Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0008181g0010 Nicotiana tabacum HOM05D004850 ORTHO05D005971 6.3e-131 470.7 226 100.0
Nitab4.5_0001963g0010 Nicotiana tabacum HOM05D004850 ORTHO05D005971 1.0e-125 453.4 226 96.5
Solyc08g076990.3 Solanum lycopersicum HOM05D004850 ORTHO05D005971 2.7e-121 438.7 224 93.3
Sopen08g025570 Solanum pennellii HOM05D004850 ORTHO05D005971 5.9e-121 437.6 224 92.9
CAN.G1381.2 Capsicum annuum HOM05D004850 ORTHO05D005971 7.7e-121 437.2 224 92.9
Peaxi162Scf00460g00615 Petunia axillaris HOM05D004850 ORTHO05D005971 1.0e-120 436.8 224 93.8
Lj2A240G35 Lonicera japonica HOM05D004850 ORTHO05D005971 7.2e-119 430.6 225 89.3
Cc00_g30170 Coffea canephora HOM05D004850 ORTHO05D005971 3.4e-116 421.8 222 90.5
Oeu006991.2 Olea europaea HOM05D004850 ORTHO05D005971 1.7e-115 419.5 224 87.9
ECA233G2661 Erigeron canadensis HOM05D004850 ORTHO05D005971 2.8e-115 418.7 223 88.3
Migut.E00931 Erythranthe guttata HOM05D004850 ORTHO05D005971 4.9e-115 417.9 225 88.0
MSTRG.1982 Avicennia marina HOM05D004850 ORTHO05D005971 2.4e-114 415.6 224 87.9
HanXRQChr06g0178401 Helianthus annuus HOM05D004850 ORTHO05D005971 9.2e-114 413.7 223 87.9
Dinv28952 Davidia involucrata HOM05D004850 ORTHO05D005971 7.8e-113 410.6 224 87.1
Lsat_1_v5_gn_6_64460 Lactuca sativa HOM05D004850 ORTHO05D005971 1.0e-112 410.2 223 85.2
Rhsim11G0014400 Rhododendron simsii HOM05D004850 ORTHO05D005971 1.7e-112 409.5 225 86.2
Sc01g0007470 Simmondsia chinensis HOM05D004850 ORTHO05D005971 2.3e-112 409.1 224 85.7
TWI15G0149 Tripterygium wilfordii HOM05D004850 ORTHO05D005971 2.3e-112 409.1 223 85.2
vmacro00333 Vaccinium macrocarpon HOM05D004850 ORTHO05D005971 2.9e-112 408.7 225 86.7
Hma1.2p1_0991F.1_g245100 Hydrangea macrophylla HOM05D004850 ORTHO05D005971 5.0e-112 407.9 224 86.6
CiPaw.11G092600 Carya illinoinensis HOM05D004850 ORTHO05D005971 8.6e-112 407.1 223 85.7
Thecc.03G228700 Theobroma cacao HOM05D004850 ORTHO05D005971 1.1e-111 406.8 223 86.5
Actinidia03377 Actinidia chinensis HOM05D004850 ORTHO05D005971 1.5e-111 406.4 223 85.7
Cfa012428 Carpinus fangiana HOM05D004850 ORTHO05D005971 1.5e-111 406.4 223 86.5
Dinv25211 Davidia involucrata HOM05D004850 ORTHO05D005971 1.9e-111 406.0 224 83.9
CSS0027944 Camellia sinensis var. sinensis HOM05D004850 ORTHO05D005971 4.3e-111 404.8 224 84.8
Potri.001G143200 Populus trichocarpa HOM05D004850 ORTHO05D005971 5.6e-111 404.4 226 83.2
Prupe.5G038300 Prunus persica HOM05D004850 ORTHO05D005971 7.3e-111 404.1 223 86.5
