Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0008106g0010 Nicotiana tabacum HOM05D003652 ORTHO05D004190 7.5e-278 959.9 493 100.0
Nitab4.5_0000140g0050 Nicotiana tabacum HOM05D003652 ORTHO05D004190 6.4e-253 877.1 480 93.8
Peaxi162Scf01294g00125 Petunia axillaris HOM05D003652 ORTHO05D004190 7.1e-236 820.5 482 88.2
CAN.G89.17 Capsicum annuum HOM05D003652 ORTHO05D004190 6.0e-235 817.4 482 85.9
Solyc12g056520.3 Solanum lycopersicum HOM05D003652 ORTHO05D004190 6.6e-234 813.9 482 86.5
Nitab4.5_0005926g0010 Nicotiana tabacum HOM05D003652 ORTHO05D004190 6.2e-224 780.8 489 83.0
Peaxi162Scf00765g00049 Petunia axillaris HOM05D003652 ORTHO05D004190 9.0e-223 776.9 483 82.2
Nitab4.5_0005705g0020 Nicotiana tabacum HOM05D003652 ORTHO05D004190 3.4e-222 775.0 481 83.6
CAN.G268.10 Capsicum annuum HOM05D003652 ORTHO05D004190 1.3e-216 756.5 483 81.0
Dinv41091 Davidia involucrata HOM05D003652 ORTHO05D004190 7.9e-211 737.3 484 78.5
Sopen04g027310 Solanum pennellii HOM05D003652 ORTHO05D004190 7.9e-211 737.3 483 78.5
Solyc04g071350.3 Solanum lycopersicum HOM05D003652 ORTHO05D004190 3.3e-209 731.9 483 77.8
CSS0021982 Camellia sinensis var. sinensis HOM05D003652 ORTHO05D004190 2.6e-206 722.2 484 76.4
vmacro18508 Vaccinium macrocarpon HOM05D003652 ORTHO05D004190 1.7e-205 719.5 485 76.1
Hma1.2p1_0105F.1_g050770 Hydrangea macrophylla HOM05D003652 ORTHO05D004190 2.1e-203 712.6 493 75.5
Actinidia10649 Actinidia chinensis HOM05D003652 ORTHO05D004190 1.8e-202 709.5 509 73.5
Cc10_g14750 Coffea canephora HOM05D003652 ORTHO05D004190 1.3e-200 703.4 488 75.4
TWI34G0668 Tripterygium wilfordii HOM05D003652 ORTHO05D004190 4.1e-199 698.4 484 74.0
Duzib116G0402 Durio zibethinus HOM05D003652 ORTHO05D004190 4.5e-198 694.9 484 72.9
Rhsim08G0021800 Rhododendron simsii HOM05D003652 ORTHO05D004190 3.8e-197 691.8 543 68.3
TWI60G1418 Tripterygium wilfordii HOM05D003652 ORTHO05D004190 1.9e-196 689.5 484 73.3
Migut.N03225 Erythranthe guttata HOM05D003652 ORTHO05D004190 2.5e-196 689.1 486 73.5
GSVIVG01034519001 Vitis vinifera HOM05D003652 ORTHO05D004190 2.5e-196 689.1 483 73.5
Gohir.D02G070200 Gossypium hirsutum HOM05D003652 ORTHO05D004190 3.6e-195 685.3 484 72.1
CiPaw.07G160100 Carya illinoinensis HOM05D003652 ORTHO05D004190 4.7e-195 684.9 482 72.0
Gorai.005G079300 Gossypium raimondii HOM05D003652 ORTHO05D004190 1.4e-194 683.3 484 71.9
Gohir.A02G064300 Gossypium hirsutum HOM05D003652 ORTHO05D004190 1.8e-194 682.9 484 71.9
Potri.002G068900 Populus trichocarpa HOM05D003652 ORTHO05D004190 6.7e-194 681.0 491 72.3
Potri.005G191500 Populus trichocarpa HOM05D003652 ORTHO05D004190 8.8e-194 680.6 491 72.9
SalBow6G6910 Salvia bowleyana HOM05D003652 ORTHO05D004190 8.8e-194 680.6 487 72.1
