Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0008205g0010 Nicotiana tabacum HOM05D005420 ORTHO05D006524 5.1e-151 537.7 276 100.0
Nitab4.5_0000013g0040 Nicotiana tabacum HOM05D005420 ORTHO05D006524 2.0e-142 509.2 276 95.7
Solyc08g015620.3 Solanum lycopersicum HOM05D005420 ORTHO05D006524 1.4e-132 476.5 279 90.3
Sopen08g005610 Solanum pennellii HOM05D005420 ORTHO05D006524 1.4e-132 476.5 279 90.3
Peaxi162Scf01205g00032 Petunia axillaris HOM05D005420 ORTHO05D006524 1.2e-123 446.8 279 87.1
Cc03_g15990 Coffea canephora HOM05D005420 ORTHO05D006524 2.5e-105 386.0 285 74.4
MSTRG.24552 Avicennia marina HOM05D005420 ORTHO05D006524 1.5e-102 376.7 279 75.6
CSS0017727 Camellia sinensis var. sinensis HOM05D005420 ORTHO05D006524 3.4e-102 375.6 300 70.0
CSS0022736 Camellia sinensis var. sinensis HOM05D005420 ORTHO05D006524 2.4e-100 369.4 219 86.3
SalBow3G4646 Salvia bowleyana HOM05D005420 ORTHO05D006524 2.0e-99 366.3 292 69.9
Dinv33245 Davidia involucrata HOM05D005420 ORTHO05D006524 4.6e-99 365.2 212 88.7
ClCG09G014850 Citrullus lanatus HOM05D005420 ORTHO05D006524 8.6e-98 360.9 268 73.9
Ciclev10012405m.g Citrus clementina HOM05D005420 ORTHO05D006524 3.3e-97 359.0 259 74.9
FvH4_1g00160 Fragaria vesca HOM05D005420 ORTHO05D006524 3.3e-97 359.0 284 71.5
FAN28G0609 Fragaria x ananassa HOM05D005420 ORTHO05D006524 3.3e-97 359.0 284 71.5
Cfa008513 Carpinus fangiana HOM05D005420 ORTHO05D006524 1.2e-96 357.1 207 87.4
Prupe.7G269700 Prunus persica HOM05D005420 ORTHO05D006524 1.2e-96 357.1 285 70.9
Atru.chr12.1712 Acer truncatum HOM05D005420 ORTHO05D006524 1.6e-96 356.7 225 82.7
Migut.G00921 Erythranthe guttata HOM05D005420 ORTHO05D006524 1.6e-96 356.7 272 72.8
FAN26G3138 Fragaria x ananassa HOM05D005420 ORTHO05D006524 1.6e-96 356.7 284 70.4
MD00G1087500 Malus domestica HOM05D005420 ORTHO05D006524 2.1e-96 356.3 253 74.7
RcHm_v2.0_Chr2g0084451 Rosa chinensis HOM05D005420 ORTHO05D006524 3.6e-96 355.5 276 72.1
Eucgr.H01455 Eucalyptus grandis HOM05D005420 ORTHO05D006524 4.7e-96 355.1 225 81.8
TAR365G1242 Trochodendron aralioides HOM05D005420 ORTHO05D006524 4.7e-96 355.1 267 71.5
arahy.Tifrunner.gnm1.ann1.D6NWCJ Arachis hypogaea HOM05D005420 ORTHO05D006524 6.2e-96 354.8 219 83.6
arahy.Tifrunner.gnm1.ann1.EMGW5K Arachis hypogaea HOM05D005420 ORTHO05D006524 6.2e-96 354.8 219 83.6
CiPaw.01G201600 Carya illinoinensis HOM05D005420 ORTHO05D006524 1.1e-95 354.0 207 86.5
Actinidia34566 Actinidia chinensis HOM05D005420 ORTHO05D006524 1.4e-95 353.6 282 69.1
CiPaw.02G124600 Carya illinoinensis HOM05D005420 ORTHO05D006524 1.4e-95 353.6 252 75.0
ECA248G1232 Erigeron canadensis HOM05D005420 ORTHO05D006524 2.3e-95 352.8 228 80.7
HanXRQChr11g0343501 Helianthus annuus HOM05D005420 ORTHO05D006524 2.3e-95 352.8 238 78.6
TWI36G0345 Tripterygium wilfordii HOM05D005420 ORTHO05D006524 2.3e-95 352.8 204 85.8
QL10p064332 Quercus lobata HOM05D005420 ORTHO05D006524 3.1e-95 352.4 260 73.1
Thecc.05G186000 Theobroma cacao HOM05D005420 ORTHO05D006524 3.1e-95 352.4 272 71.7