Sabra03G0060800 Salix brachista HOM05D004850 ORTHO05D005971 7.3e-111 404.1 226 83.2
unitig_21.g20382 Utricularia gibba HOM05D004850 ORTHO05D005971 7.3e-111 404.1 218 87.6
Duzib084G0351 Durio zibethinus HOM05D004850 ORTHO05D005971 9.5e-111 403.7 223 86.1
Potri.003G091100 Populus trichocarpa HOM05D004850 ORTHO05D005971 1.2e-110 403.3 226 83.6
QL12p005631 Quercus lobata HOM05D004850 ORTHO05D005971 1.6e-110 402.9 223 84.3
Cpa.g.sc239.6 Carica papaya HOM05D004850 ORTHO05D005971 2.1e-110 402.5 223 86.1
arahy.Tifrunner.gnm1.ann1.IM2DA2 Arachis hypogaea HOM05D004850 ORTHO05D005971 2.8e-110 402.1 226 84.1
arahy.Tifrunner.gnm1.ann1.Y05B39 Arachis hypogaea HOM05D004850 ORTHO05D005971 2.8e-110 402.1 226 84.1
Haze_08241 Corylus avellana HOM05D004850 ORTHO05D005971 2.8e-110 402.1 223 85.7
SGA_v2.0_scaffold20G09279 Striga asiatica HOM05D004850 ORTHO05D005971 2.8e-110 402.1 256 78.1
DCAR_031774 Daucus carota HOM05D004850 ORTHO05D005971 3.6e-110 401.7 224 84.4
Lalb_Chr05g0213951 Lupinus albus HOM05D004850 ORTHO05D005971 3.6e-110 401.7 224 83.9
EL10Ac5g12130 Beta vulgaris HOM05D004850 ORTHO05D005971 6.1e-110 401.0 223 83.9
Gohir.A03G001400 Gossypium hirsutum HOM05D004850 ORTHO05D005971 6.1e-110 401.0 223 86.1
Gohir.D03G170933 Gossypium hirsutum HOM05D004850 ORTHO05D005971 6.1e-110 401.0 223 86.1
Gorai.003G181400 Gossypium raimondii HOM05D004850 ORTHO05D005971 6.1e-110 401.0 223 86.1
Lalb_Chr16g0379121 Lupinus albus HOM05D004850 ORTHO05D005971 1.8e-109 399.4 226 81.9
MD06G1033100 Malus domestica HOM05D004850 ORTHO05D005971 2.3e-109 399.1 223 85.2
Duzib205G2010 Durio zibethinus HOM05D004850 ORTHO05D005971 3.1e-109 398.7 223 84.3
Ah.12g054980 Amaranthus hybridus HOM05D004850 ORTHO05D005971 4.0e-109 398.3 223 83.4
COL.COLO4_17049 Corchorus olitorius HOM05D004850 ORTHO05D005971 4.0e-109 398.3 223 86.1
Manes.17G013000 Manihot esculenta HOM05D004850 ORTHO05D005971 5.2e-109 397.9 226 83.2
Ca_24651_v3 Cicer arietinum L. HOM05D004850 ORTHO05D005971 6.8e-109 397.5 221 84.2
THA.LOC104827763 Tarenaya hassleriana HOM05D004850 ORTHO05D005971 6.8e-109 397.5 223 85.7
A01p09880 Brassica napus HOM05D004850 ORTHO05D005971 2.6e-108 395.6 219 86.3
Lj2g0005935 Lotus japonicus HOM05D004850 ORTHO05D005971 3.4e-108 395.2 224 81.7
VMungo1215G1005 Vigna mungo HOM05D004850 ORTHO05D005971 3.4e-108 395.2 219 84.0
CANSAT21G2632 Cannabis sativa HOM05D004850 ORTHO05D005971 4.4e-108 394.8 223 82.5
C07p49180 Brassica napus HOM05D004850 ORTHO05D005971 5.8e-108 394.4 219 85.8
