Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0008177g0030 Nicotiana tabacum HOM05D007535 ORTHO05D008520 1.8e-158 563.1 443 100.0
Nitab4.5_0000731g0020 Nicotiana tabacum HOM05D007535 ORTHO05D008520 5.9e-141 505.0 443 93.9
Sopen11g027410 Solanum pennellii HOM05D007535 ORTHO05D008520 1.9e-99 367.1 525 70.1
Solyc11g068690.2 Solanum lycopersicum HOM05D007535 ORTHO05D008520 1.1e-97 361.3 525 69.7
Peaxi162Scf00224g00216 Petunia axillaris HOM05D007535 ORTHO05D008520 1.3e-95 354.4 488 71.5
PGSC0003DMG400026347 Solanum tuberosum HOM05D007535 ORTHO05D008520 2.4e-94 350.1 525 69.7
CAN.G745.17 Capsicum annuum HOM05D007535 ORTHO05D008520 4.2e-86 322.8 497 70.4
Nitab4.5_0001640g0010 Nicotiana tabacum HOM05D007535 ORTHO05D008520 4.5e-64 249.6 240 63.8
vmacro03328 Vaccinium macrocarpon HOM05D007535 ORTHO05D008520 1.3e-47 194.9 474 43.0
Thecc.09G278200 Theobroma cacao HOM05D007535 ORTHO05D008520 1.7e-47 194.5 500 48.0
Prupe.6G137100 Prunus persica HOM05D007535 ORTHO05D008520 4.0e-44 183.3 492 54.1
Migut.N02473 Erythranthe guttata HOM05D007535 ORTHO05D008520 1.5e-43 181.4 442 60.9
Nn6g34805 Nelumbo nucifera HOM05D007535 ORTHO05D008520 7.4e-43 179.1 415 59.0
Actinidia07260 Actinidia chinensis HOM05D007535 ORTHO05D008520 1.7e-42 177.9 506 50.4
Cc00_g20950 Coffea canephora HOM05D007535 ORTHO05D008520 3.7e-42 176.8 456 57.0
Rhsim13G0113500 Rhododendron simsii HOM05D000001 ORTHO05D000003 2.6e-40 170.6 522 35.6
GSVIVG01036079001 Vitis vinifera HOM05D007535 ORTHO05D008520 1.7e-39 167.9 448 57.6
RcHm_v2.0_Chr5g0046091 Rosa chinensis HOM05D007535 ORTHO05D008520 2.2e-39 167.5 472 57.0
Psat5g257880 Pisum sativum HOM05D007535 ORTHO05D008520 6.5e-39 166.0 474 52.3
Gohir.D08G017000 Gossypium hirsutum HOM05D007535 ORTHO05D008520 1.5e-38 164.9 463 49.2
Hund18777 Selenicereus undatus HOM05D007535 ORTHO05D008520 2.5e-38 164.1 496 44.8
PSO384G1635 Papaver somniferum HOM05D007535 ORTHO05D008520 4.2e-38 163.3 457 51.2
Gorai.004G011300 Gossypium raimondii HOM05D007535 ORTHO05D008520 9.4e-38 162.2 479 48.4
Medtr2g086950 Medicago truncatula HOM05D007535 ORTHO05D008520 2.1e-37 161.0 477 53.7
Sed0017293 Sechium edule HOM05D007535 ORTHO05D008520 3.6e-37 160.2 468 54.3
SGA_v2.0_scaffold177G39436 Striga asiatica HOM05D007535 ORTHO05D008520 3.6e-37 160.2 476 48.7
Cpa.g.sc195.29 Carica papaya HOM05D007535 ORTHO05D008520 4.7e-37 159.8 259 41.7
DCAR_024892 Daucus carota HOM05D007535 ORTHO05D008520 6.1e-37 159.5 484 45.0
Manes.04G001100 Manihot esculenta HOM05D007535 ORTHO05D008520 1.4e-36 158.3 501 48.3
Hma1.2p1_2164F.1_g315730 Hydrangea macrophylla HOM05D007535 ORTHO05D008520 8.8e-36 155.6 291 38.5
PSO339G0294 Papaver somniferum HOM05D007535 ORTHO05D008520 8.8e-36 155.6 457 50.1
Gohir.A08G006800 Gossypium hirsutum HOM05D007535 ORTHO05D008520 1.2e-35 155.2 479 47.6
Hma1.2p1_2164F.1_g315740 Hydrangea macrophylla HOM05D007535 ORTHO05D008520 1.2e-35 155.2 290 38.3
TAR633G1755 Trochodendron aralioides HOM05D007535 ORTHO05D008520 4.4e-35 153.3 455 54.7
Lj2A969T70 Lonicera japonica HOM05D007535 ORTHO05D008520 1.3e-34 151.8 505 38.6
Eucgr.J00525 Eucalyptus grandis HOM05D007535 ORTHO05D008520 6.3e-34 149.4 443 55.8
Haze_23344 Corylus avellana HOM05D007535 ORTHO05D008520 8.3e-34 149.1 253 43.1
