 318 50.0
MSTRG.14225 Avicennia marina HOM05D001925 ORTHO05D004257 3.1e-75 286.2 316 50.3
Atru.chr5.510 Acer truncatum HOM05D001925 ORTHO05D004257 6.9e-75 285.0 319 49.2
Gohir.A11G089800 Gossypium hirsutum HOM05D001925 ORTHO05D004257 2.6e-74 283.1 315 49.8
TAR375G1105 Trochodendron aralioides HOM05D001925 ORTHO05D004257 2.2e-73 280.0 318 48.7
Cc02_g38170 Coffea canephora HOM05D001925 ORTHO05D004257 2.9e-73 279.6 318 48.1
Gorai.007G100500 Gossypium raimondii HOM05D001925 ORTHO05D004257 4.9e-73 278.9 315 49.5
Hma1.2p1_0780F.1_g216780 Hydrangea macrophylla HOM05D001925 ORTHO05D004257 4.9e-73 278.9 338 47.9
Haze_15511 Corylus avellana HOM05D001925 ORTHO05D005701 1.6e-71 273.9 315 50.5
SalBow8G4919 Salvia bowleyana HOM05D001925 ORTHO05D004257 1.6e-71 273.9 316 47.2
Gohir.D11G094100 Gossypium hirsutum HOM05D001925 ORTHO05D004257 6.0e-71 271.9 315 48.9
CANSAT21G1319 Cannabis sativa HOM05D001925 ORTHO05D004257 7.9e-71 271.6 311 48.2
Prupe.2G172100 Prunus persica HOM05D001925 ORTHO05D004257 3.9e-70 269.2 316 48.7
RcHm_v2.0_Chr1g0355951 Rosa chinensis HOM05D001925 ORTHO05D004257 1.1e-69 267.7 316 47.5
Sabra14G0062300 Salix brachista HOM05D001925 ORTHO05D004257 7.4e-69 265.0 322 48.8
Lj9A584T67 Lonicera japonica HOM05D001925 ORTHO05D004257 9.6e-69 264.6 281 54.1
QL04p053608 Quercus lobata HOM05D001925 ORTHO05D004257 1.3e-68 264.2 283 51.9
TWI23G0808 Tripterygium wilfordii HOM05D001925 ORTHO05D004257 2.8e-68 263.1 315 48.6
Glyma.18G234100 Glycine max HOM05D001925 ORTHO05D004257 3.7e-68 262.7 317 46.7
Actinidia02837 Actinidia chinensis HOM05D001925 ORTHO05D004257 1.1e-67 261.2 325 47.4
Hma1.2p1_0780F.1_g216750 Hydrangea macrophylla HOM05D001925 ORTHO05D004257 1.8e-67 260.4 338 45.0
Nn1g01562 Nelumbo nucifera HOM05D001925 ORTHO05D004257 3.1e-67 259.6 324 46.6
TAR374G1741 Trochodendron aralioides HOM05D001925 ORTHO05D004257 5.3e-67 258.8 317 46.4
Ciclev10021244m.g Citrus clementina HOM05D001925 ORTHO05D004257 7.6e-66 255.0 320 47.5
VMungo1383G2450 Vigna mungo HOM05D001925 ORTHO05D004257 7.6e-66 255.0 315 44.4
Sabra02G0127500 Salix brachista HOM05D001925 ORTHO05D004257 2.2e-65 253.4 316 47.8
Manes.01G255700 Manihot esculenta HOM05D001925 ORTHO05D004257 3.8e-65 252.7 316 46.5
MBI18_g02843_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D004257 5.0e-65 252.3 314 44.3
GSVIVG01026948001 Vitis vinifera HOM05D001925 ORTHO05D004257 5.0e-65 252.3 315 44.8
arahy.Tifrunner.gnm1.ann1.E5DFEG Arachis hypogaea HOM05D001925 ORTHO05D004257 6.5e-65 251.9 315 45.4
Potri.014G086000 Populus trichocarpa HOM05D001925 ORTHO05D004257 6.5e-65 251.9 322 47.2
Glyma.09G258600 Glycine max HOM05D001925 ORTHO05D004257 8.5e-65 251.5 317 45.4
arahy.Tifrunner.gnm1.ann1.IGP217 Arachis hypogaea HOM05D001925 ORTHO05D004257 1.9e-64 250.4 315 45.4
