Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0008106g0020 Nicotiana tabacum HOM05D003652 ORTHO05D004190 7.6e-289 996.5 521 100.0
CAN.G89.17 Capsicum annuum HOM05D003652 ORTHO05D004190 1.9e-207 726.1 590 70.8
Nitab4.5_0000140g0050 Nicotiana tabacum HOM05D003652 ORTHO05D004190 2.6e-196 689.1 481 78.2
Sopen12g029120 Solanum pennellii HOM05D003652 ORTHO05D004190 1.1e-194 683.7 648 63.4
Solyc12g056520.3 Solanum lycopersicum HOM05D003652 ORTHO05D004190 2.8e-190 669.1 477 76.1
Peaxi162Scf00765g00049 Petunia axillaris HOM05D003652 ORTHO05D004190 1.4e-189 666.8 597 64.8
Nitab4.5_0005705g0020 Nicotiana tabacum HOM05D003652 ORTHO05D004190 3.1e-189 665.6 612 64.1
Peaxi162Scf01294g00125 Petunia axillaris HOM05D003652 ORTHO05D004190 9.3e-186 654.1 436 81.0
CSS0021982 Camellia sinensis var. sinensis HOM05D003652 ORTHO05D004190 1.5e-183 646.7 597 62.1
CAN.G268.10 Capsicum annuum HOM05D003652 ORTHO05D004190 1.6e-182 643.3 535 67.5
Sopen04g027310 Solanum pennellii HOM05D003652 ORTHO05D004190 3.7e-182 642.1 611 62.8
Actinidia10649 Actinidia chinensis HOM05D003652 ORTHO05D004190 1.8e-181 639.8 603 61.4
Solyc04g071350.3 Solanum lycopersicum HOM05D003652 ORTHO05D004190 2.4e-181 639.4 611 62.5
Nitab4.5_0005926g0010 Nicotiana tabacum HOM05D003652 ORTHO05D004190 8.4e-179 630.9 609 61.4
Actinidia29525 Actinidia chinensis HOM05D003652 ORTHO05D004190 1.6e-177 626.7 591 61.3
GSVIVG01034519001 Vitis vinifera HOM05D003652 ORTHO05D004190 6.7e-176 621.3 603 59.5
Dinv25854 Davidia involucrata HOM05D003652 ORTHO05D004190 1.1e-175 620.5 604 60.6
TAR376G0660 Trochodendron aralioides HOM05D003652 ORTHO05D004190 1.3e-174 617.1 608 60.0
Thecc.08G150000 Theobroma cacao HOM05D003652 ORTHO05D004190 6.9e-173 611.3 606 59.6
Ciclev10000108m.g Citrus clementina HOM05D003652 ORTHO05D004190 1.4e-170 603.6 587 58.9
Lj7C372G9 Lonicera japonica HOM05D003652 ORTHO05D004190 3.2e-170 602.4 537 62.4
MD07G1075500 Malus domestica HOM05D003652 ORTHO05D004190 3.2e-170 602.4 610 57.5
TAR628G0150 Trochodendron aralioides HOM05D003652 ORTHO05D004190 1.3e-168 597.0 612 57.8
CsaV3_7G024680 Cucumis sativus L. HOM05D003652 ORTHO05D004190 2.8e-166 589.3 603 56.4
Aqoxy5G02100 Aquilegia oxysepala HOM05D003652 ORTHO05D004190 3.7e-166 589.0 609 56.3
Potri.002G068900 Populus trichocarpa HOM05D003652 ORTHO05D004190 6.3e-166 588.2 597 56.8
Nn1g06100 Nelumbo nucifera HOM05D003652 ORTHO05D004190 4.1e-165 585.5 592 58.3
Atru.chr13.2145 Acer truncatum HOM05D003652 ORTHO05D004190 1.5e-164 583.6 596 56.9
Rhsim08G0021800 Rhododendron simsii HOM05D003652 ORTHO05D004190 4.5e-164 582.0 697 51.9
MELO3C024093.2 Cucumis melo HOM05D003652 ORTHO05D004190 5.9e-164 581.6 605 56.2
Ca_10620_v3 Cicer arietinum L. HOM05D003652 ORTHO05D004190 2.2e-163 579.7 603 57.5
Prupe.8G058700 Prunus persica HOM05D003652 ORTHO05D004190 2.2e-163 579.7 610 55.2
Potri.005G191500 Populus trichocarpa HOM05D003652 ORTHO05D004190 3.8e-163 578.9 600 56.0
