Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0008177g0070 Nicotiana tabacum HOM05D004765 ORTHO05D005900 0.0e+00 1201.8 618 100.0
Nitab4.5_0000731g0090 Nicotiana tabacum HOM05D004765 ORTHO05D005900 1.9e-286 988.8 608 86.8
Sopen11g027390 Solanum pennellii HOM05D004765 ORTHO05D005900 1.8e-284 982.2 621 84.5
Solyc11g068670.2 Solanum lycopersicum HOM05D004765 ORTHO05D005900 5.7e-283 977.2 621 84.2
CAN.G745.10 Capsicum annuum HOM05D004765 ORTHO05D005900 6.7e-276 953.7 618 81.6
Peaxi162Scf00224g00217 Petunia axillaris HOM05D004765 ORTHO05D005900 4.4e-275 951.0 618 82.7
Peaxi162Scf00345g01023 Petunia axillaris HOM05D004765 ORTHO05D005900 1.2e-264 916.4 625 77.1
Nitab4.5_0000227g0370 Nicotiana tabacum HOM05D004765 ORTHO05D005900 9.4e-262 906.7 622 77.7
Solyc01g009380.3 Solanum lycopersicum HOM05D004765 ORTHO05D005900 6.1e-261 904.0 621 77.1
Nitab4.5_0003068g0090 Nicotiana tabacum HOM05D004765 ORTHO05D005900 1.3e-258 896.3 608 78.3
Dinv22819 Davidia involucrata HOM05D004765 ORTHO05D005900 8.3e-242 840.5 621 72.0
Dinv08934 Davidia involucrata HOM05D004765 ORTHO05D005900 9.2e-241 837.0 621 71.5
Cc01_g08830 Coffea canephora HOM05D004765 ORTHO05D005900 1.6e-240 836.3 640 69.5
CSS0013873 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 1.0e-239 833.6 606 73.1
Migut.N02474 Erythranthe guttata HOM05D004765 ORTHO05D005900 1.0e-239 833.6 623 71.6
CSS0028820 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 1.7e-239 832.8 606 73.1
Actinidia07259 Actinidia chinensis HOM05D004765 ORTHO05D005900 5.0e-239 831.2 604 72.8
Actinidia24229 Actinidia chinensis HOM05D004765 ORTHO05D005900 6.6e-239 830.9 604 72.2
CSS0015967 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 4.3e-238 828.2 611 72.3
MSTRG.18770 Avicennia marina HOM05D004765 ORTHO05D005900 1.2e-237 826.6 619 70.4
GSVIVG01036081001 Vitis vinifera HOM05D004765 ORTHO05D005900 2.8e-237 825.5 620 70.8
CSS0022046 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 3.6e-237 825.1 611 72.0
vmacro14340 Vaccinium macrocarpon HOM05D004765 ORTHO05D005900 6.2e-237 824.3 603 71.8
Cfa009988 Carpinus fangiana HOM05D004765 ORTHO05D005900 8.0e-237 823.9 604 72.8
Prupe.6G135800 Prunus persica HOM05D004765 ORTHO05D005900 5.8e-235 817.8 606 71.9
CiPaw.14G098100 Carya illinoinensis HOM05D004765 ORTHO05D005900 6.4e-234 814.3 606 71.0
DCAR_006171 Daucus carota HOM05D004765 ORTHO05D005900 1.1e-233 813.5 603 70.8
Potri.009G160400 Populus trichocarpa HOM05D004765 ORTHO05D005900 5.4e-233 811.2 622 69.1
Manes.11G164300 Manihot esculenta HOM05D004765 ORTHO05D005900 9.2e-233 810.4 621 68.4
Ciclev10028115m.g Citrus clementina HOM05D004765 ORTHO05D005900 2.0e-232 809.3 619 69.5