Oeu011939.2 Olea europaea HOM05D003652 ORTHO05D004190 1.5e-193 679.9 482 73.9
QL02p033637 Quercus lobata HOM05D003652 ORTHO05D004190 5.7e-193 677.9 484 71.7
MSTRG.22372 Avicennia marina HOM05D003652 ORTHO05D004190 2.2e-192 676.0 493 71.6
TAR628G0150 Trochodendron aralioides HOM05D003652 ORTHO05D004190 3.7e-192 675.2 484 71.5
Dinv25854 Davidia involucrata HOM05D003652 ORTHO05D004190 1.1e-191 673.7 442 78.3
PGR042G2936 Punica granatum HOM05D003652 ORTHO05D004190 5.3e-191 671.4 487 71.9
CANSAT25G1176 Cannabis sativa HOM05D003652 ORTHO05D004190 9.1e-191 670.6 484 70.7
Cfa013845 Carpinus fangiana HOM05D003652 ORTHO05D004190 9.1e-191 670.6 485 71.1
Atru.chr13.2145 Acer truncatum HOM05D003652 ORTHO05D004190 1.5e-190 669.8 484 71.1
Cpa.g.sc21.193 Carica papaya HOM05D003652 ORTHO05D004190 1.5e-190 669.8 484 70.9
TAR376G0660 Trochodendron aralioides HOM05D003652 ORTHO05D004190 2.6e-190 669.1 487 71.0
Manes.02G178800 Manihot esculenta HOM05D003652 ORTHO05D004190 2.2e-189 666.0 484 72.1
MD07G1075500 Malus domestica HOM05D003652 ORTHO05D004190 3.8e-189 665.2 483 71.0
Sabra02G0054200 Salix brachista HOM05D003652 ORTHO05D004190 3.8e-189 665.2 491 70.9
Prupe.8G058700 Prunus persica HOM05D003652 ORTHO05D004190 6.5e-189 664.5 484 70.2
RcHm_v2.0_Chr1g0332001 Rosa chinensis HOM05D003652 ORTHO05D004190 1.9e-188 662.9 484 69.8
Ciclev10000108m.g Citrus clementina HOM05D003652 ORTHO05D004190 4.2e-188 661.8 494 70.4
MD02G1241400 Malus domestica HOM05D003652 ORTHO05D004190 1.2e-187 660.2 482 70.3
Sc02g0004140 Simmondsia chinensis HOM05D003652 ORTHO05D004190 1.6e-187 659.8 485 70.1
Sopen12g029110 Solanum pennellii HOM05D003652 ORTHO05D004190 1.6e-187 659.8 386 87.0
Nn5g28722 Nelumbo nucifera HOM05D003652 ORTHO05D004190 8.0e-187 657.5 486 70.6
FAN03G2156 Fragaria x ananassa HOM05D003652 ORTHO05D004190 8.8e-186 654.1 484 68.6
FAN06G2696 Fragaria x ananassa HOM05D003652 ORTHO05D004190 8.8e-186 654.1 484 68.6
FvH4_7g05280 Fragaria vesca HOM05D003652 ORTHO05D004190 1.5e-185 653.3 484 68.6
FAN01G0918 Fragaria x ananassa HOM05D003652 ORTHO05D004190 2.6e-185 652.5 484 68.4
AUR62013575 Chenopodium quinoa HOM05D003652 ORTHO05D004190 5.7e-185 651.4 484 67.1
SGA_v2.0_scaffold19G08667 Striga asiatica HOM05D003652 ORTHO05D004190 1.3e-184 650.2 484 69.6
Aqoxy5G02100 Aquilegia oxysepala HOM05D003652 ORTHO05D004190 2.8e-184 649.0 484 71.3
Glyma.20G174900 Glycine max HOM05D003652 ORTHO05D004190 6.3e-184 647.9 481 67.4
Lj7C372G9 Lonicera japonica HOM05D003652 ORTHO05D004190 8.2e-184 647.5 486 70.8
Lalb_Chr21g0305741 Lupinus albus HOM05D003652 ORTHO05D004190 1.1e-183 647.1 482 67.4
AUR62026715 Chenopodium quinoa HOM05D003652 ORTHO05D004190 1.8e-183 646.4 484 66.9