BolC7t45428H Brassica oleracea HOM05D004850 ORTHO05D005971 5.8e-108 394.4 219 85.8
MD16G1275900 Malus domestica HOM05D004850 ORTHO05D005971 7.5e-108 394.0 223 84.8
Sp7g16280 Schrenkiella parvula HOM05D004850 ORTHO05D005971 7.5e-108 394.0 219 85.4
A03p50790 Brassica napus HOM05D004850 ORTHO05D005971 9.8e-108 393.7 219 85.4
Thhalv10025214m.g Eutrema salsugineum HOM05D004850 ORTHO05D005971 1.3e-107 393.3 219 85.8
BcaC09g51599 Brassica carinata HOM05D004850 ORTHO05D005971 1.7e-107 392.9 219 85.4
Phvul.002G007200 Phaseolus vulgaris HOM05D004850 ORTHO05D005971 1.7e-107 392.9 219 83.6
Ciclev10031569m.g Citrus clementina HOM05D004850 ORTHO05D005971 2.9e-107 392.1 223 82.5
Eucgr.D02190 Eucalyptus grandis HOM05D004850 ORTHO05D005971 2.9e-107 392.1 223 83.9
Glyma.11G043300 Glycine max HOM05D004850 ORTHO05D005971 2.9e-107 392.1 219 83.1
BraA03t14168Z Brassica rapa HOM05D004850 ORTHO05D005971 3.7e-107 391.7 219 85.4
CARHR224550 Cardamine hirsuta HOM05D004850 ORTHO05D005971 3.7e-107 391.7 219 84.9
FAN08G3086 Fragaria x ananassa HOM05D004850 ORTHO05D005971 3.7e-107 391.7 223 82.5
FAN13G0589 Fragaria x ananassa HOM05D004850 ORTHO05D005971 3.7e-107 391.7 223 82.5
RcHm_v2.0_Chr7g0209441 Rosa chinensis HOM05D004850 ORTHO05D005971 3.7e-107 391.7 223 83.0
AUR62018722 Chenopodium quinoa HOM05D004850 ORTHO05D005971 4.9e-107 391.3 221 82.8
Nn6g33598 Nelumbo nucifera HOM05D004850 ORTHO05D005971 4.9e-107 391.3 223 83.0
Carub.0007s2353 Capsella rubella HOM05D004850 ORTHO05D005971 8.3e-107 390.6 219 84.9
FvH4_5g21890 Fragaria vesca HOM05D004850 ORTHO05D005971 8.3e-107 390.6 223 82.5
FAN18G1246 Fragaria x ananassa HOM05D004850 ORTHO05D005971 8.3e-107 390.6 223 82.5
Medtr5g014410 Medicago truncatula HOM05D004850 ORTHO05D005971 1.9e-106 389.4 221 82.4
Aqoxy3G02383 Aquilegia oxysepala HOM05D004850 ORTHO05D005971 4.1e-106 388.3 224 79.9
Aa31LG6G570 Aethionema arabicum HOM05D004850 ORTHO05D005971 7.0e-106 387.5 219 84.5
PSO063G6489 Papaver somniferum HOM05D004850 ORTHO05D005971 1.6e-105 386.3 222 81.5
AL7G36700 Arabidopsis lyrata HOM05D004850 ORTHO05D005971 2.0e-105 386.0 221 81.9
BraA01t00932Z Brassica rapa HOM05D004850 ORTHO05D005971 2.7e-105 385.6 234 80.8
TAR629G1238 Trochodendron aralioides HOM05D004850 ORTHO05D005971 3.5e-105 385.2 224 82.1
Psat2g173240 Pisum sativum HOM05D004850 ORTHO05D005971 7.8e-105 384.0 219 81.3
Sabra01G0111700 Salix brachista HOM05D004850 ORTHO05D005971 3.9e-104 381.7 264 70.8
AT4G17830 Arabidopsis thaliana HOM05D004850 ORTHO05D005971 6.6e-104 380.9 219 82.2
