Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0008132g0010 Nicotiana tabacum HOM05D006783 ORTHO05D008330 1.2e-266 922.5 449 100.0
Nitab4.5_0000856g0080 Nicotiana tabacum HOM05D006783 ORTHO05D008330 7.1e-259 896.7 447 97.1
Sopen11g001950 Solanum pennellii HOM05D006783 ORTHO05D008330 3.4e-221 771.5 450 83.8
CAN.G582.7 Capsicum annuum HOM05D006783 ORTHO05D008330 9.4e-219 763.5 449 85.1
Solyc11g006010.3 Solanum lycopersicum HOM05D006783 ORTHO05D008330 3.6e-218 761.5 450 82.9
Peaxi162Scf00183g00220 Petunia axillaris HOM05D006783 ORTHO05D008330 1.1e-211 740.0 449 80.8
Cc07_g18470 Coffea canephora HOM05D006783 ORTHO05D008330 3.9e-140 502.3 450 57.6
Oeu004243.1 Olea europaea HOM05D006783 ORTHO05D008330 1.1e-139 500.7 455 59.1
QL10p043377 Quercus lobata HOM05D006783 ORTHO05D008330 2.3e-132 476.5 450 55.6
CiPaw.03G122200 Carya illinoinensis HOM05D006783 ORTHO05D008330 9.6e-131 471.1 451 54.5
Dinv24358 Davidia involucrata HOM05D006783 ORTHO05D008330 9.0e-129 464.5 450 55.1
Lj4A842G81 Lonicera japonica HOM05D006783 ORTHO05D008330 1.7e-127 460.3 470 52.3
TAR381G1481 Trochodendron aralioides HOM05D006783 ORTHO05D008330 2.2e-127 459.9 453 54.3
Migut.H00705 Erythranthe guttata HOM05D006783 ORTHO05D008330 1.1e-126 457.6 455 55.4
MSTRG.2651 Avicennia marina HOM05D006783 ORTHO05D008330 2.5e-126 456.4 452 52.9
TWI79G1521 Tripterygium wilfordii HOM05D006783 ORTHO05D008330 2.5e-126 456.4 453 53.0
Haze_25231 Corylus avellana HOM05D006783 ORTHO05D008330 3.2e-126 456.1 490 50.4
FAN19G0409 Fragaria x ananassa HOM05D006783 ORTHO05D008330 8.7e-124 448.0 483 50.7
Potri.007G106700 Populus trichocarpa HOM05D006783 ORTHO05D008330 1.9e-123 446.8 456 51.8
FvH4_1g24320 Fragaria vesca HOM05D006783 ORTHO05D008330 2.5e-123 446.4 483 50.5
Manes.12G155400 Manihot esculenta HOM05D006783 ORTHO05D008330 7.4e-123 444.9 450 51.6
Hma1.2p1_0050F.1_g029140 Hydrangea macrophylla HOM05D006783 ORTHO05D008330 8.2e-122 441.4 458 50.4
Sabra07G0087300 Salix brachista HOM05D006783 ORTHO05D008330 1.1e-121 441.0 461 51.6
Thecc.01G131600 Theobroma cacao HOM05D006783 ORTHO05D008330 3.1e-121 439.5 498 49.4
Rhsim10G0135000 Rhododendron simsii HOM05D006783 ORTHO05D008330 4.0e-121 439.1 477 50.9
Cpa.g.sc42.156 Carica papaya HOM05D006783 ORTHO05D008330 6.9e-121 438.3 450 51.1
vmacro12805 Vaccinium macrocarpon HOM05D006783 ORTHO05D008330 6.9e-121 438.3 480 49.6
FAN26G1994 Fragaria x ananassa HOM05D006783 ORTHO05D008330 3.4e-120 436.0 484 50.0
Medtr3g096240 Medicago truncatula HOM05D006783 ORTHO05D008330 3.4e-120 436.0 447 50.8
Actinidia06622 Actinidia chinensis HOM05D006783 ORTHO05D008330 5.8e-120 435.3 496 48.6