Medtr1g096550 Medicago truncatula HOM05D003652 ORTHO05D004190 2.5e-162 576.2 596 58.1
Duzib116G0402 Durio zibethinus HOM05D003652 ORTHO05D004190 4.2e-162 575.5 598 57.7
TWI34G0668 Tripterygium wilfordii HOM05D003652 ORTHO05D004190 4.2e-162 575.5 605 55.7
CANSAT25G1176 Cannabis sativa HOM05D003652 ORTHO05D004190 5.5e-162 575.1 611 56.1
PGR042G2936 Punica granatum HOM05D003652 ORTHO05D004190 1.2e-161 573.9 610 56.7
Lj5g0007913 Lotus japonicus HOM05D003652 ORTHO05D004190 1.8e-160 570.1 603 56.2
Sabra05G0146300 Salix brachista HOM05D003652 ORTHO05D004190 2.2e-158 563.1 682 50.7
TPR.G8817 Trifolium pratense HOM05D003652 ORTHO05D004190 6.3e-158 561.6 603 56.4
Nn5g28722 Nelumbo nucifera HOM05D003652 ORTHO05D004190 8.2e-158 561.2 574 57.1
Sed0009622 Sechium edule HOM05D003652 ORTHO05D004190 8.2e-158 561.2 595 56.1
Haze_22519 Corylus avellana HOM05D003652 ORTHO05D004190 2.4e-157 559.7 635 53.4
Dinv41091 Davidia involucrata HOM05D003652 ORTHO05D004190 3.1e-157 559.3 455 65.1
MSTRG.22372 Avicennia marina HOM05D003652 ORTHO05D004190 5.3e-157 558.5 606 55.1
Psat6g186720 Pisum sativum HOM05D003652 ORTHO05D004190 5.3e-157 558.5 597 56.1
Cpa.g.sc21.193 Carica papaya HOM05D003652 ORTHO05D004190 9.1e-157 557.8 598 55.0
Lsat_1_v5_gn_7_71861 Lactuca sativa HOM05D003652 ORTHO05D004190 2.6e-156 556.2 591 56.0
Eucgr.F04242 Eucalyptus grandis HOM05D003652 ORTHO05D004190 5.0e-155 552.0 627 54.1
FvH4_7g05280 Fragaria vesca HOM05D003652 ORTHO05D004190 6.5e-155 551.6 587 56.0
Glyma.20G174900 Glycine max HOM05D003652 ORTHO05D004190 1.1e-154 550.8 594 56.6
RcHm_v2.0_Chr1g0332001 Rosa chinensis HOM05D003652 ORTHO05D004190 1.9e-154 550.1 600 54.5
CiPaw.07G160100 Carya illinoinensis HOM05D003652 ORTHO05D004190 4.2e-154 548.9 488 61.1
VMungo0720G3010 Vigna mungo HOM05D003652 ORTHO05D004190 9.4e-154 547.7 592 57.1
Oeu011939.2 Olea europaea HOM05D003652 ORTHO05D004190 1.6e-153 547.0 655 51.9
Lalb_Chr21g0305741 Lupinus albus HOM05D003652 ORTHO05D004190 3.6e-153 545.8 607 55.7
EL10Ac1g01536 Beta vulgaris HOM05D003652 ORTHO05D004190 1.0e-152 544.3 599 55.4
Sabra02G0054200 Salix brachista HOM05D003652 ORTHO05D004190 1.8e-152 543.5 697 48.8
Gorai.005G079300 Gossypium raimondii HOM05D003652 ORTHO05D004190 3.9e-152 542.3 483 60.9
HanXRQChr11g0339321 Helianthus annuus HOM05D003652 ORTHO05D004190 1.1e-151 540.8 595 55.3
Glyma.10G217200 Glycine max HOM05D003652 ORTHO05D004190 1.5e-151 540.4 600 56.0
QL02p033637 Quercus lobata HOM05D003652 ORTHO05D004190 2.6e-151 539.7 644 51.6
CDE06G1552 Ceratophyllum demersum HOM05D003652 ORTHO05D004190 4.4e-151 538.9 610 54.1
Gohir.A02G064300 Gossypium hirsutum HOM05D003652 ORTHO05D004190 5.7e-151 538.5 483 60.5
Sc02g0004140 Simmondsia chinensis HOM05D003652 ORTHO05D004190 1.7e-150 537.0 594 54.4
Gohir.D02G070200 Gossypium hirsutum HOM05D003652 ORTHO05D004190 2.8e-150 536.2 483 60.2