HanXRQChr10g0285061 Helianthus annuus HOM05D004850 ORTHO05D005971 6.6e-104 380.9 223 79.8
PGR031G0111 Punica granatum HOM05D004850 ORTHO05D005971 8.6e-104 380.6 223 79.8
CDE11G0367 Ceratophyllum demersum HOM05D004850 ORTHO05D005971 1.4e-101 373.2 224 77.2
Sopen08g025550 Solanum pennellii HOM05D004850 ORTHO05D005971 8.9e-101 370.5 226 77.9
HPP92_001721 Vanilla planifolia HOM05D004850 ORTHO05D005971 1.2e-100 370.2 225 76.0
Solyc08g076970.3 Solanum lycopersicum HOM05D004850 ORTHO05D005971 2.0e-100 369.4 226 77.0
Psat2g173320 Pisum sativum HOM05D004850 ORTHO05D005971 3.4e-100 368.6 224 76.8
Solyc08g076980.4 Solanum lycopersicum HOM05D004850 ORTHO05D005971 7.5e-100 367.5 226 76.5
Sopen08g025560 Solanum pennellii HOM05D004850 ORTHO05D005971 7.5e-100 367.5 226 76.5
Glyma.01G198600 Glycine max HOM05D004850 ORTHO05D005971 1.1e-98 363.6 219 77.6
PGSC0003DMG400017513 Solanum tuberosum HOM05D004850 ORTHO05D005971 2.4e-98 362.5 226 75.7
ATR0049G003 Amborella trichopoda HOM05D004850 ORTHO05D005971 1.3e-96 356.7 225 75.1
AUR62007282 Chenopodium quinoa HOM05D004850 ORTHO05D005971 2.8e-94 349.0 197 82.7
Nn1g00519 Nelumbo nucifera HOM05D004850 ORTHO05D005971 1.8e-93 346.3 224 75.9
MELO3C003400.2 Cucumis melo HOM05D004850 ORTHO05D005971 2.3e-93 345.9 227 72.2
CsaV3_3G049270 Cucumis sativus L. HOM05D004850 ORTHO05D005971 5.8e-92 341.3 227 71.4
ClCG09G012020 Citrullus lanatus HOM05D004850 ORTHO05D005971 9.9e-92 340.5 227 70.5
SMO353G0234 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 7.1e-90 334.3 216 74.1
AagrBONN_evm.TU.Sc2ySwM_117.1258 Anthoceros agrestis HOM05D004850 ORTHO05D005971 1.2e-89 333.6 217 72.8
Os02g0690800 Oryza sativa ssp. japonica HOM05D004850 ORTHO05D005971 2.1e-89 332.8 228 68.9
Pp3c6_20970 Physcomitrium patens HOM05D004850 ORTHO05D005971 4.6e-89 331.6 216 70.4
Sed0011615 Sechium edule HOM05D004850 ORTHO05D005971 2.3e-88 329.3 225 67.6
Zm00001eb251190 Zea mays HOM05D004850 ORTHO05D005971 3.9e-88 328.6 227 66.5
Sed0023890 Sechium edule HOM05D004850 ORTHO05D005971 1.5e-87 326.6 225 68.9
ClCG09G012030 Citrullus lanatus HOM05D004850 ORTHO05D005971 1.1e-85 320.5 226 66.4
ClCG09G012040 Citrullus lanatus HOM05D004850 ORTHO05D005971 1.8e-85 319.7 226 65.5
Mapoly0013s0175 Marchantia polymorpha HOM05D004850 ORTHO05D005971 5.4e-82 308.1 216 69.0
MELO3C003398.2 Cucumis melo HOM05D004850 ORTHO05D005971 5.1e-80 301.6 227 63.0
Cre02.g105500 Chlamydomonas reinhardtii HOM05D004850 ORTHO05D005971 9.6e-79 297.4 217 63.1