GSVIVG01026486001 Vitis vinifera HOM05D006783 ORTHO05D008330 1.0e-119 434.5 447 51.0
TPR.G20746 Trifolium pratense HOM05D006783 ORTHO05D008330 4.9e-119 432.2 458 50.4
Lalb_Chr11g0068431 Lupinus albus HOM05D006783 ORTHO05D008330 1.4e-118 430.6 451 52.5
Glyma.06G153300 Glycine max HOM05D006783 ORTHO05D008330 2.5e-118 429.9 454 51.3
Duzib264G0694 Durio zibethinus HOM05D006783 ORTHO05D008330 3.2e-118 429.5 497 47.7
Ciclev10000624m.g Citrus clementina HOM05D006783 ORTHO05D008330 7.1e-118 428.3 512 46.3
PSO017G1517 Papaver somniferum HOM05D006783 ORTHO05D008330 7.9e-117 424.9 457 49.2
PSO170G6811 Papaver somniferum HOM05D006783 ORTHO05D008330 7.9e-117 424.9 456 49.6
RcHm_v2.0_Chr2g0120831 Rosa chinensis HOM05D006783 ORTHO05D008330 7.9e-117 424.9 485 48.5
Eucgr.H04963 Eucalyptus grandis HOM05D006783 ORTHO05D008330 1.0e-116 424.5 458 51.1
Sp1g16990 Schrenkiella parvula HOM05D006783 ORTHO05D008330 1.0e-116 424.5 456 49.6
Lj1g0010780 Lotus japonicus HOM05D006783 ORTHO05D008330 2.3e-116 423.3 469 49.5
EL10Ac6g15310 Beta vulgaris HOM05D006783 ORTHO05D008330 3.0e-116 422.9 458 48.5
BcaB03g14467 Brassica carinata HOM05D006783 ORTHO05D008330 2.5e-115 419.9 460 50.0
DCAR_020443 Daucus carota HOM05D006783 ORTHO05D008330 7.4e-115 418.3 490 48.2
Thhalv10007278m.g Eutrema salsugineum HOM05D006783 ORTHO05D008330 1.3e-114 417.5 456 50.0
HanXRQChr06g0180641 Helianthus annuus HOM05D006783 ORTHO05D008330 1.6e-114 417.2 454 50.0
Atru.chr4.894 Acer truncatum HOM05D006783 ORTHO05D008330 2.2e-114 416.8 518 46.3
Gohir.A05G385200 Gossypium hirsutum HOM05D006783 ORTHO05D008330 1.8e-113 413.7 498 45.8
BolC8t51838H Brassica oleracea HOM05D006783 ORTHO05D008330 6.9e-113 411.8 456 48.9
Psat5g062360 Pisum sativum HOM05D006783 ORTHO05D008330 6.9e-113 411.8 449 49.2
AL1G31600 Arabidopsis lyrata HOM05D006783 ORTHO05D008330 9.0e-113 411.4 457 50.1
ECA246G4425 Erigeron canadensis HOM05D006783 ORTHO05D008330 9.0e-113 411.4 457 49.0
THA.LOC104808567 Tarenaya hassleriana HOM05D006783 ORTHO05D008330 1.5e-112 410.6 462 48.9
Aqoxy5G02235 Aquilegia oxysepala HOM05D006783 ORTHO05D008330 2.6e-112 409.8 456 48.0
BcaC07g41275 Brassica carinata HOM05D006783 ORTHO05D008330 5.9e-112 408.7 457 48.6
C08p42820 Brassica napus HOM05D006783 ORTHO05D008330 5.9e-112 408.7 457 48.6
BraA09t41331Z Brassica rapa HOM05D006783 ORTHO05D008330 5.9e-112 408.7 455 47.7
Hund25583 Selenicereus undatus HOM05D006783 ORTHO05D008330 1.3e-111 407.5 472 49.2
A09p59540 Brassica napus HOM05D006783 ORTHO05D008330 2.2e-111 406.8 455 47.7
Carub.0001s1866 Capsella rubella HOM05D006783 ORTHO05D008330 2.2e-111 406.8 458 48.9
Ah.03g147820 Amaranthus hybridus HOM05D006783 ORTHO05D008330 2.9e-111 406.4 496 45.0