PGR119G0504 Punica granatum HOM05D004765 ORTHO05D005900 5.0e-231 804.7 621 69.2
RcHm_v2.0_Chr5g0045881 Rosa chinensis HOM05D004765 ORTHO05D005900 1.1e-230 803.5 612 70.6
Thecc.09G278900 Theobroma cacao HOM05D004765 ORTHO05D005900 5.6e-230 801.2 603 70.1
Cpa.g.sc195.23 Carica papaya HOM05D004765 ORTHO05D005900 7.3e-230 800.8 607 69.4
QL01p011857 Quercus lobata HOM05D004765 ORTHO05D005900 7.3e-230 800.8 620 69.4
ECA248G3663 Erigeron canadensis HOM05D004765 ORTHO05D005900 9.5e-230 800.4 605 69.8
MD03G1149800 Malus domestica HOM05D004765 ORTHO05D005900 1.6e-229 799.7 606 70.6
Haze_23347 Corylus avellana HOM05D004765 ORTHO05D005900 2.1e-229 799.3 672 65.6
TWI31G1403 Tripterygium wilfordii HOM05D004765 ORTHO05D005900 3.6e-229 798.5 605 69.3
Hund20934 Selenicereus undatus HOM05D004765 ORTHO05D005900 1.8e-228 796.2 607 69.4
TPR.G17196 Trifolium pratense HOM05D004765 ORTHO05D005900 1.8e-228 796.2 604 69.5
Ca_19442_v3 Cicer arietinum L. HOM05D004765 ORTHO05D005900 2.3e-228 795.8 604 69.2
Rhsim01G0203800 Rhododendron simsii HOM05D004765 ORTHO05D005900 3.1e-228 795.4 656 66.2
CANSAT54G2137 Cannabis sativa HOM05D004765 ORTHO05D005900 8.9e-228 793.9 623 68.5
COL.COLO4_34006 Corchorus olitorius HOM05D004765 ORTHO05D005900 5.8e-227 791.2 603 69.3
Gohir.D05G082500 Gossypium hirsutum HOM05D004765 ORTHO05D005900 9.9e-227 790.4 603 69.2
Sabra09G0125600 Salix brachista HOM05D004765 ORTHO05D005900 9.9e-227 790.4 627 67.3
MD11G1168600 Malus domestica HOM05D004765 ORTHO05D005900 2.2e-226 789.3 606 69.6
HanXRQChr11g0343661 Helianthus annuus HOM05D004765 ORTHO05D005900 2.9e-226 788.9 606 68.2
Gorai.009G084100 Gossypium raimondii HOM05D004765 ORTHO05D005900 3.7e-226 788.5 603 69.0
Lalb_Chr01g0004931 Lupinus albus HOM05D004765 ORTHO05D005900 6.4e-226 787.7 619 66.7
Glyma.12G091700 Glycine max HOM05D004765 ORTHO05D005900 8.3e-226 787.3 603 68.3
Lsat_1_v5_gn_1_77581 Lactuca sativa HOM05D004765 ORTHO05D005900 1.4e-225 786.6 606 68.5
TWI79G1303 Tripterygium wilfordii HOM05D004765 ORTHO05D005900 1.4e-225 786.6 605 67.9
Medtr4g052530 Medicago truncatula HOM05D004765 ORTHO05D005900 1.9e-225 786.2 623 66.9
Gohir.A05G079600 Gossypium hirsutum HOM05D004765 ORTHO05D005900 5.4e-225 784.6 603 69.0
HanXRQChr01g0024031 Helianthus annuus HOM05D004765 ORTHO05D005900 5.4e-225 784.6 604 67.5
Glyma.11G181400 Glycine max HOM05D004765 ORTHO05D005900 7.1e-225 784.3 603 68.2
Sc12g0004610 Simmondsia chinensis HOM05D004765 ORTHO05D005900 1.2e-224 783.5 607 68.7
Gorai.006G113500 Gossypium raimondii HOM05D004765 ORTHO05D005900 1.6e-224 783.1 624 66.8
