Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0008177g0060 Nicotiana tabacum HOM05D005386 ORTHO05D006981 1.8e-162 575.9 292 100.0
Nitab4.5_0000731g0080 Nicotiana tabacum HOM05D005386 ORTHO05D006981 1.5e-161 572.8 292 99.3
Sopen11g027400 Solanum pennellii HOM05D005386 ORTHO05D006981 2.9e-136 488.8 318 80.2
Solyc11g068680.2 Solanum lycopersicum HOM05D005386 ORTHO05D006981 7.1e-135 484.2 318 79.2
Peaxi162Scf00224g00218 Petunia axillaris HOM05D005386 ORTHO05D006981 9.3e-135 483.8 269 90.3
Dinv08924 Davidia involucrata HOM05D005386 ORTHO05D006981 1.8e-101 373.2 290 67.9
GSVIVG01036080001 Vitis vinifera HOM05D005386 ORTHO05D006981 2.2e-99 366.3 308 62.7
CSS0011344 Camellia sinensis var. sinensis HOM05D005386 ORTHO05D006981 2.8e-99 365.9 304 63.5
CSS0028109 Camellia sinensis var. sinensis HOM05D005386 ORTHO05D006981 2.8e-99 365.9 304 63.5
Cc01_g08820 Coffea canephora HOM05D005386 ORTHO05D006981 1.8e-98 363.2 307 62.9
MSTRG.18771 Avicennia marina HOM05D005386 ORTHO05D006981 8.5e-96 354.4 297 62.0
TAR633G0448 Trochodendron aralioides HOM05D005386 ORTHO05D006981 1.9e-95 353.2 298 62.1
DCAR_022894 Daucus carota HOM05D005386 ORTHO05D006981 4.2e-95 352.1 280 65.0
Hma1.2p1_0319F.1_g123920 Hydrangea macrophylla HOM05D005386 ORTHO05D006981 3.6e-94 349.0 306 62.4
Lj1A257T31 Lonicera japonica HOM05D005386 ORTHO05D006981 4.7e-94 348.6 283 64.0
Ciclev10028837m.g Citrus clementina HOM05D005386 ORTHO05D006981 4.0e-93 345.5 315 58.4
Migut.D02364 Erythranthe guttata HOM05D005386 ORTHO05D006981 4.0e-93 345.5 290 63.8
Atru.chr3.3168 Acer truncatum HOM05D005386 ORTHO05D006981 4.4e-92 342.0 301 60.1
QL01p011847 Quercus lobata HOM05D005386 ORTHO05D006981 9.8e-92 340.9 310 60.6
TWI31G0673 Tripterygium wilfordii HOM05D005386 ORTHO05D006981 3.7e-91 339.0 301 58.5
CANSAT54G1533 Cannabis sativa HOM05D005386 ORTHO05D006981 2.4e-90 336.3 309 59.9
COL.COLO4_34005 Corchorus olitorius HOM05D005386 ORTHO05D006981 2.4e-90 336.3 310 60.6
Cfa009987 Carpinus fangiana HOM05D005386 ORTHO05D006981 7.0e-90 334.7 304 60.2
Haze_23346 Corylus avellana HOM05D005386 ORTHO05D006981 1.6e-89 333.6 311 59.2
CiPaw.14G098000 Carya illinoinensis HOM05D005386 ORTHO05D006981 4.5e-89 332.0 310 58.4
Gorai.009G084000 Gossypium raimondii HOM05D005386 ORTHO05D006981 4.5e-89 332.0 293 60.8
Manes.04G001400 Manihot esculenta HOM05D005386 ORTHO05D006981 4.5e-89 332.0 286 59.8
Gohir.D05G082400 Gossypium hirsutum HOM05D005386 ORTHO05D006981 1.0e-88 330.9 293 60.4
Prupe.6G135900 Prunus persica HOM05D005386 ORTHO05D006981 2.2e-88 329.7 300 58.0
MD03G1149900 Malus domestica HOM05D005386 ORTHO05D006981 6.5e-88 328.2 288 58.3
Lalb_Chr03g0028241 Lupinus albus HOM05D005386 ORTHO05D006981 2.5e-87 326.2 304 58.6
Eucgr.J00523 Eucalyptus grandis HOM05D005386 ORTHO05D006981 1.2e-86 323.9 309 55.3
Gohir.A05G079500 Gossypium hirsutum HOM05D005386 ORTHO05D006981 1.2e-86 323.9 293 59.7