DCAR_014431 Daucus carota HOM05D003652 ORTHO05D004190 5.3e-183 644.8 484 70.2
Glyma.10G217200 Glycine max HOM05D003652 ORTHO05D004190 5.3e-183 644.8 481 67.4
PSO210G4735 Papaver somniferum HOM05D003652 ORTHO05D004190 5.9e-182 641.3 487 69.6
PSO238G0028 Papaver somniferum HOM05D003652 ORTHO05D004190 1.3e-181 640.2 487 69.6
EL10Ac1g01536 Beta vulgaris HOM05D003652 ORTHO05D004190 3.8e-181 638.6 485 67.4
Medtr1g096550 Medicago truncatula HOM05D003652 ORTHO05D004190 1.9e-180 636.3 483 67.7
Ca_10620_v3 Cicer arietinum L. HOM05D003652 ORTHO05D004190 2.5e-180 636.0 482 67.6
SGA_v2.0_scaffold25G11172 Striga asiatica HOM05D003652 ORTHO05D004190 2.5e-180 636.0 485 69.7
Eucgr.F04242 Eucalyptus grandis HOM05D003652 ORTHO05D004190 3.2e-180 635.6 484 68.0
Lj5g0007913 Lotus japonicus HOM05D003652 ORTHO05D004190 4.2e-180 635.2 482 66.8
TPR.G8817 Trifolium pratense HOM05D003652 ORTHO05D004190 1.0e-178 630.6 483 66.7
Hund26699 Selenicereus undatus HOM05D003652 ORTHO05D004190 1.4e-178 630.2 483 66.9
Actinidia29525 Actinidia chinensis HOM05D003652 ORTHO05D004190 3.3e-177 625.5 431 74.7
ClCG09G010020 Citrullus lanatus HOM05D003652 ORTHO05D004190 7.5e-177 624.4 485 68.9
CsaV3_7G024680 Cucumis sativus L. HOM05D003652 ORTHO05D004190 7.5e-177 624.4 485 68.7
Sabra05G0146300 Salix brachista HOM05D003652 ORTHO05D004190 9.7e-177 624.0 491 68.8
Haze_22519 Corylus avellana HOM05D003652 ORTHO05D004190 2.8e-176 622.5 603 57.4
VMungo0720G3010 Vigna mungo HOM05D003652 ORTHO05D004190 2.8e-176 622.5 484 64.5
Phvul.007G088900 Phaseolus vulgaris HOM05D003652 ORTHO05D004190 4.8e-176 621.7 480 65.4
unitig_744.g24568 Utricularia gibba HOM05D003652 ORTHO05D004190 1.1e-175 620.5 490 68.8
MELO3C024093.2 Cucumis melo HOM05D003652 ORTHO05D004190 7.0e-175 617.8 485 68.5
Psat6g186720 Pisum sativum HOM05D003652 ORTHO05D004190 1.2e-174 617.1 468 67.3
Nn1g06100 Nelumbo nucifera HOM05D003652 ORTHO05D004190 1.3e-173 613.6 485 67.0
Carub.0002s2373 Capsella rubella HOM05D003652 ORTHO05D004190 3.0e-170 602.4 483 64.2
THA.LOC104812038 Tarenaya hassleriana HOM05D003652 ORTHO05D004190 1.2e-169 600.5 488 65.8
Sed0009622 Sechium edule HOM05D003652 ORTHO05D004190 1.5e-169 600.1 485 66.8
AL2G36970 Arabidopsis lyrata HOM05D003652 ORTHO05D004190 2.0e-169 599.7 483 64.2
HanXRQChr11g0339321 Helianthus annuus HOM05D003652 ORTHO05D004190 5.7e-169 598.2 485 65.4
ECA236G0544 Erigeron canadensis HOM05D003652 ORTHO05D004190 9.8e-169 597.4 485 64.1
AT1G76850 Arabidopsis thaliana HOM05D003652 ORTHO05D004190 1.3e-168 597.0 483 63.8
CARHR070360 Cardamine hirsuta HOM05D003652 ORTHO05D004190 6.3e-168 594.7 484 63.4
Thhalv10006745m.g Eutrema salsugineum HOM05D003652 ORTHO05D004190 3.8e-165 585.5 485 63.3
Sp5g31980 Schrenkiella parvula HOM05D003652 ORTHO05D004190 5.0e-165 585.1 484 63.8