Lsat_1_v5_gn_1_76981 Lactuca sativa HOM05D005420 ORTHO05D006524 4.0e-95 352.1 197 89.3
MD15G1143300 Malus domestica HOM05D005420 ORTHO05D006524 4.0e-95 352.1 280 70.7
Cpa.g.sc151.6 Carica papaya HOM05D005420 ORTHO05D006524 5.2e-95 351.7 207 86.5
Manes.12G003300 Manihot esculenta HOM05D005420 ORTHO05D006524 5.2e-95 351.7 210 85.7
Potri.013G084300 Populus trichocarpa HOM05D005420 ORTHO05D006524 5.2e-95 351.7 231 79.2
Glyma.07G273700 Glycine max HOM05D005420 ORTHO05D006524 6.8e-95 351.3 253 74.7
Duzib177G0155 Durio zibethinus HOM05D005420 ORTHO05D006524 8.9e-95 350.9 278 71.2
FAN23G1410 Fragaria x ananassa HOM05D005420 ORTHO05D006524 8.9e-95 350.9 284 70.1
CsaV3_7G022350 Cucumis sativus L. HOM05D005420 ORTHO05D006524 1.5e-94 350.1 255 74.9
unitig_699.g19464 Utricularia gibba HOM05D005420 ORTHO05D006524 1.5e-94 350.1 193 91.2
HanXRQChr01g0023651 Helianthus annuus HOM05D005420 ORTHO05D006524 2.0e-94 349.7 240 77.9
VMungo1215G3385 Vigna mungo HOM05D005420 ORTHO05D006524 2.0e-94 349.7 287 68.6
EL10Ac3g06165 Beta vulgaris HOM05D005420 ORTHO05D006524 3.4e-94 349.0 210 84.8
DCAR_005460 Daucus carota HOM05D005420 ORTHO05D006524 3.4e-94 349.0 265 72.8
Lj6C285T2 Lonicera japonica HOM05D005420 ORTHO05D006524 4.4e-94 348.6 197 91.4
TAR636G0539 Trochodendron aralioides HOM05D005420 ORTHO05D006524 4.4e-94 348.6 273 69.6
PGR119G0486 Punica granatum HOM05D005420 ORTHO05D006524 5.8e-94 348.2 197 89.3
CANSAT56G1087 Cannabis sativa HOM05D005420 ORTHO05D006524 7.5e-94 347.8 276 71.7
MBI07_g10354_MAGBIO Magnolia biondii HOM05D005420 ORTHO05D006524 7.5e-94 347.8 259 72.2
GSVIVG01038249001 Vitis vinifera HOM05D005420 ORTHO05D006524 7.5e-94 347.8 204 86.8
Rhsim09G0003700 Rhododendron simsii HOM05D005420 ORTHO05D006524 9.9e-94 347.4 260 75.4
Glyma.17G000800 Glycine max HOM05D005420 ORTHO05D006524 1.7e-93 346.7 253 74.3
Sabra13G0078900 Salix brachista HOM05D005420 ORTHO05D006524 1.7e-93 346.7 231 78.4
Actinidia18399 Actinidia chinensis HOM05D005420 ORTHO05D006524 2.2e-93 346.3 289 67.8
Aqoxy1G01859 Aquilegia oxysepala HOM05D005420 ORTHO05D006524 4.9e-93 345.1 299 68.9
GSVIVG01026140001 Vitis vinifera HOM05D005420 ORTHO05D006524 8.3e-93 344.4 207 83.1
vmacro00721 Vaccinium macrocarpon HOM05D005420 ORTHO05D006524 1.1e-92 344.0 240 77.9
Gohir.D03G071700 Gossypium hirsutum HOM05D005420 ORTHO05D006524 1.4e-92 343.6 247 74.9
Gorai.003G088300 Gossypium raimondii HOM05D005420 ORTHO05D006524 1.4e-92 343.6 247 74.9
unitig_27.g25143 Utricularia gibba HOM05D005420 ORTHO05D006524 1.4e-92 343.6 282 69.9
Ah.07g203200 Amaranthus hybridus HOM05D005420 ORTHO05D006524 1.9e-92 343.2 268 70.5
CDE09G0694 Ceratophyllum demersum HOM05D005420 ORTHO05D006524 2.4e-92 342.8 204 82.8
Phvul.003G074600 Phaseolus vulgaris HOM05D005420 ORTHO05D006524 2.4e-92 342.8 276 70.3
Gohir.A02G106300 Gossypium hirsutum HOM05D005420 ORTHO05D006524 3.2e-92 342.4 247 74.9
C04p04880 Brassica napus HOM05D005420 ORTHO05D006524 5.4e-92 341.7 276 69.2
Aa31LG1G25640 Aethionema arabicum HOM05D005420 ORTHO05D006524 7.1e-92 341.3 212 83.0