CANSAT01G2909 Cannabis sativa HOM05D006783 ORTHO05D008330 2.9e-111 406.4 476 47.1
AUR62017874 Chenopodium quinoa HOM05D006783 ORTHO05D008330 1.9e-110 403.7 534 42.7
Lsat_1_v5_gn_2_37361 Lactuca sativa HOM05D006783 ORTHO05D008330 1.2e-109 401.0 448 48.2
AUR62003560 Chenopodium quinoa HOM05D006783 ORTHO05D008330 2.7e-109 399.8 535 43.2
arahy.Tifrunner.gnm1.ann1.GA3CQQ Arachis hypogaea HOM05D006783 ORTHO05D008330 3.6e-109 399.4 534 43.1
Gorai.012G034600 Gossypium raimondii HOM05D006783 ORTHO05D008330 7.9e-109 398.3 401 51.9
Ca_16945_v3 Cicer arietinum L. HOM05D006783 ORTHO05D008330 1.4e-108 397.5 410 51.0
AT1G19025 Arabidopsis thaliana HOM05D006783 ORTHO05D008330 3.0e-108 396.4 458 47.8
arahy.Tifrunner.gnm1.ann1.NV8W9T Arachis hypogaea HOM05D006783 ORTHO05D008330 3.3e-107 392.9 338 55.9
Aa31LG7G3800 Aethionema arabicum HOM05D006783 ORTHO05D008330 9.7e-107 391.3 455 46.6
CARHR019650 Cardamine hirsuta HOM05D006783 ORTHO05D008330 1.3e-106 391.0 457 46.2
Gohir.D04G022400 Gossypium hirsutum HOM05D006783 ORTHO05D008330 3.1e-105 386.3 401 50.4
Nn5g28554 Nelumbo nucifera HOM05D006783 ORTHO05D008330 1.9e-102 377.1 350 53.4
ClCG02G000310 Citrullus lanatus HOM05D006783 ORTHO05D008330 4.7e-101 372.5 528 40.9
CsaV3_2G019520 Cucumis sativus L. HOM05D006783 ORTHO05D008330 1.1e-99 367.9 524 41.0
Sed0010062 Sechium edule HOM05D006783 ORTHO05D008330 1.5e-99 367.5 532 41.4
MELO3C023221.2 Cucumis melo HOM05D006783 ORTHO05D008330 2.0e-99 367.1 528 41.3
SHI11470 Sapria himalayana HOM05D006783 ORTHO05D008330 3.3e-99 366.3 452 45.8
CDE06G2516 Ceratophyllum demersum HOM05D006783 ORTHO05D008330 1.3e-98 364.4 448 46.4
Dinv07124 Davidia involucrata HOM05D006783 ORTHO05D008330 1.8e-92 344.0 395 49.6
Ca_16964_v3 Cicer arietinum L. HOM05D006783 ORTHO05D008330 2.0e-91 340.5 410 46.6
ATR1136G115 Amborella trichopoda HOM05D006783 ORTHO05D008330 8.2e-90 335.1 543 37.2
COL.COLO4_35737 Corchorus olitorius HOM05D006783 ORTHO05D008330 5.3e-89 332.4 436 45.6
Zm00001eb145740 Zea mays HOM05D006783 ORTHO05D008330 1.7e-87 327.4 524 38.7
Os01g0881400 Oryza sativa ssp. japonica HOM05D006783 ORTHO05D008330 3.2e-86 323.2 581 37.0
QL10p029699 Quercus lobata HOM05D002292 ORTHO05D008330 3.0e-84 316.6 396 46.2
MBI06_g29674_MAGBIO Magnolia biondii HOM05D006783 ORTHO05D008330 1.8e-81 307.4 252 58.7
SEGI_38469 Sequoiadendron giganteum HOM05D006783 ORTHO05D008330 3.5e-80 303.1 527 35.3
Zm00001eb174320 Zea mays HOM05D006783 ORTHO05D008330 5.5e-78 295.8 559 35.8
BcaB03g12941 Brassica carinata HOM05D006783 ORTHO05D008330 5.9e-72 275.8 365 45.5
Os08g0107600 Oryza sativa ssp. japonica HOM05D006783 ORTHO05D008330 8.6e-71 271.9 406 40.4