Carub.0005s1005 Capsella rubella HOM05D004765 ORTHO05D005900 4.6e-224 781.6 616 66.9
Gohir.D09G096800 Gossypium hirsutum HOM05D004765 ORTHO05D005900 4.6e-224 781.6 624 66.8
Lj3g0002417 Lotus japonicus HOM05D004765 ORTHO05D005900 4.6e-224 781.6 621 66.5
CARHR104550 Cardamine hirsuta HOM05D004765 ORTHO05D005900 7.8e-224 780.8 603 68.2
FAN11G2377 Fragaria x ananassa HOM05D004765 ORTHO05D005900 7.8e-224 780.8 612 68.8
Lalb_Chr03g0028231 Lupinus albus HOM05D004765 ORTHO05D005900 7.8e-224 780.8 604 68.5
Potri.004G198200 Populus trichocarpa HOM05D004765 ORTHO05D005900 7.8e-224 780.8 622 66.7
FAN16G1441 Fragaria x ananassa HOM05D004765 ORTHO05D005900 1.3e-223 780.0 612 68.8
Phvul.011G096100 Phaseolus vulgaris HOM05D004765 ORTHO05D005900 1.3e-223 780.0 601 67.9
SGA_v2.0_scaffold177G39433 Striga asiatica HOM05D004765 ORTHO05D005900 1.3e-223 780.0 625 66.2
Gohir.A09G097000 Gossypium hirsutum HOM05D004765 ORTHO05D005900 2.3e-223 779.2 624 66.5
Sabra04G0134200 Salix brachista HOM05D004765 ORTHO05D005900 3.0e-223 778.9 619 66.6
SalBow6G2851 Salvia bowleyana HOM05D004765 ORTHO05D005900 3.9e-223 778.5 663 64.4
arahy.Tifrunner.gnm1.ann1.HXUJ4C Arachis hypogaea HOM05D004765 ORTHO05D005900 1.9e-222 776.2 604 68.2
Sp5g16890 Schrenkiella parvula HOM05D004765 ORTHO05D005900 3.3e-222 775.4 616 66.7
Oeu051604.1 Olea europaea HOM05D004765 ORTHO05D005900 7.3e-222 774.2 626 67.3
arahy.Tifrunner.gnm1.ann1.E8Y1JT Arachis hypogaea HOM05D004765 ORTHO05D005900 1.2e-221 773.5 604 68.0
ATR0081G060 Amborella trichopoda HOM05D004765 ORTHO05D005900 1.6e-221 773.1 603 66.8
AL5G22480 Arabidopsis lyrata HOM05D004765 ORTHO05D005900 2.1e-221 772.7 613 66.9
AT3G44330 Arabidopsis thaliana HOM05D004765 ORTHO05D005900 4.7e-221 771.5 613 66.6
BraA06t25294Z Brassica rapa HOM05D004765 ORTHO05D005900 6.2e-221 771.2 617 66.9
Thhalv10010249m.g Eutrema salsugineum HOM05D004765 ORTHO05D005900 2.4e-220 769.2 618 66.2
THA.LOC104814781 Tarenaya hassleriana HOM05D004765 ORTHO05D005900 4.0e-220 768.5 614 66.3
PSO801G0028 Papaver somniferum HOM05D004765 ORTHO05D005900 5.2e-220 768.1 611 67.8
FAN25G0471 Fragaria x ananassa HOM05D004765 ORTHO05D005900 8.9e-220 767.3 629 66.8
FAN21G2648 Fragaria x ananassa HOM05D004765 ORTHO05D005900 1.2e-219 766.9 627 67.0
ClCG01G011820 Citrullus lanatus HOM05D004765 ORTHO05D005900 2.0e-219 766.1 622 66.6
Sed0019641 Sechium edule HOM05D004765 ORTHO05D005900 2.0e-219 766.1 606 67.5
BcaB01g01169 Brassica carinata HOM05D004765 ORTHO05D005900 4.4e-219 765.0 617 65.5
PSO339G1244 Papaver somniferum HOM05D004765 ORTHO05D005900 1.3e-218 763.5 611 67.1
A06p22050 Brassica napus HOM05D004765 ORTHO05D005900 1.7e-218 763.1 614 66.4