MELO3C003399.2 Cucumis melo HOM05D004850 ORTHO05D005971 9.6e-79 297.4 227 62.6
CsaV3_3G049280 Cucumis sativus L. HOM05D004850 ORTHO05D005971 1.6e-78 296.6 227 63.4
SHI07365 Sapria himalayana HOM05D004850 ORTHO05D005971 2.1e-78 296.2 190 72.6
CBR_g51240 Chara braunii HOM05D004850 ORTHO05D005971 2.8e-78 295.8 227 65.6
MCO07G613 Micromonas commoda HOM05D004850 ORTHO05D005971 2.9e-67 259.2 220 57.7
Cc11_g03830 Coffea canephora HOM05D004850 ORTHO05D005971 8.4e-67 257.7 131 93.1
GSVIVG01013167001 Vitis vinifera HOM05D004850 ORTHO05D005971 1.9e-63 246.5 131 87.8
Atru.chr6.1718 Acer truncatum HOM05D004850 ORTHO05D005971 2.1e-62 243.0 129 87.6
SMO116G0259 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 4.0e-61 238.8 217 53.5
BolC1t01126H Brassica oleracea HOM05D004850 ORTHO05D005971 1.5e-60 236.9 147 79.6
MD06G1033200 Malus domestica HOM05D004850 ORTHO05D005971 7.6e-60 234.6 129 86.0
C01p11580 Brassica napus HOM05D004850 ORTHO05D005971 2.3e-56 223.0 152 72.4
Actinidia28173 Actinidia chinensis HOM05D004850 ORTHO05D005971 5.1e-56 221.9 224 55.8
Actinidia25960 Actinidia chinensis HOM05D004850 ORTHO05D005971 1.1e-55 220.7 224 55.4
Sc22g0003350 Simmondsia chinensis HOM05D004850 ORTHO05D005971 2.4e-37 159.8 86 87.2
Sc02g0006900 Simmondsia chinensis HOM05D004850 ORTHO05D005971 4.1e-37 159.1 86 87.2
arahy.Tifrunner.gnm1.ann1.RD5L31 Arachis hypogaea HOM05D004850 ORTHO05D005971 3.6e-33 146.0 93 75.3
MD02G1199500 Malus domestica HOM05D004850 ORTHO05D048674 2.6e-31 139.8 201 41.3
SEGI_19032 Sequoiadendron giganteum HOM05D004850 ORTHO05D005971 5.7e-31 138.7 82 82.9
HPP92_001566 Vanilla planifolia HOM05D004850 ORTHO05D005971 2.2e-30 136.7 130 59.2
Hma1.2p1_0090F.1_g045780 Hydrangea macrophylla HOM05D004850 ORTHO05D005971 1.1e-26 124.4 78 73.1
Cc06_g05830 Coffea canephora HOM05D004850 ORTHO05D005971 4.1e-21 105.9 63 81.0
MD15G1380000 Malus domestica HOM05D004850 ORTHO05D048674 5.0e-19 99.0 54 77.8
SMO116G0465 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 8.0e-17 91.7 183 33.3
Lsat_1_v5_gn_9_53361 Lactuca sativa HOM05D003461 ORTHO05D004386 1.1e-13 81.3 36 91.7
Sc03g0003930 Simmondsia chinensis HOM05D004850 ORTHO05D005971 1.4e-13 80.9 36 88.9
Lsat_1_v5_gn_4_90040 Lactuca sativa HOM05D003461 ORTHO05D004386 4.1e-13 79.3 36 91.7
SEGI_04366 Sequoiadendron giganteum HOM05D004850 ORTHO05D005971 6.5e-11 72.0 36 80.6
Lsat_1_v5_gn_8_141060 Lactuca sativa HOM05D003461 ORTHO05D004386 2.1e-09 67.0 36 77.8


User provided reference genes

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