Manes.05G033200 Manihot esculenta HOM05D001925 ORTHO05D004257 4.2e-64 249.2 316 47.2
Lj1g0025308 Lotus japonicus HOM05D001925 ORTHO05D004257 1.2e-63 247.7 317 46.1
PGR031G2850 Punica granatum HOM05D001925 ORTHO05D004257 1.2e-63 247.7 315 46.7
Cfa003907 Carpinus fangiana HOM05D001925 ORTHO05D005701 1.6e-63 247.3 295 49.8
Potri.002G160700 Populus trichocarpa HOM05D001925 ORTHO05D004257 2.7e-63 246.5 319 46.4
Phvul.008G061700 Phaseolus vulgaris HOM05D001925 ORTHO05D004257 3.6e-63 246.1 316 45.3
Eucgr.D02304 Eucalyptus grandis HOM05D001925 ORTHO05D004257 4.6e-63 245.7 319 46.7
CiPaw.02G032000 Carya illinoinensis HOM05D001925 ORTHO05D004257 1.3e-62 244.2 282 48.9
Lalb_Chr23g0275821 Lupinus albus HOM05D001925 ORTHO05D004257 5.1e-62 242.3 316 44.0
ClCG05G001470 Citrullus lanatus HOM05D001925 ORTHO05D004257 1.5e-61 240.7 312 46.2
Nn6g33385 Nelumbo nucifera HOM05D001925 ORTHO05D004257 1.5e-61 240.7 318 43.1
Ca_07929_v3 Cicer arietinum L. HOM05D001925 ORTHO05D004257 2.5e-61 240.0 320 43.8
FAN06G4809 Fragaria x ananassa HOM05D001925 ORTHO05D004257 3.3e-61 239.6 317 44.2
Oeu005388.3 Olea europaea HOM05D001925 ORTHO05D004257 3.3e-61 239.6 308 45.5
DCAR_007445 Daucus carota HOM05D001925 ORTHO05D004257 4.3e-61 239.2 279 49.1
FAN01G0375 Fragaria x ananassa HOM05D001925 ORTHO05D005701 4.3e-61 239.2 316 45.3
Rhsim07G0013800 Rhododendron simsii HOM05D001925 ORTHO05D004257 4.3e-61 239.2 283 48.8
Cpa.g.sc11.19 Carica papaya HOM05D001925 ORTHO05D004257 9.7e-61 238.0 316 45.6
CsaV3_3G008850 Cucumis sativus L. HOM05D001925 ORTHO05D004257 9.7e-61 238.0 304 45.7
FAN06G3089 Fragaria x ananassa HOM05D001925 ORTHO05D004257 9.7e-61 238.0 317 43.8
TPR.G37799 Trifolium pratense HOM05D001925 ORTHO05D004257 1.6e-60 237.3 317 43.2
FvH4_7g14520 Fragaria vesca HOM05D001925 ORTHO05D004257 2.8e-60 236.5 316 43.7
FAN10G1179 Fragaria x ananassa HOM05D001925 ORTHO05D004257 2.8e-60 236.5 317 43.5
FAN10G2559 Fragaria x ananassa HOM05D001925 ORTHO05D004257 4.8e-60 235.7 317 43.5
MELO3C006104.2 Cucumis melo HOM05D001925 ORTHO05D004257 3.1e-59 233.0 302 45.0
Actinidia10041 Actinidia chinensis HOM05D001925 ORTHO05D004257 9.1e-59 231.5 279 47.7
FAN03G0610 Fragaria x ananassa HOM05D001925 ORTHO05D004257 2.0e-58 230.3 323 42.4
TWI59G0730 Tripterygium wilfordii HOM05D001925 ORTHO05D004257 1.7e-57 227.3 283 45.9
Sed0006621 Sechium edule HOM05D001925 ORTHO05D004257 1.4e-56 224.2 311 45.3
DCAR_025195 Daucus carota HOM05D001925 ORTHO05D004257 3.2e-56 223.0 315 41.6
MD01G1065100 Malus domestica HOM05D001925 ORTHO05D004257 2.7e-55 219.9 331 42.3
Medtr7g077860 Medicago truncatula HOM05D001925 ORTHO05D004257 1.8e-54 217.2 321 41.1
Ah.05g180510 Amaranthus hybridus HOM05D001925 ORTHO05D004257 2.3e-54 216.9 315 41.6
Lj6A572T61 Lonicera japonica HOM05D001925 ORTHO05D004257 2.3e-54 216.9 238 45.8