Glyma.11G181300 Glycine max HOM05D005386 ORTHO05D006981 2.7e-86 322.8 311 56.3
PSO339G6531 Papaver somniferum HOM05D005386 ORTHO05D006981 3.6e-86 322.4 281 59.1
Rhsim01G0203700 Rhododendron simsii HOM05D005386 ORTHO05D006981 1.0e-85 320.9 304 57.9
RcHm_v2.0_Chr5g0045261 Rosa chinensis HOM05D005386 ORTHO05D006981 1.4e-85 320.5 292 57.9
Nn7g37254 Nelumbo nucifera HOM05D005386 ORTHO05D006981 2.3e-85 319.7 306 54.9
EL10Ac9g22916 Beta vulgaris HOM05D005386 ORTHO05D006981 5.2e-85 318.5 300 55.0
Potri.009G160500 Populus trichocarpa HOM05D005386 ORTHO05D006981 6.8e-85 318.2 311 56.9
Ca_19443_v3 Cicer arietinum L. HOM05D005386 ORTHO05D006981 1.2e-84 317.4 299 58.2
Duzib168G0172 Durio zibethinus HOM05D005386 ORTHO05D006981 2.6e-84 316.2 304 56.9
THA.LOC104810925 Tarenaya hassleriana HOM05D005386 ORTHO05D006981 1.3e-83 313.9 293 55.3
vmacro14339 Vaccinium macrocarpon HOM05D005386 ORTHO05D006981 1.3e-83 313.9 344 51.7
Duzib170G0830 Durio zibethinus HOM05D005386 ORTHO05D006981 1.7e-83 313.5 255 64.7
AL6G33360 Arabidopsis lyrata HOM05D005386 ORTHO05D006981 2.2e-83 313.2 291 56.4
Carub.0006s2008 Capsella rubella HOM05D005386 ORTHO05D006981 2.2e-83 313.2 308 54.5
AT5G22340 Arabidopsis thaliana HOM05D005386 ORTHO05D006981 2.8e-83 312.8 298 55.0
PSO384G1357 Papaver somniferum HOM05D005386 ORTHO05D006981 2.8e-83 312.8 290 56.9
Sp6g22900 Schrenkiella parvula HOM05D005386 ORTHO05D006981 2.8e-83 312.8 296 56.1
BraA03t10382Z Brassica rapa HOM05D005386 ORTHO05D006981 3.7e-83 312.4 301 55.8
ECA238G0234 Erigeron canadensis HOM05D005386 ORTHO05D006981 3.7e-83 312.4 261 60.2
A03p10700 Brassica napus HOM05D005386 ORTHO05D006981 4.9e-83 312.0 273 58.6
FvH4_2g14080 Fragaria vesca HOM05D005386 ORTHO05D006981 4.9e-83 312.0 295 56.6
Thhalv10014124m.g Eutrema salsugineum HOM05D005386 ORTHO05D006981 2.4e-82 309.7 297 55.2
Psat7g187240 Pisum sativum HOM05D005386 ORTHO05D006981 2.4e-82 309.7 305 55.1
TPR.G17201 Trifolium pratense HOM05D005386 ORTHO05D006981 2.4e-82 309.7 291 58.1
Sc06g0008690 Simmondsia chinensis HOM05D005386 ORTHO05D006981 3.1e-82 309.3 301 57.1
BolC3t13704H Brassica oleracea HOM05D005386 ORTHO05D006981 4.1e-82 308.9 298 55.7
Lj3g0020097 Lotus japonicus HOM05D005386 ORTHO05D006981 4.1e-82 308.9 301 56.1
SGA_v2.0_scaffold7G04001 Striga asiatica HOM05D005386 ORTHO05D006981 4.1e-82 308.9 304 57.2
ClCG01G011810 Citrullus lanatus HOM05D005386 ORTHO05D006981 1.6e-81 307.0 308 54.9
Lsat_1_v5_gn_2_3840 Lactuca sativa HOM05D005386 ORTHO05D006981 2.0e-81 306.6 271 57.2
C03p12310 Brassica napus HOM05D005386 ORTHO05D006981 2.7e-81 306.2 298 55.0
CsaV3_1G015030 Cucumis sativus L. HOM05D005386 ORTHO05D006981 5.0e-80 302.0 300 54.3
Sed0024067 Sechium edule HOM05D005386 ORTHO05D006981 1.9e-79 300.1 303 54.8
arahy.Tifrunner.gnm1.ann1.E6G7P2 Arachis hypogaea HOM05D005386 ORTHO05D006981 2.5e-79 299.7 278 55.8