Lj4g0016379 Lotus japonicus HOM05D005420 ORTHO05D006524 9.2e-92 340.9 254 73.2
BcaC02g12350 Brassica carinata HOM05D005420 ORTHO05D006524 1.2e-91 340.5 276 69.2
BraA05t19397Z Brassica rapa HOM05D005420 ORTHO05D006524 1.2e-91 340.5 277 70.0
AUR62023710 Chenopodium quinoa HOM05D005420 ORTHO05D006524 1.2e-91 340.5 210 82.9
Sed0010932 Sechium edule HOM05D005420 ORTHO05D006524 1.2e-91 340.5 266 70.3
SGA_v2.0_scaffold12G06218 Striga asiatica HOM05D005420 ORTHO05D006524 2.7e-91 339.3 264 72.0
C03p29330 Brassica napus HOM05D005420 ORTHO05D006524 3.5e-91 339.0 279 68.5
BolC3t15280H Brassica oleracea HOM05D005420 ORTHO05D006524 3.5e-91 339.0 279 68.5
AUR62002482 Chenopodium quinoa HOM05D005420 ORTHO05D006524 7.8e-91 337.8 210 81.9
A05p04100 Brassica napus HOM05D005420 ORTHO05D006524 1.0e-90 337.4 278 69.4
BolC4t22118H Brassica oleracea HOM05D005420 ORTHO05D006524 1.0e-90 337.4 250 74.4
A03p24600 Brassica napus HOM05D005420 ORTHO05D006524 1.3e-90 337.0 280 68.2
Duzib128G1088 Durio zibethinus HOM05D005420 ORTHO05D006524 1.7e-90 336.7 195 87.2
PSO732G0217 Papaver somniferum HOM05D005420 ORTHO05D006524 3.0e-90 335.9 240 74.2
PSO675G2924 Papaver somniferum HOM05D005420 ORTHO05D006524 5.1e-90 335.1 281 65.8
THA.LOC104802345 Tarenaya hassleriana HOM05D005420 ORTHO05D006524 5.1e-90 335.1 212 81.6
HPP92_024700 Vanilla planifolia HOM05D005420 ORTHO05D006524 5.1e-90 335.1 195 84.1
ATR0743G098 Amborella trichopoda HOM05D005420 ORTHO05D006524 8.6e-90 334.3 210 81.0
AL4G42820 Arabidopsis lyrata HOM05D005420 ORTHO05D006524 1.5e-89 333.6 285 67.4
AT2G43945 Arabidopsis thaliana HOM05D005420 ORTHO05D006524 1.5e-89 333.6 253 71.5
BcaB06g29350 Brassica carinata HOM05D005420 ORTHO05D006524 1.5e-89 333.6 217 80.6
Thhalv10001571m.g Eutrema salsugineum HOM05D005420 ORTHO05D006524 1.5e-89 333.6 288 67.0
BraA03t11665Z Brassica rapa HOM05D005420 ORTHO05D006524 2.5e-89 332.8 281 67.3
TWI36G1305 Tripterygium wilfordii HOM05D005420 ORTHO05D006524 2.5e-89 332.8 233 75.1
Carub.0004s2651 Capsella rubella HOM05D005420 ORTHO05D006524 3.3e-89 332.4 271 68.6
BcaB02g08884 Brassica carinata HOM05D005420 ORTHO05D006524 7.3e-89 331.3 214 79.9
AT3G59870 Arabidopsis thaliana HOM05D005420 ORTHO05D006524 1.6e-88 330.1 215 78.6
CARHR139120 Cardamine hirsuta HOM05D005420 ORTHO05D006524 2.1e-88 329.7 295 64.1
THA.LOC104804283 Tarenaya hassleriana HOM05D005420 ORTHO05D006524 2.1e-88 329.7 236 73.3
Carub.0005s2660 Capsella rubella HOM05D005420 ORTHO05D006524 3.6e-88 328.9 245 71.8
Aa31LG10G14100 Aethionema arabicum HOM05D005420 ORTHO05D006524 1.1e-87 327.4 230 73.5
Psat4g001320 Pisum sativum HOM05D005420 ORTHO05D006524 4.0e-87 325.5 246 72.0
Os01g0338600 Oryza sativa ssp. japonica HOM05D005420 ORTHO05D006524 6.8e-87 324.7 195 83.6
Zm00001eb159810 Zea mays HOM05D005420 ORTHO05D006524 1.1e-84 317.4 195 83.1
Sp4g26040 Schrenkiella parvula HOM05D005420 ORTHO05D006524 4.6e-83 312.0 276 65.6
Pp3c24_16460 Physcomitrium patens HOM05D005420 ORTHO05D006524 3.3e-81 305.8 208 75.5