MD07G1135300 Malus domestica HOM05D001925 ORTHO05D004257 5.7e-53 212.2 331 42.3
Rhsim01G0159000 Rhododendron simsii HOM05D001925 ORTHO05D004257 9.7e-53 211.5 279 44.1
THA.LOC104825845 Tarenaya hassleriana HOM05D001925 ORTHO05D004257 2.8e-52 209.9 318 41.2
CiPaw.01G062900 Carya illinoinensis HOM05D001925 ORTHO05D004257 4.8e-52 209.1 319 42.0
unitig_749.g13536 Utricularia gibba HOM05D001925 ORTHO05D004257 6.3e-52 208.8 313 42.5
PSO782G1204 Papaver somniferum HOM05D001925 ORTHO05D004257 9.1e-51 204.9 301 42.9
Hund27265 Selenicereus undatus HOM05D001925 ORTHO05D004257 1.2e-50 204.5 263 45.6
PSO478G2649 Papaver somniferum HOM05D001925 ORTHO05D004257 4.5e-50 202.6 292 42.8
Sp6g00430 Schrenkiella parvula HOM05D001925 ORTHO05D004257 1.0e-49 201.4 306 41.2
Psat3g108000 Pisum sativum HOM05D001925 ORTHO05D004257 1.3e-49 201.1 284 41.9
Oeu061351.3 Olea europaea HOM05D001925 ORTHO05D004257 2.9e-49 199.9 279 41.9
PGR042G2528 Punica granatum HOM05D001925 ORTHO05D004257 3.8e-49 199.5 315 39.7
Sed0020685 Sechium edule HOM05D001925 ORTHO05D004257 3.8e-49 199.5 313 40.6
arahy.Tifrunner.gnm1.ann1.2X3TQS Arachis hypogaea HOM05D001925 ORTHO05D004257 5.0e-49 199.1 313 42.2
Sc26g0000880 Simmondsia chinensis HOM05D001925 ORTHO05D004257 5.0e-49 199.1 303 38.9
Aa31LG5G590 Aethionema arabicum HOM05D001925 ORTHO05D004257 8.5e-49 198.4 317 39.1
Thhalv10029186m.g Eutrema salsugineum HOM05D001925 ORTHO05D004257 8.5e-49 198.4 318 40.9
HanXRQChr13g0426611 Helianthus annuus HOM05D001925 ORTHO05D004257 1.6e-47 194.1 256 41.8
Dinv43827 Davidia involucrata HOM05D001925 ORTHO05D005701 4.7e-47 192.6 308 39.3
AUR62022581 Chenopodium quinoa HOM05D001925 ORTHO05D004257 1.0e-46 191.4 266 42.5
PSO017G3573 Papaver somniferum HOM05D001925 ORTHO05D004257 1.4e-46 191.0 314 41.1
Eucgr.E00120 Eucalyptus grandis HOM05D001925 ORTHO05D004257 5.2e-46 189.1 276 41.3
TAR636G0324 Trochodendron aralioides HOM05D001925 ORTHO05D004257 8.8e-46 188.3 299 42.1
AL6G53090 Arabidopsis lyrata HOM05D001925 ORTHO05D004257 2.6e-45 186.8 312 39.4
ECA236G3632 Erigeron canadensis HOM05D001925 ORTHO05D004257 2.6e-45 186.8 306 36.3
PSO063G1799 Papaver somniferum HOM05D001925 ORTHO05D004257 9.7e-45 184.9 316 40.8
Aqoxy7G00278 Aquilegia oxysepala HOM05D001925 ORTHO05D004257 8.2e-44 181.8 318 37.1
SalBow3G4075 Salvia bowleyana HOM05D001925 ORTHO05D004257 1.4e-43 181.0 309 37.2
THA.LOC104817300 Tarenaya hassleriana HOM05D001925 ORTHO05D004257 1.8e-43 180.6 301 37.9
CARHR248450 Cardamine hirsuta HOM05D001925 ORTHO05D004257 3.1e-43 179.9 313 41.2
AL4G45210 Arabidopsis lyrata HOM05D001925 ORTHO05D004257 1.6e-42 177.6 315 36.5
EL10Ac1g00401 Beta vulgaris HOM05D001925 ORTHO05D004257 2.0e-42 177.2 242 45.5
ATR0680G064 Amborella trichopoda HOM05D001925 ORTHO05D004257 2.6e-42 176.8 313 39.9