ATR0307G012 Amborella trichopoda HOM05D005386 ORTHO05D006981 7.3e-79 298.1 280 55.4
HanXRQChr06g0183931 Helianthus annuus HOM05D005386 ORTHO05D006981 7.3e-79 298.1 257 59.9
Actinidia37072 Actinidia chinensis HOM05D005386 ORTHO05D006981 1.6e-78 297.0 281 55.9
Glyma.12G091900 Glycine max HOM05D005386 ORTHO05D006981 6.1e-78 295.0 313 54.3
MBI19_g34002_MAGBIO Magnolia biondii HOM05D005386 ORTHO05D006981 3.0e-77 292.7 305 54.1
unitig_736.g22394 Utricularia gibba HOM05D005386 ORTHO05D006981 1.7e-75 287.0 241 61.0
Medtr4g052500 Medicago truncatula HOM05D005386 ORTHO05D006981 3.2e-74 282.7 291 54.6
Ah.01g001670 Amaranthus hybridus HOM05D005386 ORTHO05D006981 1.7e-72 276.9 279 53.8
FAN20G2771 Fragaria x ananassa HOM05D005386 ORTHO05D006981 1.9e-71 273.5 311 49.5
BcaB01g04714 Brassica carinata HOM05D005386 ORTHO05D006981 9.5e-71 271.2 300 50.3
PGR119G1266 Punica granatum HOM05D005386 ORTHO05D006981 1.0e-69 267.7 261 56.7
SEGI_27763 Sequoiadendron giganteum HOM05D005386 ORTHO05D006981 1.0e-69 267.7 275 50.2
Hund18776 Selenicereus undatus HOM05D005386 ORTHO05D006981 2.3e-69 266.5 407 42.0
Aqoxy1G00008 Aquilegia oxysepala HOM05D005386 ORTHO05D006981 4.0e-69 265.8 295 49.2
Os03g0322600 Oryza sativa ssp. japonica HOM05D005386 ORTHO05D006981 4.0e-69 265.8 294 48.0
Oeu014472.1 Olea europaea HOM05D005386 ORTHO05D006981 2.2e-67 260.0 161 79.5
CDE08G0019 Ceratophyllum demersum HOM05D005386 ORTHO05D006981 4.9e-67 258.8 248 53.2
BcaC01g06587 Brassica carinata HOM05D005386 ORTHO05D006981 4.6e-65 252.3 315 46.3
MELO3C025590.2 Cucumis melo HOM05D005386 ORTHO05D006981 8.6e-64 248.1 271 52.0
Zm00001eb395560 Zea mays HOM05D005386 ORTHO05D006981 1.1e-63 247.7 268 47.4
arahy.Tifrunner.gnm1.ann1.PADK5G Arachis hypogaea HOM05D005386 ORTHO05D006981 1.9e-63 246.9 278 48.2
HPP92_001703 Vanilla planifolia HOM05D005386 ORTHO05D006981 6.2e-62 241.9 297 46.8
Zm00001eb015340 Zea mays HOM05D005386 ORTHO05D006981 1.2e-60 237.7 203 55.7
FAN24G0713 Fragaria x ananassa HOM05D005386 ORTHO05D006981 9.8e-60 234.6 284 49.6
AUR62015198 Chenopodium quinoa HOM05D005386 ORTHO05D006981 9.2e-58 228.0 274 48.5
AUR62017661 Chenopodium quinoa HOM05D005386 ORTHO05D006981 4.6e-57 225.7 279 47.7
Cpa.g.sc195.24 Carica papaya HOM05D005386 ORTHO05D006981 1.7e-56 223.8 153 74.5
Hma1.2p1_0319F.1_g123910 Hydrangea macrophylla HOM05D005386 ORTHO05D006981 2.3e-56 223.4 152 76.3
Zm00001eb285540 Zea mays HOM05D005386 ORTHO05D006981 3.0e-56 223.0 245 46.9
AUR62014970 Chenopodium quinoa HOM05D005386 ORTHO05D006981 1.7e-51 207.2 256 48.4
BcaC01g06590 Brassica carinata HOM05D005386 ORTHO05D006981 5.4e-50 202.2 231 48.9
Mapoly0094s0013 Marchantia polymorpha HOM05D005386 ORTHO05D006981 1.7e-48 197.2 292 41.4
SalBow6G0611 Salvia bowleyana HOM05D005386 ORTHO05D006981 2.3e-48 196.8 257 47.5
AagrBONN_evm.TU.Sc2ySwM_228.4159 Anthoceros agrestis HOM05D005386 ORTHO05D006981 5.6e-47 192.2 289 38.8