THA.LOC104812038 Tarenaya hassleriana HOM05D003652 ORTHO05D004190 1.8e-149 533.5 612 54.6
Migut.N03225 Erythranthe guttata HOM05D003652 ORTHO05D004190 3.1e-149 532.7 605 53.6
TWI60G1418 Tripterygium wilfordii HOM05D003652 ORTHO05D004190 3.1e-149 532.7 495 59.0
Cc10_g14750 Coffea canephora HOM05D003652 ORTHO05D004190 4.1e-149 532.3 624 54.0
Hund26699 Selenicereus undatus HOM05D003652 ORTHO05D004190 2.0e-148 530.0 586 54.8
SGA_v2.0_scaffold25G11172 Striga asiatica HOM05D003652 ORTHO05D004190 3.5e-148 529.3 606 53.1
Thhalv10018046m.g Eutrema salsugineum HOM05D003652 ORTHO05D004190 1.0e-147 527.7 590 54.1
FAN01G0918 Fragaria x ananassa HOM05D003652 ORTHO05D004190 3.8e-147 525.8 648 50.9
FAN03G2156 Fragaria x ananassa HOM05D003652 ORTHO05D004190 3.8e-147 525.8 648 50.9
Cfa013845 Carpinus fangiana HOM05D003652 ORTHO05D004190 6.5e-147 525.0 590 54.1
FAN06G2696 Fragaria x ananassa HOM05D003652 ORTHO05D004190 8.5e-147 524.6 648 50.8
SGA_v2.0_scaffold19G08667 Striga asiatica HOM05D003652 ORTHO05D004190 2.1e-145 520.0 607 53.0
PSO210G4735 Papaver somniferum HOM05D003652 ORTHO05D004190 4.7e-145 518.8 599 51.9
PSO238G0028 Papaver somniferum HOM05D003652 ORTHO05D004190 4.7e-145 518.8 599 51.9
Aa31LG4G6890 Aethionema arabicum HOM05D003652 ORTHO05D004190 8.0e-145 518.1 612 52.8
C02p34110 Brassica napus HOM05D003652 ORTHO05D004190 2.3e-144 516.5 585 53.8
ATR0772G136 Amborella trichopoda HOM05D003652 ORTHO05D004190 3.0e-144 516.2 617 50.9
MD02G1241200 Malus domestica HOM05D003652 ORTHO05D004190 3.0e-144 516.2 432 64.4
vmacro18508 Vaccinium macrocarpon HOM05D003652 ORTHO05D004190 3.0e-144 516.2 652 50.3
arahy.Tifrunner.gnm1.ann1.2W1LLW Arachis hypogaea HOM05D003652 ORTHO05D004190 8.8e-144 514.6 588 54.1
Ah.05g167890 Amaranthus hybridus HOM05D003652 ORTHO05D004190 1.1e-143 514.2 593 52.8
BcaC03g15706 Brassica carinata HOM05D003652 ORTHO05D004190 1.1e-143 514.2 584 53.3
arahy.Tifrunner.gnm1.ann1.8KD3C5 Arachis hypogaea HOM05D003652 ORTHO05D004190 2.0e-143 513.5 589 53.8
Sp5g31980 Schrenkiella parvula HOM05D003652 ORTHO05D004190 2.0e-143 513.5 598 53.0
AUR62026715 Chenopodium quinoa HOM05D003652 ORTHO05D004190 3.7e-142 509.2 587 53.2
Manes.02G178800 Manihot esculenta HOM05D003652 ORTHO05D004190 8.2e-142 508.1 452 60.8
AUR62013575 Chenopodium quinoa HOM05D003652 ORTHO05D004190 1.1e-141 507.7 605 52.2
Sp1g18810 Schrenkiella parvula HOM05D003652 ORTHO05D004190 1.8e-141 506.9 618 51.1
AT1G76850 Arabidopsis thaliana HOM05D003652 ORTHO05D004190 2.4e-141 506.5 485 57.9
Carub.0001s2061 Capsella rubella HOM05D003652 ORTHO05D004190 2.4e-141 506.5 613 51.7
BraA07t30471Z Brassica rapa HOM05D003652 ORTHO05D004190 5.3e-141 505.4 594 52.4
Aa31LG7G5310 Aethionema arabicum HOM05D003652 ORTHO05D004190 7.0e-141 505.0 603 52.1
A07p28340 Brassica napus HOM05D003652 ORTHO05D004190 9.1e-141 504.6 594 52.5