Carub.0006s3688 Capsella rubella HOM05D001925 ORTHO05D004257 2.6e-42 176.8 302 40.1
Carub.0004s2868 Capsella rubella HOM05D001925 ORTHO05D004257 3.5e-42 176.4 316 37.7
THA.LOC104817027 Tarenaya hassleriana HOM05D001925 ORTHO05D004257 4.5e-42 176.0 273 40.7
Thhalv10001583m.g Eutrema salsugineum HOM05D001925 ORTHO05D004257 2.9e-41 173.3 318 36.8
Sp4g28050 Schrenkiella parvula HOM05D001925 ORTHO05D004257 1.1e-40 171.4 314 36.9
AT2G45980 Arabidopsis thaliana HOM05D001925 ORTHO05D004257 9.4e-40 168.3 313 36.7
AT4G00355 Arabidopsis thaliana HOM05D001925 ORTHO05D004257 9.4e-40 168.3 317 39.1
AUR62004372 Chenopodium quinoa HOM05D001925 ORTHO05D004257 2.1e-39 167.2 270 40.4
THA.LOC104802035 Tarenaya hassleriana HOM05D001925 ORTHO05D004257 1.0e-38 164.9 302 36.1
BcaB01g02169 Brassica carinata HOM05D001925 ORTHO05D004257 3.0e-38 163.3 312 36.5
Aa31LG1G27390 Aethionema arabicum HOM05D001925 ORTHO05D004257 8.8e-38 161.8 305 35.4
CARHR141250 Cardamine hirsuta HOM05D001925 ORTHO05D004257 1.2e-37 161.4 313 33.5
A05p05970 Brassica napus HOM05D001925 ORTHO05D004257 1.5e-37 161.0 308 33.8
C04p06900 Brassica napus HOM05D001925 ORTHO05D004257 3.3e-37 159.8 306 34.0
BolC4t22311H Brassica oleracea HOM05D001925 ORTHO05D004257 3.3e-37 159.8 306 34.0
BraA05t19560Z Brassica rapa HOM05D001925 ORTHO05D004257 5.7e-37 159.1 305 33.8
Sc23g0002810 Simmondsia chinensis HOM05D001925 ORTHO05D004257 9.7e-37 158.3 278 36.7
SGA_v2.0_scaffold55G19707 Striga asiatica HOM05D001925 ORTHO05D004257 4.1e-35 152.9 280 37.9
Migut.B01767 Erythranthe guttata HOM05D001925 ORTHO05D004257 9.1e-35 151.8 319 33.5
Actinidia20895 Actinidia chinensis HOM05D001925 ORTHO05D005701 1.6e-34 151.0 194 45.9
CDE08G0634 Ceratophyllum demersum HOM05D001925 ORTHO05D004257 1.6e-34 151.0 315 33.0
Lsat_1_v5_gn_7_4301 Lactuca sativa HOM05D001925 ORTHO05D004257 2.0e-34 150.6 320 33.1
MBI17_g42624_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D004257 2.2e-33 147.1 166 45.2
C04p71970 Brassica napus HOM05D001925 ORTHO05D004257 3.2e-32 143.3 302 33.1
BcaC01g06884 Brassica carinata HOM05D001925 ORTHO05D004257 1.2e-31 141.4 315 34.6
HPP92_014720 Vanilla planifolia HOM05D001925 ORTHO05D004257 1.6e-31 141.0 294 32.3
C03p39260 Brassica napus HOM05D001925 ORTHO05D004257 3.6e-31 139.8 316 34.2
Lalb_Chr11g0072911 Lupinus albus HOM05D001925 ORTHO05D004257 8.0e-31 138.7 311 32.5
A04p34180 Brassica napus HOM05D001925 ORTHO05D004257 3.0e-30 136.7 302 31.5
BraA04t18879Z Brassica rapa HOM05D001925 ORTHO05D004257 3.0e-30 136.7 302 31.5
BolC3t16197H Brassica oleracea HOM05D001925 ORTHO05D004257 4.0e-30 136.3 316 33.9
Medtr2g027720 Medicago truncatula HOM05D001925 ORTHO05D004257 5.7e-29 132.5 247 35.2
A03p32220 Brassica napus HOM05D001925 ORTHO05D004257 6.3e-28 129.0 323 32.5