SMO367G0538 Selaginella moellendorffii HOM05D005420 ORTHO05D006524 3.3e-81 305.8 185 82.2
Dinv24753 Davidia involucrata HOM05D005420 ORTHO05D006524 9.6e-81 304.3 249 71.1
SEGI_26827 Sequoiadendron giganteum HOM05D005420 ORTHO05D006524 1.2e-80 303.9 188 82.4
Haze_11131 Corylus avellana HOM05D005420 ORTHO05D006524 2.1e-80 303.1 343 53.1
Pp3c8_21410 Physcomitrium patens HOM05D005420 ORTHO05D006524 2.1e-80 303.1 233 69.1
Mapoly0136s0029 Marchantia polymorpha HOM05D005420 ORTHO05D006524 4.7e-80 302.0 214 74.8
Nn7g37463 Nelumbo nucifera HOM05D005420 ORTHO05D006524 2.1e-75 286.6 246 65.4
Migut.N03031 Erythranthe guttata HOM05D005420 ORTHO05D006524 1.0e-74 284.3 254 65.4
TPR.G6015 Trifolium pratense HOM05D005420 ORTHO05D006524 1.1e-73 280.8 233 67.8
Manes.13G003200 Manihot esculenta HOM05D005420 ORTHO05D006524 5.6e-73 278.5 157 90.4
Nn3g18334 Nelumbo nucifera HOM05D005420 ORTHO05D006524 5.8e-70 268.5 210 69.0
Sc25g0003040 Simmondsia chinensis HOM05D005420 ORTHO05D006524 6.4e-69 265.0 183 76.5
Hund22588 Selenicereus undatus HOM05D005420 ORTHO05D006524 3.9e-66 255.8 219 66.7
Medtr4g134910 Medicago truncatula HOM05D005420 ORTHO05D006524 3.7e-64 249.2 151 84.8
MCO05G102 Micromonas commoda HOM05D005420 ORTHO05D006524 6.2e-64 248.4 160 76.2
Lalb_Chr18g0044961 Lupinus albus HOM05D005420 ORTHO05D006524 5.3e-63 245.4 134 92.5
Cre16.g676450 Chlamydomonas reinhardtii HOM05D005420 ORTHO05D006524 5.8e-62 241.9 192 66.7
Atru.chr12.1711 Acer truncatum HOM05D005420 ORTHO05D006524 2.4e-60 236.5 191 70.2
Oeu022910.1 Olea europaea HOM05D005420 ORTHO05D006524 3.2e-60 236.1 133 90.2
PRCOL_00006877 Prasinoderma coloniale HOM05D005420 ORTHO05D006524 2.1e-59 233.4 160 71.2
Zm00001eb356860 Zea mays HOM05D005420 ORTHO05D006524 3.3e-57 226.1 206 61.2
Ca_13540_v3 Cicer arietinum L. HOM05D005420 ORTHO05D006524 1.0e-53 214.5 247 54.7
AagrBONN_evm.TU.Sc2ySwM_228.1821 Anthoceros agrestis HOM05D005420 ORTHO05D006524 2.0e-46 190.3 144 66.7
Sed0016168 Sechium edule HOM05D005420 ORTHO05D006524 1.3e-37 161.0 90 91.1
CDE02G3676 Ceratophyllum demersum HOM05D005420 ORTHO05D006524 2.2e-37 160.2 165 55.2
MBI07_g42072_MAGBIO Magnolia biondii HOM05D005420 ORTHO05D006524 1.4e-36 157.5 89 87.6
Pp3c20_1670 Physcomitrium patens HOM05D005420 ORTHO05D006524 7.4e-33 145.2 188 46.3
Eucgr.L00810 Eucalyptus grandis HOM05D005420 ORTHO05D006524 1.2e-30 137.9 110 66.4
Eucgr.H01440 Eucalyptus grandis HOM05D005420 ORTHO05D006524 6.5e-29 132.1 132 56.8
MSTRG.9265 Avicennia marina HOM05D005420 ORTHO05D006524 5.3e-23 112.5 82 72.0
Lsat_1_v5_gn_1_75001 Lactuca sativa HOM05D005420 ORTHO05D006524 1.6e-22 110.9 78 69.2
Lsat_1_v5_gn_5_160100 Lactuca sativa HOM05D005420 ORTHO05D006524 1.3e-21 107.8 78 67.9
CBR_g10867 Chara braunii HOM05D005420 ORTHO05D006524 9.7e-17 91.7 62 69.4
Sed0003231 Sechium edule HOM05D005420 ORTHO05D006524 7.5e-09 65.5 105 41.0
Lalb_Chr18g0044971 Lupinus albus HOM05D005420 ORTHO05D006524 1.4e-07 61.2 99 43.4


User provided reference genes

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