CARHR070360 Cardamine hirsuta HOM05D003652 ORTHO05D004190 4.5e-140 502.3 601 51.6
DCAR_014431 Daucus carota HOM05D003652 ORTHO05D004190 1.7e-139 500.4 576 51.9
BcaB02g07077 Brassica carinata HOM05D003652 ORTHO05D004190 8.5e-139 498.0 599 51.6
Carub.0002s2373 Capsella rubella HOM05D003652 ORTHO05D004190 8.5e-139 498.0 611 50.9
AL1G34230 Arabidopsis lyrata HOM05D003652 ORTHO05D004190 1.9e-138 496.9 599 50.9
AL2G36970 Arabidopsis lyrata HOM05D003652 ORTHO05D004190 1.9e-138 496.9 601 50.9
C06p31780 Brassica napus HOM05D003652 ORTHO05D004190 7.2e-138 495.0 595 51.8
ECA236G0544 Erigeron canadensis HOM05D003652 ORTHO05D004190 9.4e-138 494.6 505 55.8
BcaC08g45509 Brassica carinata HOM05D003652 ORTHO05D004190 1.2e-137 494.2 598 51.3
BolC6t38307H Brassica oleracea HOM05D003652 ORTHO05D004190 2.1e-137 493.4 595 51.6
SHI18207 Sapria himalayana HOM05D003652 ORTHO05D004190 2.7e-137 493.0 595 50.3
SalBow6G6910 Salvia bowleyana HOM05D003652 ORTHO05D004190 3.6e-137 492.7 592 51.2
AT1G21170 Arabidopsis thaliana HOM05D003652 ORTHO05D004190 5.2e-136 488.8 599 50.4
ClCG09G010020 Citrullus lanatus HOM05D003652 ORTHO05D004190 3.4e-135 486.1 698 45.6
Phvul.007G088900 Phaseolus vulgaris HOM05D003652 ORTHO05D004190 9.7e-135 484.6 460 60.9
Oeu014495.2 Olea europaea HOM05D003652 ORTHO05D004190 5.9e-132 475.3 540 53.5
Os04g0421900 Oryza sativa ssp. japonica HOM05D003652 ORTHO05D004190 2.2e-131 473.4 481 55.1
CARHR021630 Cardamine hirsuta HOM05D003652 ORTHO05D004190 5.5e-130 468.8 454 57.7
MBI09_g45353_MAGBIO Magnolia biondii HOM05D003652 ORTHO05D004190 3.0e-128 463.0 475 55.2
A02p20920 Brassica napus HOM05D003652 ORTHO05D004190 2.2e-126 456.8 480 56.0
HPP92_016941 Vanilla planifolia HOM05D003652 ORTHO05D004190 2.0e-124 450.3 600 49.3
unitig_744.g24568 Utricularia gibba HOM05D003652 ORTHO05D004190 7.2e-122 441.8 562 51.2
ECA247G2571 Erigeron canadensis HOM05D003652 ORTHO05D004190 6.1e-121 438.7 472 53.6
Thhalv10006745m.g Eutrema salsugineum HOM05D003652 ORTHO05D004190 5.4e-117 425.6 317 69.4
HanXRQChr06g0174441 Helianthus annuus HOM05D003652 ORTHO05D004190 5.2e-112 409.1 591 46.7
HanXRQChr02g0045411 Helianthus annuus HOM05D003652 ORTHO05D004190 8.9e-112 408.3 590 46.3
Hma1.2p1_0105F.1_g050770 Hydrangea macrophylla HOM05D003652 ORTHO05D004190 1.0e-107 394.8 262 76.3
FAN10G0990 Fragaria x ananassa HOM05D003652 ORTHO05D004190 1.4e-104 384.4 268 73.1
BolC2t09427H Brassica oleracea HOM05D003652 ORTHO05D004190 6.8e-104 382.1 290 67.6
AagrBONN_evm.TU.Sc2ySwM_344.5035 Anthoceros agrestis HOM05D003652 ORTHO05D004190 4.1e-101 372.9 523 42.6
CDE08G0217 Ceratophyllum demersum HOM05D003652 ORTHO05D004190 5.4e-101 372.5 554 44.0
Mapoly0098s0037 Marchantia polymorpha HOM05D003652 ORTHO05D004190 3.5e-100 369.8 520 44.4
Pp3c5_4060 Physcomitrium patens HOM05D003652 ORTHO05D004190 3.7e-94 349.7 684 37.1
SMO118G0055 Selaginella moellendorffii HOM05D003652 ORTHO05D004190 3.5e-92 343.2 485 42.5