BraA03t12392Z Brassica rapa HOM05D001925 ORTHO05D004257 6.3e-28 129.0 323 32.5
CDE05G2831 Ceratophyllum demersum HOM05D001925 ORTHO05D004257 2.4e-27 127.1 258 32.9
HPP92_025783 Vanilla planifolia HOM05D001925 ORTHO05D004257 3.1e-27 126.7 297 31.0
BolC4t28695H Brassica oleracea HOM05D001925 ORTHO05D004257 1.6e-26 124.4 307 30.9
unitig_8.g3798 Utricularia gibba HOM05D001925 ORTHO05D004257 4.5e-26 122.9 294 31.3
MBI17_g35262_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D004257 2.9e-25 120.2 111 52.3
HanXRQChr04g0121161 Helianthus annuus HOM05D001925 ORTHO05D004257 5.0e-25 119.4 251 31.5
SGA_v2.0_scaffold4G02300 Striga asiatica HOM05D001925 ORTHO05D004257 1.7e-20 104.4 280 30.7
Os02g0821900 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D004257 2.2e-20 104.0 301 28.9
Lj7P510T18 Lonicera japonica HOM05D001925 ORTHO05D004257 3.7e-20 103.2 147 41.5
Lj6P578T28 Lonicera japonica HOM05D001925 ORTHO05D004257 6.3e-20 102.4 144 38.9
Zm00001eb318800 Zea mays HOM05D001925 ORTHO05D004257 1.8e-19 100.9 282 29.4
Zm00001eb103050 Zea mays HOM05D001925 ORTHO05D004257 5.9e-18 95.9 267 30.0
Os04g0165300 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D004257 1.0e-17 95.1 294 29.6
SEGI_07880 Sequoiadendron giganteum HOM05D001925 ORTHO05D004257 3.8e-17 93.2 361 27.1
Zm00001eb191080 Zea mays HOM05D001925 ORTHO05D004257 9.5e-16 88.6 307 26.4
Mapoly0022s0094 Marchantia polymorpha HOM05D001925 ORTHO05D004257 2.6e-13 80.5 161 35.4
Zm00001eb305930 Zea mays HOM05D001925 ORTHO05D004257 1.4e-11 74.7 306 24.5
Zm00001eb087910 Zea mays HOM05D001925 ORTHO05D004257 1.6e-10 71.2 104 36.5
Zm00001eb415260 Zea mays HOM05D001925 ORTHO05D004257 1.6e-10 71.2 104 36.5
SGA_v2.0_scaffold95G28831 Striga asiatica HOM05D001925 ORTHO05D004257 5.9e-10 69.3 275 25.5
SMO112G0035 Selaginella moellendorffii HOM05D001925 ORTHO05D004257 6.6e-09 65.9 87 42.5
C04p06870 Brassica napus HOM05D001925 ORTHO05D004257 8.6e-09 65.5 66 42.4
BolC4t22309H Brassica oleracea HOM05D001925 ORTHO05D004257 8.6e-09 65.5 66 42.4
A05p05940 Brassica napus HOM05D001925 ORTHO05D004257 1.5e-08 64.7 64 42.2
BraA05t19557Z Brassica rapa HOM05D001925 ORTHO05D004257 1.5e-08 64.7 64 42.2
SMO364G0089 Selaginella moellendorffii HOM05D001925 ORTHO05D004257 1.5e-08 64.7 87 42.5
MSTRG.12873 Avicennia marina HOM05D001925 ORTHO05D004257 1.9e-08 64.3 106 34.9
Pp3c15_17300 Physcomitrium patens HOM05D001925 ORTHO05D004257 7.3e-08 62.4 115 32.2
Pp3c9_18340 Physcomitrium patens HOM05D001925 ORTHO05D004257 1.1e-06 58.5 230 24.8
SEGI_37364 Sequoiadendron giganteum HOM05D001925 ORTHO05D004257 1.1e-06 58.5 65 44.6
Os07g0418200 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D004257 3.1e-06 57.0 312 23.4


User provided reference genes

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