Atru.chr3.3166 Acer truncatum HOM05D007535 ORTHO05D008520 1.1e-33 148.7 422 57.6
Cfa009985 Carpinus fangiana HOM05D007535 ORTHO05D008520 1.8e-33 147.9 454 54.2
HanXRQChr14g0433121 Helianthus annuus HOM05D007535 ORTHO05D008520 2.4e-33 147.5 445 55.5
ClCG01G011770 Citrullus lanatus HOM05D007535 ORTHO05D008520 4.1e-33 146.7 484 52.9
Dinv08923 Davidia involucrata HOM05D007535 ORTHO05D008520 4.1e-33 146.7 468 39.3
EL10Ac7g16124 Beta vulgaris HOM05D007535 ORTHO05D008520 5.4e-33 146.4 473 44.2
unitig_27.g25117 Utricularia gibba HOM05D007535 ORTHO05D008520 5.4e-33 146.4 475 53.3
MD03G1150100 Malus domestica HOM05D007535 ORTHO05D008520 1.2e-32 145.2 491 51.5
ECA238G4833 Erigeron canadensis HOM05D007535 ORTHO05D008520 1.6e-32 144.8 445 45.8
MSTRG.12377 Avicennia marina HOM05D007535 ORTHO05D008520 2.0e-32 144.4 503 51.7
CSS0035480 Camellia sinensis var. sinensis HOM05D007535 ORTHO05D008520 3.5e-32 143.7 316 35.4
FAN25G3072 Fragaria x ananassa HOM05D007535 ORTHO05D008520 4.5e-32 143.3 472 54.2
FvH4_3g25730 Fragaria vesca HOM05D007535 ORTHO05D008520 2.2e-31 141.0 472 54.0
FAN21G0330 Fragaria x ananassa HOM05D007535 ORTHO05D008520 2.2e-31 141.0 478 44.8
FAN11G3206 Fragaria x ananassa HOM05D007535 ORTHO05D008520 5.5e-30 136.3 482 54.6
Lsat_1_v5_gn_2_34620 Lactuca sativa HOM05D007535 ORTHO05D008520 7.2e-30 136.0 308 62.3
Lalb_Chr24g0393491 Lupinus albus HOM05D007535 ORTHO05D008520 7.2e-30 136.0 254 37.4
Sabra04G0134300 Salix brachista HOM05D001716 ORTHO05D004234 9.4e-30 135.6 480 43.8
SalBow3G0383 Salvia bowleyana HOM05D007535 ORTHO05D008520 3.6e-29 133.7 477 53.0
Glyma.12G186700 Glycine max HOM05D007535 ORTHO05D008520 3.0e-28 130.6 476 51.1
arahy.Tifrunner.gnm1.ann1.TGP3GH Arachis hypogaea HOM05D007535 ORTHO05D008520 6.8e-28 129.4 490 43.3
Lj3g0000707 Lotus japonicus HOM05D007535 ORTHO05D008520 6.8e-28 129.4 483 45.3
Glyma.13G314800 Glycine max HOM05D007535 ORTHO05D008520 1.2e-27 128.6 459 53.2
Ciclev10029981m.g Citrus clementina HOM05D007535 ORTHO05D008520 2.6e-27 127.5 487 45.2
VMungo1080G1542 Vigna mungo HOM05D007535 ORTHO05D008520 5.7e-27 126.3 499 45.9
Ciclev10028368m.g Citrus clementina HOM05D007535 ORTHO05D008520 9.8e-27 125.6 475 53.1
TWI79G0866 Tripterygium wilfordii HOM05D007535 ORTHO05D008520 9.8e-27 125.6 482 51.0
Aqoxy4G02717 Aquilegia oxysepala HOM05D007535 ORTHO05D008520 2.8e-26 124.0 460 37.6
Potri.004G199200 Populus trichocarpa HOM05D007535 ORTHO05D008520 6.3e-26 122.9 480 51.0
AUR62001527 Chenopodium quinoa HOM05D007535 ORTHO05D008520 1.1e-25 122.1 510 41.8
CsaV3_1G015090 Cucumis sativus L. HOM05D007535 ORTHO05D008520 1.1e-25 122.1 487 49.7
Sc12g0004670 Simmondsia chinensis HOM05D007535 ORTHO05D008520 2.4e-25 120.9 472 43.4
TPR.G4567 Trifolium pratense HOM05D007535 ORTHO05D008520 7.0e-25 119.4 471 49.5
MBI17_g01489_MAGBIO Magnolia biondii HOM05D007535 ORTHO05D008520 1.2e-24 118.6 244 37.3
Ca_01647_v3 Cicer arietinum L. HOM05D002184 ORTHO05D002379 4.5e-24 116.7 484 51.4
Sc12g0004620 Simmondsia chinensis HOM05D007535 ORTHO05D008520 1.0e-23 115.5 467 40.0
MELO3C025588.2 Cucumis melo HOM05D007535 ORTHO05D008520 1.3e-23 115.2 285 35.1
PGR119G1786 Punica granatum HOM05D007535 ORTHO05D008520 1.7e-23 114.8 454 53.3