Atru.chr3.3169 Acer truncatum HOM05D004765 ORTHO05D005900 2.9e-218 762.3 601 68.7
C03p69330 Brassica napus HOM05D004765 ORTHO05D005900 1.1e-217 760.4 617 66.1
BolC3t19191H Brassica oleracea HOM05D004765 ORTHO05D005900 1.1e-217 760.4 617 66.1
BcaC01g02031 Brassica carinata HOM05D004765 ORTHO05D005900 7.1e-217 757.7 617 65.8
MELO3C025589.2 Cucumis melo HOM05D004765 ORTHO05D005900 2.1e-216 756.1 621 66.0
BcaC01g02231 Brassica carinata HOM05D004765 ORTHO05D005900 2.7e-216 755.7 615 65.7
A06p26850 Brassica napus HOM05D004765 ORTHO05D005900 4.6e-216 755.0 613 66.1
CsaV3_1G015080 Cucumis sativus L. HOM05D004765 ORTHO05D005900 6.0e-216 754.6 621 65.7
Nn6g34806 Nelumbo nucifera HOM05D004765 ORTHO05D005900 1.7e-215 753.1 621 65.9
BcaB02g10755 Brassica carinata HOM05D004765 ORTHO05D005900 7.3e-214 747.7 602 65.9
SGA_v2.0_scaffold295G47508 Striga asiatica HOM05D004765 ORTHO05D005900 1.6e-213 746.5 612 63.9
Eucgr.J00522 Eucalyptus grandis HOM05D004765 ORTHO05D005900 3.6e-213 745.3 588 67.3
Aqoxy2G01052 Aquilegia oxysepala HOM05D004765 ORTHO05D005900 6.9e-212 741.1 619 64.0
AUR62020257 Chenopodium quinoa HOM05D004765 ORTHO05D005900 2.0e-211 739.6 580 67.8
CDE08G1681 Ceratophyllum demersum HOM05D004765 ORTHO05D005900 4.4e-211 738.4 585 66.3
Aa31LG4G13830 Aethionema arabicum HOM05D004765 ORTHO05D005900 2.1e-208 729.6 582 65.6
Duzib170G0619 Durio zibethinus HOM05D004765 ORTHO05D005900 4.6e-208 728.4 603 64.8
unitig_0.g1473 Utricularia gibba HOM05D004765 ORTHO05D005900 3.6e-205 718.8 615 62.9
EL10Ac7g16329 Beta vulgaris HOM05D004765 ORTHO05D005900 4.8e-205 718.4 683 58.9
Psat7g187280 Pisum sativum HOM05D004765 ORTHO05D005900 4.0e-204 715.3 558 66.8
HPP92_006357 Vanilla planifolia HOM05D004765 ORTHO05D005900 9.9e-203 710.7 603 62.9
Aqoxy4G02718 Aquilegia oxysepala HOM05D004765 ORTHO05D005900 2.2e-202 709.5 659 59.3
Os08g0102100 Oryza sativa ssp. japonica HOM05D004765 ORTHO05D005900 7.1e-201 704.5 600 61.0
Migut.D02363 Erythranthe guttata HOM05D004765 ORTHO05D005900 1.6e-197 693.3 531 68.0
Lj1A257T30 Lonicera japonica HOM05D004765 ORTHO05D005900 2.1e-197 693.0 490 74.1
Zm00001eb259900 Zea mays HOM05D004765 ORTHO05D005900 3.4e-195 685.6 602 60.0
CDE02G4012 Ceratophyllum demersum HOM05D004765 ORTHO05D005900 9.3e-193 677.6 606 61.2
Duzib168G0312 Durio zibethinus HOM05D004765 ORTHO05D005900 5.6e-190 668.3 603 61.5
FvH4_3g25670 Fragaria vesca HOM05D004765 ORTHO05D005900 7.9e-184 647.9 527 66.4
Mapoly0185s0020 Marchantia polymorpha HOM05D004765 ORTHO05D005900 2.8e-181 639.4 599 56.1
Sc12g0004660 Simmondsia chinensis HOM05D004765 ORTHO05D005900 4.1e-180 635.6 536 64.4