TAR381G0047 Trochodendron aralioides HOM05D006783 ORTHO05D008330 1.2e-69 268.1 188 66.0
unitig_0.g1207 Utricularia gibba HOM05D006783 ORTHO05D008330 1.7e-66 257.7 497 36.4
Pp3c17_21070 Physcomitrium patens HOM05D006783 ORTHO05D008330 1.4e-57 228.0 249 46.2
TAR371G1287 Trochodendron aralioides HOM05D006783 ORTHO05D008330 3.0e-55 220.3 147 66.0
Zm00001eb290170 Zea mays HOM05D006783 ORTHO05D008330 5.8e-51 206.1 252 44.0
Psat7g194880 Pisum sativum HOM05D006783 ORTHO05D008330 1.0e-47 195.3 207 49.3
Psat3g153680 Pisum sativum HOM05D006783 ORTHO05D008330 7.3e-46 189.1 154 56.5
Zm00001eb092970 Zea mays HOM05D006783 ORTHO05D008330 3.1e-36 157.1 476 29.6
Psat0s4692g0040 Pisum sativum HOM05D006783 ORTHO05D008330 4.4e-35 153.3 113 62.8
CBR_g9109 Chara braunii HOM05D006783 ORTHO05D008330 6.6e-31 139.4 339 28.9
HPP92_013423 Vanilla planifolia HOM05D006783 ORTHO05D008330 5.8e-27 126.3 190 40.5
Gohir.D04G022272 Gossypium hirsutum HOM05D006783 ORTHO05D008330 4.8e-21 106.7 70 64.3
Gohir.D04G022300 Gossypium hirsutum HOM05D006783 ORTHO05D008330 3.1e-20 104.0 70 62.9
Gorai.012G034900 Gossypium raimondii HOM05D006783 ORTHO05D008330 4.0e-20 103.6 70 62.9
HPP92_013424 Vanilla planifolia HOM05D006783 ORTHO05D008330 7.9e-16 89.4 69 56.5
TAR381G1530 Trochodendron aralioides HOM05D006783 ORTHO05D008330 8.7e-15 85.9 147 38.1
COL.COLO4_13062 Corchorus olitorius HOM05D007319 ORTHO05D008576 2.2e-10 71.2 124 34.7
Medtr1g052840 Medicago truncatula HOM05D007319 ORTHO05D008576 2.2e-10 71.2 135 31.9
ECA246G0686 Erigeron canadensis HOM05D000038 ORTHO05D000689 6.5e-10 69.7 124 31.5
Sc23g0005010 Simmondsia chinensis HOM05D007319 ORTHO05D008576 6.5e-10 69.7 246 24.0
Zm00001eb286580 Zea mays HOM05D006783 ORTHO05D008330 6.5e-10 69.7 82 50.0
Ah.01g014450 Amaranthus hybridus HOM05D007319 ORTHO05D008576 1.1e-09 68.9 261 23.8
Ca_08326_v3 Cicer arietinum L. HOM05D007319 ORTHO05D008576 4.2e-09 67.0 134 29.1
CSS0043355 Camellia sinensis var. sinensis HOM05D007319 ORTHO05D008576 5.5e-09 66.6 128 32.0
CSS0048621 Camellia sinensis var. sinensis HOM05D007319 ORTHO05D008576 5.5e-09 66.6 128 32.0
AL1G40820 Arabidopsis lyrata HOM05D007319 ORTHO05D008576 7.1e-09 66.2 134 32.1
AT1G27410 Arabidopsis thaliana HOM05D007319 ORTHO05D008576 7.1e-09 66.2 134 32.1
Manes.13G087700 Manihot esculenta HOM05D007319 ORTHO05D008576 7.1e-09 66.2 123 33.3
Ah.01g005180 Amaranthus hybridus HOM05D007319 ORTHO05D008576 9.3e-09 65.9 130 32.3
arahy.Tifrunner.gnm1.ann1.74LKV9 Arachis hypogaea HOM05D007319 ORTHO05D008576 9.3e-09 65.9 108 34.3
Carub.0001s2595 Capsella rubella HOM05D007319 ORTHO05D008576 9.3e-09 65.9 134 31.3