Aa31LG4G6890 Aethionema arabicum HOM05D003652 ORTHO05D004190 1.9e-164 583.2 483 62.3
AT1G21170 Arabidopsis thaliana HOM05D003652 ORTHO05D004190 5.5e-164 581.6 485 63.7
A07p28340 Brassica napus HOM05D003652 ORTHO05D004190 9.5e-164 580.9 484 62.8
BraA07t30471Z Brassica rapa HOM05D003652 ORTHO05D004190 9.5e-164 580.9 484 62.8
BcaC08g45509 Brassica carinata HOM05D003652 ORTHO05D004190 1.6e-163 580.1 484 63.0
C06p31780 Brassica napus HOM05D003652 ORTHO05D004190 1.6e-163 580.1 484 63.0
BolC6t38307H Brassica oleracea HOM05D003652 ORTHO05D004190 1.6e-163 580.1 484 63.0
Aa31LG7G5310 Aethionema arabicum HOM05D003652 ORTHO05D004190 2.8e-163 579.3 485 63.1
AL1G34230 Arabidopsis lyrata HOM05D003652 ORTHO05D004190 3.6e-163 578.9 485 63.7
Lsat_1_v5_gn_7_71861 Lactuca sativa HOM05D003652 ORTHO05D004190 6.1e-163 578.2 472 65.3
Sp1g18810 Schrenkiella parvula HOM05D003652 ORTHO05D004190 6.1e-163 578.2 477 63.9
BcaB02g07077 Brassica carinata HOM05D003652 ORTHO05D004190 6.8e-162 574.7 484 62.0
Carub.0001s2061 Capsella rubella HOM05D003652 ORTHO05D004190 1.3e-160 570.5 485 62.3
Rhsim10G0066500 Rhododendron simsii HOM05D003652 ORTHO05D004190 7.0e-159 564.7 389 75.6
CARHR021630 Cardamine hirsuta HOM05D003652 ORTHO05D004190 2.9e-157 559.3 486 61.9
C02p34110 Brassica napus HOM05D003652 ORTHO05D004190 8.0e-155 551.2 486 60.5
ATR0772G136 Amborella trichopoda HOM05D003652 ORTHO05D004190 1.4e-154 550.4 488 59.2
COL.COLO4_37835 Corchorus olitorius HOM05D003652 ORTHO05D004190 2.0e-153 546.6 390 73.3
HanXRQChr06g0174441 Helianthus annuus HOM05D003652 ORTHO05D004190 1.2e-150 537.3 472 60.8
BcaC03g15706 Brassica carinata HOM05D003652 ORTHO05D004190 2.7e-150 536.2 487 59.3
BolC2t09427H Brassica oleracea HOM05D003652 ORTHO05D004190 2.7e-150 536.2 487 59.3
MBI09_g20113_MAGBIO Magnolia biondii HOM05D003652 ORTHO05D004190 5.0e-149 531.9 485 59.8
CDE08G0217 Ceratophyllum demersum HOM05D003652 ORTHO05D004190 1.5e-148 530.4 484 58.5
arahy.Tifrunner.gnm1.ann1.2W1LLW Arachis hypogaea HOM05D003652 ORTHO05D004190 1.9e-148 530.0 414 65.9
arahy.Tifrunner.gnm1.ann1.8KD3C5 Arachis hypogaea HOM05D003652 ORTHO05D004190 1.9e-148 530.0 414 65.9
HanXRQChr02g0045411 Helianthus annuus HOM05D003652 ORTHO05D004190 3.1e-146 522.7 497 57.7
ECA247G2571 Erigeron canadensis HOM05D003652 ORTHO05D004190 2.6e-145 519.6 470 58.7
SHI18207 Sapria himalayana HOM05D003652 ORTHO05D004190 2.1e-139 500.0 444 59.9
Zm00001eb083200 Zea mays HOM05D003652 ORTHO05D004190 4.4e-137 492.3 461 57.0
Os04g0421900 Oryza sativa ssp. japonica HOM05D003652 ORTHO05D004190 4.9e-136 488.8 493 55.8
Zm00001eb422350 Zea mays HOM05D003652 ORTHO05D004190 6.4e-136 488.4 488 55.5