Pp3c1_7430 Physcomitrium patens HOM05D003652 ORTHO05D004190 1.3e-91 341.3 586 39.4
Pp3c11_13110 Physcomitrium patens HOM05D003652 ORTHO05D004190 1.2e-87 328.2 667 36.6
COL.COLO4_37836 Corchorus olitorius HOM05D003652 ORTHO05D004190 2.0e-79 300.8 387 51.2
Zm00001eb083200 Zea mays HOM05D003652 ORTHO05D004190 9.9e-79 298.5 319 53.0
Pp3c24_1100 Physcomitrium patens HOM05D003652 ORTHO05D004190 1.9e-74 284.3 329 48.6
MBI09_g18626_MAGBIO Magnolia biondii HOM05D003652 ORTHO05D004190 1.4e-72 278.1 310 52.9
PGSC0003DMG400010789 Solanum tuberosum HOM05D003652 ORTHO05D004190 4.8e-65 253.1 218 70.2
Aa31LG7G5260 Aethionema arabicum HOM05D003652 ORTHO05D004190 4.0e-64 250.0 174 75.9
Zm00001eb422350 Zea mays HOM05D003652 ORTHO05D004190 1.1e-61 241.9 209 56.9
SEGI_34715 Sequoiadendron giganteum HOM05D003652 ORTHO05D004190 7.2e-53 212.6 203 52.7
MBI02_g15889_MAGBIO Magnolia biondii HOM05D003652 ORTHO05D004190 4.8e-49 199.9 128 79.7
BcaB02g07120 Brassica carinata HOM05D003652 ORTHO05D004190 9.0e-48 195.7 278 46.8
Medtr3g008090 Medicago truncatula HOM05D003652 ORTHO05D004190 5.1e-43 179.9 166 63.9
COL.COLO4_33551 Corchorus olitorius HOM05D003652 ORTHO05D004190 9.1e-40 169.1 221 48.4
MBI17_g42470_MAGBIO Magnolia biondii HOM05D003652 ORTHO05D004190 3.7e-33 147.1 149 53.7
CBR_g18955 Chara braunii HOM05D000019 ORTHO05D000048 4.8e-33 146.7 235 36.6
SEGI_16189 Sequoiadendron giganteum HOM05D003652 ORTHO05D004190 8.2e-33 146.0 100 74.0
Zm00001eb342060 Zea mays HOM05D003652 ORTHO05D004190 1.2e-31 142.1 101 72.3
Zm00001eb119180 Zea mays HOM05D003652 ORTHO05D004190 7.2e-29 132.9 101 66.3
Zm00001eb092050 Zea mays HOM05D003652 ORTHO05D004190 2.6e-26 124.4 94 67.0
MBI17_g21001_MAGBIO Magnolia biondii HOM05D003652 ORTHO05D004190 9.8e-18 95.9 187 35.8
SEGI_20180 Sequoiadendron giganteum HOM05D003652 ORTHO05D004190 1.5e-13 82.0 228 28.9
SEGI_05372 Sequoiadendron giganteum HOM05D003652 ORTHO05D004190 9.4e-13 79.3 113 39.8
Zm00001eb002970 Zea mays HOM05D000488 ORTHO05D004190 2.0e-10 71.6 76 48.7
MBI17_g19402_MAGBIO Magnolia biondii HOM05D003652 ORTHO05D004190 7.5e-10 69.7 72 52.8
arahy.Tifrunner.gnm1.ann1.0G6L2R Arachis hypogaea HOM05D003580 ORTHO05D004441 3.7e-09 67.4 61 60.7
Cre16.g684600 Chlamydomonas reinhardtii HOM05D003652 ORTHO05D004190 6.3e-09 66.6 115 31.3
Lalb_Chr06g0162031 Lupinus albus HOM05D003652 ORTHO05D004190 2.0e-07 61.6 151 37.7
MD02G1241400 Malus domestica HOM05D003652 ORTHO05D004190 2.7e-07 61.2 49 59.2
RcHm_v2.0_Chr7g0230911 Rosa chinensis HOM05D004640 ORTHO05D005489 5.9e-07 60.1 46 67.4
Lalb_Chr06g0162011 Lupinus albus HOM05D003652 ORTHO05D004190 1.7e-06 58.5 99 40.4
RcHm_v2.0_Chr7g0219231 Rosa chinensis HOM05D003652 ORTHO05D005489 2.3e-06 58.2 46 65.2
Zm00001eb269890 Zea mays HOM05D003652 ORTHO05D004190 6.6e-06 56.6 37 67.6


User provided reference genes

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