MBI02_g03610_MAGBIO Magnolia biondii HOM05D007319 ORTHO05D008576 9.3e-09 65.9 125 33.6
Gohir.D11G230600 Gossypium hirsutum HOM05D007319 ORTHO05D008576 1.2e-08 65.5 134 31.3
Medtr0280s0030 Medicago truncatula HOM05D007319 ORTHO05D008576 1.2e-08 65.5 136 29.4
Hund01202 Selenicereus undatus HOM05D007319 ORTHO05D008576 1.2e-08 65.5 248 25.8
Gorai.003G066900 Gossypium raimondii HOM05D007319 ORTHO05D008576 1.6e-08 65.1 134 31.3
Lj1A744T30 Lonicera japonica HOM05D007319 ORTHO05D008576 1.6e-08 65.1 123 31.7
SalBow1G3919 Salvia bowleyana HOM05D007319 ORTHO05D008576 2.1e-08 64.7 252 24.6
Thecc.02G167300 Theobroma cacao HOM05D007319 ORTHO05D008576 2.1e-08 64.7 123 32.5
Eucgr.A01754 Eucalyptus grandis HOM05D007319 ORTHO05D008576 2.7e-08 64.3 123 30.1
Sabra13G0120700 Salix brachista HOM05D007319 ORTHO05D008576 2.7e-08 64.3 132 30.3
TWI18G1078 Tripterygium wilfordii HOM05D007319 ORTHO05D008576 2.7e-08 64.3 123 31.7
arahy.Tifrunner.gnm1.ann1.RET3PJ Arachis hypogaea HOM05D007319 ORTHO05D008576 3.5e-08 63.9 106 34.0
Cre01.g052950 Chlamydomonas reinhardtii HOM05D006783 ORTHO05D008330 3.5e-08 63.9 171 27.5
Duzib132G0482 Durio zibethinus HOM05D007319 ORTHO05D008576 3.5e-08 63.9 123 31.7
Atru.chr6.3094 Acer truncatum HOM05D007319 ORTHO05D008576 4.6e-08 63.5 123 31.7
ClCG02G001500 Citrullus lanatus HOM05D007319 ORTHO05D008576 4.6e-08 63.5 123 30.9
CSS0049465 Camellia sinensis var. sinensis HOM05D007319 ORTHO05D008576 6.0e-08 63.2 128 31.2
HanXRQChr17g0543141 Helianthus annuus HOM05D007319 ORTHO05D008576 6.0e-08 63.2 125 32.0
TAR626G1179 Trochodendron aralioides HOM05D007319 ORTHO05D008576 6.0e-08 63.2 125 33.6
Haze_13028 Corylus avellana HOM05D007319 ORTHO05D008576 7.9e-08 62.8 123 30.9
CsaV3_7G004000 Cucumis sativus L. HOM05D007319 ORTHO05D008576 7.9e-08 62.8 123 30.1
Migut.H01008 Erythranthe guttata HOM05D007319 ORTHO05D008576 7.9e-08 62.8 241 24.9
Lj3g0006033 Lotus japonicus HOM05D007319 ORTHO05D008576 7.9e-08 62.8 134 27.6
Lj3g0020364 Lotus japonicus HOM05D007319 ORTHO05D008576 7.9e-08 62.8 134 27.6
SalBow1G4158 Salvia bowleyana HOM05D007319 ORTHO05D008576 7.9e-08 62.8 239 24.3
SalBow1G6686 Salvia bowleyana HOM05D007319 ORTHO05D008576 7.9e-08 62.8 239 24.3
Sp3g33700 Schrenkiella parvula HOM05D007319 ORTHO05D008576 7.9e-08 62.8 136 32.4
EL10Ac9g20722 Beta vulgaris HOM05D007319 ORTHO05D008576 1.0e-07 62.4 134 31.3
CSS0021958 Camellia sinensis var. sinensis HOM05D007319 ORTHO05D008576 1.0e-07 62.4 113 31.9
Cfa014494 Carpinus fangiana HOM05D007319 ORTHO05D008576 1.0e-07 62.4 123 30.9
ATR1132G134 Amborella trichopoda HOM05D003350 ORTHO05D008576 1.3e-07 62.0 108 33.3
CiPaw.04G121400 Carya illinoinensis HOM05D007319 ORTHO05D008576 1.3e-07 62.0 123 31.7