Pp3c12_11630 Physcomitrium patens HOM05D004765 ORTHO05D005900 1.1e-177 627.5 601 55.7
Zm00001eb198750 Zea mays HOM05D004765 ORTHO05D005900 1.8e-175 620.2 549 58.5
SMO141G0161 Selaginella moellendorffii HOM05D004765 ORTHO05D005900 1.9e-169 600.1 607 54.0
AUR62001526 Chenopodium quinoa HOM05D004765 ORTHO05D005900 9.7e-158 561.2 460 65.2
Sopen01g004890 Solanum pennellii HOM05D004765 ORTHO05D005900 2.2e-154 550.1 342 81.6
Oeu014468.1 Olea europaea HOM05D004765 ORTHO05D005900 1.5e-153 547.4 414 71.5
BraA06t25618Z Brassica rapa HOM05D004765 ORTHO05D005900 2.8e-149 533.1 455 62.6
TAR633G2468 Trochodendron aralioides HOM05D004765 ORTHO05D005900 6.3e-149 531.9 356 75.8
C03p67600 Brassica napus HOM05D004765 ORTHO05D005900 1.1e-148 531.2 457 61.9
BolSC21t60262H Brassica oleracea HOM05D004765 ORTHO05D005900 1.2e-147 527.7 457 61.7
CBR_g17963 Chara braunii HOM05D004765 ORTHO05D005900 1.7e-141 507.3 602 46.8
CAN.G226.4 Capsicum annuum HOM05D004765 ORTHO05D005900 5.4e-132 475.7 275 86.5
AagrBONN_evm.TU.Sc2ySwM_368.2350 Anthoceros agrestis HOM05D004765 ORTHO05D005900 1.4e-124 451.1 586 43.0
VMungo1127G1239 Vigna mungo HOM05D004765 ORTHO05D005900 3.9e-106 389.8 327 64.5
CAN.G30.1 Capsicum annuum HOM05D004765 ORTHO05D005900 1.9e-89 334.3 196 82.7
SEGI_38882 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 5.3e-87 326.2 275 63.3
Migut.D02428 Erythranthe guttata HOM05D004765 ORTHO05D005900 3.0e-82 310.5 200 82.0
Psat4g157520 Pisum sativum HOM05D004765 ORTHO05D005900 1.8e-66 258.1 195 67.7
CAN.G198.33 Capsicum annuum HOM05D004765 ORTHO05D005900 3.1e-55 220.7 152 72.4
CAN.G1211.3 Capsicum annuum HOM05D004765 ORTHO05D005900 1.1e-52 212.2 147 74.1
SEGI_20304 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 6.1e-51 206.5 141 73.0
CAN.G79.7 Capsicum annuum HOM05D004765 ORTHO05D005900 7.4e-49 199.5 117 83.8
CAN.G79.6 Capsicum annuum HOM05D004765 ORTHO05D005900 7.0e-47 193.0 189 60.3
TAR633G0557 Trochodendron aralioides HOM05D004765 ORTHO05D005900 4.1e-31 140.6 85 85.9
Lj1C257T9 Lonicera japonica HOM05D004765 ORTHO05D030006 4.5e-22 110.5 76 72.4
SEGI_19690 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 5.5e-20 103.6 90 52.2
Sc12g0004650 Simmondsia chinensis HOM05D004765 ORTHO05D030006 4.7e-19 100.5 74 71.6
SEGI_24377 Sequoiadendron giganteum HOM05D004765 ORTHO05D030006 1.2e-17 95.9 79 62.0
QL04p027443 Quercus lobata HOM05D004765 ORTHO05D030006 2.0e-17 95.1 76 65.8
VMungo0251G2550 Vigna mungo HOM05D000107 ORTHO05D000001 5.6e-12 77.0 163 33.7
Os12g0509400 Oryza sativa ssp. japonica HOM05D004765 ORTHO05D296799 2.0e-09 68.6 49 63.3


User provided reference genes

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