Phvul.011G096200 Phaseolus vulgaris HOM05D005386 ORTHO05D006981 7.3e-47 191.8 219 49.8
FAN15G3687 Fragaria x ananassa HOM05D005386 ORTHO05D006981 1.8e-45 187.2 131 71.0
Aa31LG1G13200 Aethionema arabicum HOM05D005386 ORTHO05D006981 5.2e-45 185.7 217 51.2
SMO338G0026 Selaginella moellendorffii HOM05D005386 ORTHO05D006981 5.1e-40 169.1 211 46.0
SMO140G0002 Selaginella moellendorffii HOM05D005386 ORTHO05D006981 6.2e-38 162.2 276 37.7
Ciclev10029637m.g Citrus clementina HOM05D005386 ORTHO05D006981 3.1e-37 159.8 105 74.3
TAR633G2192 Trochodendron aralioides HOM05D005386 ORTHO05D006981 1.5e-36 157.5 142 57.7
Pp3c20_23100 Physcomitrium patens HOM05D005386 ORTHO05D006981 5.8e-36 155.6 191 42.4
Ciclev10029895m.g Citrus clementina HOM05D005386 ORTHO05D006981 5.1e-32 142.5 105 68.6
VMungo1127G0965 Vigna mungo HOM05D005386 ORTHO05D006981 4.3e-31 139.4 148 51.4
AUR62043809 Chenopodium quinoa HOM05D004271 ORTHO05D006011 2.1e-30 137.1 139 56.1
FvH4_2g10370 Fragaria vesca HOM05D005386 ORTHO05D006981 9.9e-28 128.3 131 54.2
Aa31LG1G13190 Aethionema arabicum HOM05D005386 ORTHO05D006981 2.2e-27 127.1 87 67.8
VMungo1127G1152 Vigna mungo HOM05D005386 ORTHO05D006981 2.2e-27 127.1 89 71.9
arahy.Tifrunner.gnm1.ann1.M18R9V Arachis hypogaea HOM05D005386 ORTHO05D006981 7.9e-25 118.6 107 59.8
Thecc.09G278700 Theobroma cacao HOM05D005386 ORTHO05D006981 1.8e-21 107.5 176 42.0
CARHR191200 Cardamine hirsuta HOM05D005386 ORTHO05D006981 4.9e-19 99.4 143 40.6
FAN24G3375 Fragaria x ananassa HOM05D005386 ORTHO05D006981 9.3e-18 95.1 140 40.7
arahy.Tifrunner.gnm1.ann1.XDN0DP Arachis hypogaea HOM05D005386 ORTHO05D006981 2.5e-15 87.0 72 62.5
arahy.Tifrunner.gnm1.ann1.J76LRM Arachis hypogaea HOM05D005386 ORTHO05D006981 5.3e-13 79.3 83 54.2
arahy.Tifrunner.gnm1.ann1.TQJ2IB Arachis hypogaea HOM05D005386 ORTHO05D006981 5.0e-11 72.8 82 52.4
Hma1.2p1_0319F.1_g123930 Hydrangea macrophylla HOM05D005386 ORTHO05D006981 2.5e-10 70.5 87 46.0
AagrBONN_evm.TU.Sc2ySwM_228.3020 Anthoceros agrestis HOM05D006699 ORTHO05D008399 9.3e-10 68.6 160 29.4
Cpa.g.sc195.25 Carica papaya HOM05D005386 ORTHO05D006981 1.9e-07 60.8 51 54.9
arahy.Tifrunner.gnm1.ann1.CXSI0G Arachis hypogaea HOM05D000290 ORTHO05D002418 9.7e-07 58.5 56 53.6
MD09G1069600 Malus domestica HOM05D005386 ORTHO05D006981 2.2e-06 57.4 86 39.5
arahy.Tifrunner.gnm1.ann1.9EB2HI Arachis hypogaea HOM05D005386 ORTHO05D006981 2.8e-06 57.0 68 54.4
Pp3c8_13580 Physcomitrium patens HOM05D006699 ORTHO05D008399 3.7e-06 56.6 167 24.6
FvH4_2g10360 Fragaria vesca HOM05D005386 ORTHO05D006981 6.3e-06 55.8 46 56.5
C03p46250 Brassica napus HOM05D020391 ORTHO05D033527 8.2e-06 55.5 42 61.9
BolC8t50118H Brassica oleracea HOM05D020391 ORTHO05D033527 8.2e-06 55.5 42 61.9
CBR_g22416 Chara braunii HOM05D005386 ORTHO05D006981 8.2e-06 55.5 90 34.4


User provided reference genes

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