Cc05_g05710 Coffea canephora HOM05D007319 ORTHO05D008576 1.3e-07 62.0 124 33.9
MELO3C018779.2 Cucumis melo HOM05D007319 ORTHO05D008576 1.3e-07 62.0 123 29.3
Atru.chr6.3563 Acer truncatum HOM05D007319 ORTHO05D008576 1.8e-07 61.6 108 33.3
vmacro09306 Vaccinium macrocarpon HOM05D007319 ORTHO05D008576 1.8e-07 61.6 128 29.7
Cpa.g.sc17.7 Carica papaya HOM05D007319 ORTHO05D008576 2.3e-07 61.2 134 31.3
CDE11G1185 Ceratophyllum demersum HOM05D003350 ORTHO05D008576 2.3e-07 61.2 108 33.3
DCAR_021209 Daucus carota HOM05D007319 ORTHO05D008576 2.3e-07 61.2 123 30.9
Lsat_1_v5_gn_3_41840 Lactuca sativa HOM05D007319 ORTHO05D008576 2.3e-07 61.2 134 31.3
Rhsim04G0059100 Rhododendron simsii HOM05D007319 ORTHO05D008576 2.3e-07 61.2 128 28.9
RhsimUnG0197400 Rhododendron simsii HOM05D007319 ORTHO05D008576 2.3e-07 61.2 128 28.9
Zm00001eb369790 Zea mays HOM05D007319 ORTHO05D008576 2.3e-07 61.2 123 31.7
EL10Ac2g04516 Beta vulgaris HOM05D001934 ORTHO05D002139 3.0e-07 60.8 247 23.5
AUR62025153 Chenopodium quinoa HOM05D007319 ORTHO05D008576 3.0e-07 60.8 134 29.9
AUR62033723 Chenopodium quinoa HOM05D007319 ORTHO05D008576 3.0e-07 60.8 134 29.9
MSTRG.14170 Avicennia marina HOM05D007319 ORTHO05D008576 3.9e-07 60.5 123 30.1
QL08p036137 Quercus lobata HOM05D007319 ORTHO05D008576 3.9e-07 60.5 124 32.3
Hma1.2p1_1090F.1_g255770 Hydrangea macrophylla HOM05D007319 ORTHO05D008576 6.7e-07 59.7 128 32.0
Hma1.2p1_3430F.1_g336010 Hydrangea macrophylla HOM05D007319 ORTHO05D008576 6.7e-07 59.7 128 32.0
Nn1g06835 Nelumbo nucifera HOM05D003350 ORTHO05D008576 6.7e-07 59.7 107 30.8
unitig_26.g9934 Utricularia gibba HOM05D002278 ORTHO05D008576 6.7e-07 59.7 125 30.4
Actinidia30494 Actinidia chinensis HOM05D007319 ORTHO05D008576 1.1e-06 58.9 128 28.9
BcaB03g16844 Brassica carinata HOM05D007319 ORTHO05D008576 1.1e-06 58.9 137 29.9
GSVIVG01000444001 Vitis vinifera HOM05D007319 ORTHO05D008576 1.1e-06 58.9 123 30.1
CANSAT64G1375 Cannabis sativa HOM05D007319 ORTHO05D008576 1.5e-06 58.5 123 30.1
PSO541G2656 Papaver somniferum HOM05D007319 ORTHO05D008576 1.5e-06 58.5 125 29.6
C07p00530 Brassica napus HOM05D007319 ORTHO05D008576 1.9e-06 58.2 136 29.4
Sed0019912 Sechium edule HOM05D007319 ORTHO05D008576 1.9e-06 58.2 123 30.1
Potri.013G121700 Populus trichocarpa HOM05D007319 ORTHO05D008576 2.5e-06 57.8 117 28.2
Peaxi162Scf00007g01823 Petunia axillaris HOM05D007319 ORTHO05D008576 5.7e-06 56.6 123 30.1
Potri.013G149650 Populus trichocarpa HOM05D007319 ORTHO05D008576 5.7e-06 56.6 132 27.3
CAN.G640.27 Capsicum annuum HOM05D007319 ORTHO05D008576 7.4e-06 56.2 128 32.0


User provided reference genes

Program Settings