HPP92_011495 Vanilla planifolia HOM05D007535 ORTHO05D008520 1.1e-22 112.1 250 38.0
arahy.Tifrunner.gnm1.ann1.ETK20Z Arachis hypogaea HOM05D007535 ORTHO05D008520 5.6e-22 109.8 476 49.8
THA.LOC104810927 Tarenaya hassleriana HOM05D007535 ORTHO05D008520 5.6e-22 109.8 464 50.9
Duzib150G0908 Durio zibethinus HOM05D007535 ORTHO05D008520 9.5e-22 109.0 167 43.1
Oeu024409.1 Olea europaea HOM05D007535 ORTHO05D008520 9.5e-22 109.0 63 84.1
Os01g0966400 Oryza sativa ssp. japonica HOM05D007535 ORTHO05D008520 7.5e-19 99.4 258 35.3
CDE02G4009 Ceratophyllum demersum HOM05D007535 ORTHO05D008520 2.2e-18 97.8 473 43.3
Ciclev10028316m.g Citrus clementina HOM05D007535 ORTHO05D008520 2.9e-18 97.4 490 49.0
Hma1.2p1_2164F.1_g315720 Hydrangea macrophylla HOM05D007535 ORTHO05D008520 2.4e-17 94.4 61 75.4
QL01p011831 Quercus lobata HOM05D007535 ORTHO05D008520 2.0e-16 91.3 346 28.0
Actinidia24230 Actinidia chinensis HOM05D007535 ORTHO05D008520 2.7e-16 90.9 241 54.4
AUR62020256 Chenopodium quinoa HOM05D007535 ORTHO05D008520 3.5e-16 90.5 273 54.2
Zm00001eb140080 Zea mays HOM05D007535 ORTHO05D008520 4.6e-16 90.1 473 48.8
CANSAT54G2250 Cannabis sativa HOM05D007535 ORTHO05D008520 1.0e-15 89.0 479 49.9
ATR0081G029 Amborella trichopoda HOM05D007535 ORTHO05D008520 2.3e-15 87.8 250 30.0
FAN16G1906 Fragaria x ananassa HOM05D007535 ORTHO05D008520 5.6e-14 83.2 277 30.0
CiPaw.14G097800 Carya illinoinensis HOM05D007535 ORTHO05D008520 7.3e-14 82.8 450 50.0
FAN25G1573 Fragaria x ananassa HOM05D007535 ORTHO05D008520 9.5e-14 82.4 359 59.6
AL6G33340 Arabidopsis lyrata HOM05D012474 ORTHO05D008520 4.7e-13 80.1 279 67.4
Carub.0006s2006 Capsella rubella HOM05D012474 ORTHO05D008520 4.0e-12 77.0 449 48.8
Aa31LG1G13230 Aethionema arabicum HOM05D012474 ORTHO05D008520 5.2e-12 76.6 455 49.0
CARHR191220 Cardamine hirsuta HOM05D012474 ORTHO05D008520 8.9e-12 75.9 459 48.8
BolC9t58300H Brassica oleracea HOM05D012474 ORTHO05D008520 9.8e-11 72.4 255 29.8
BcaB08g36440 Brassica carinata HOM05D012474 ORTHO05D008520 2.9e-10 70.9 242 28.5
C09p54250 Brassica napus HOM05D012474 ORTHO05D008520 3.7e-10 70.5 252 29.8
Sp6g22920 Schrenkiella parvula HOM05D012474 ORTHO05D008520 3.7e-10 70.5 258 31.0
Actinidia24231 Actinidia chinensis HOM05D007535 ORTHO05D008520 9.2e-09 65.9 171 33.9
CSS0011293 Camellia sinensis var. sinensis HOM05D007535 ORTHO05D008520 1.2e-08 65.5 42 78.6
C09p54330 Brassica napus HOM05D012474 ORTHO05D008520 1.7e-07 61.6 235 28.5
CANSAT78G2361 Cannabis sativa HOM05D000107 ORTHO05D000062 2.3e-07 61.2 44 65.9
BcaC04g19565 Brassica carinata HOM05D012474 ORTHO05D008520 5.0e-07 60.1 251 28.3
Phvul.005G122000 Phaseolus vulgaris HOM05D007535 ORTHO05D008520 5.0e-07 60.1 481 44.7
MD11G1168900 Malus domestica HOM05D007535 ORTHO05D008520 6.6e-07 59.7 57 52.6
CSS0011895 Camellia sinensis var. sinensis HOM05D007535 ORTHO05D008520 1.1e-06 58.9 39 76.9
A10p18500 Brassica napus HOM05D012474 ORTHO05D008520 1.5e-06 58.5 245 29.4
BraA10t43930Z Brassica rapa HOM05D012474 ORTHO05D008520 1.5e-06 58.5 243 29.2
AT5G22320 Arabidopsis thaliana HOM05D012474 ORTHO05D008520 9.5e-06 55.8 46 56.5


User provided reference genes

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