Thecc.08G150000 Theobroma cacao HOM05D003652 ORTHO05D004190 1.4e-135 487.3 340 72.1
CDE06G1552 Ceratophyllum demersum HOM05D003652 ORTHO05D004190 2.4e-135 486.5 486 55.1
SEGI_34715 Sequoiadendron giganteum HOM05D003652 ORTHO05D004190 2.3e-125 453.4 501 50.9
Thhalv10018046m.g Eutrema salsugineum HOM05D003652 ORTHO05D004190 3.0e-117 426.4 338 65.1
Oeu014495.2 Olea europaea HOM05D003652 ORTHO05D004190 1.4e-103 380.9 242 77.7
PGSC0003DMG400024108 Solanum tuberosum HOM05D003652 ORTHO05D004190 4.5e-97 359.4 214 85.5
Mapoly0098s0037 Marchantia polymorpha HOM05D003652 ORTHO05D004190 1.2e-86 324.7 452 41.4
AagrBONN_evm.TU.Sc2ySwM_344.5035 Anthoceros agrestis HOM05D003652 ORTHO05D004190 3.3e-84 316.6 448 42.4
Ah.05g167890 Amaranthus hybridus HOM05D003652 ORTHO05D004190 2.8e-83 313.5 294 56.5
FAN10G0990 Fragaria x ananassa HOM05D003652 ORTHO05D004190 7.7e-81 305.4 244 64.3
Pp3c11_13110 Physcomitrium patens HOM05D003652 ORTHO05D004190 7.9e-78 295.4 444 39.6
Pp3c5_4060 Physcomitrium patens HOM05D003652 ORTHO05D004190 7.4e-76 288.9 453 38.0
Pp3c1_7430 Physcomitrium patens HOM05D003652 ORTHO05D004190 8.2e-75 285.4 450 38.4
A02p20930 Brassica napus HOM05D003652 ORTHO05D004190 1.1e-63 248.4 553 36.7
MBI09_g47603_MAGBIO Magnolia biondii HOM05D003652 ORTHO05D004190 1.6e-62 244.6 195 67.7
Pp3c24_1100 Physcomitrium patens HOM05D003652 ORTHO05D004190 2.1e-62 244.2 457 33.7
CBR_g18955 Chara braunii HOM05D000019 ORTHO05D000048 2.4e-58 230.7 499 32.1
MBI09_g18624_MAGBIO Magnolia biondii HOM05D003652 ORTHO05D004190 2.7e-49 200.7 194 58.8
Lalb_Chr06g0162011 Lupinus albus HOM05D003652 ORTHO05D004190 1.1e-39 168.7 112 74.1
Sopen12g029120 Solanum pennellii HOM05D003652 ORTHO05D004190 3.6e-38 163.7 95 87.4
Actinidia01153 Actinidia chinensis HOM05D003652 ORTHO05D004190 4.7e-30 136.7 94 72.3
MBI17_g42470_MAGBIO Magnolia biondii HOM05D003652 ORTHO05D004190 2.2e-27 127.9 96 65.6
HPP92_016941 Vanilla planifolia HOM05D003652 ORTHO05D004190 7.8e-25 119.4 105 55.2
Nn1g00073 Nelumbo nucifera HOM05D003652 ORTHO05D004190 3.0e-24 117.5 118 55.1
BcaC05g26024 Brassica carinata HOM05D003652 ORTHO05D004190 9.5e-23 112.5 107 57.9
SMO118G0055 Selaginella moellendorffii HOM05D003652 ORTHO05D004190 8.1e-22 109.4 208 31.7
FAN10G3104 Fragaria x ananassa HOM05D003652 ORTHO05D004190 1.8e-21 108.2 87 63.2
A06p17210 Brassica napus HOM05D003652 ORTHO05D004190 1.7e-19 101.7 131 48.1
VMungo0647G1536 Vigna mungo HOM05D003652 ORTHO05D004190 7.6e-12 76.3 62 56.5
C05p19910 Brassica napus HOM05D003652 ORTHO05D004190 1.9e-10 71.6 94 45.7
BolC5t30688H Brassica oleracea HOM05D003652 ORTHO05D004190 1.9e-10 71.6 94 45.7
Lalb_Chr02g0141781 Lupinus albus HOM05D003652 ORTHO05D004190 8.7e-08 62.8 38 84.2


User provided reference genes

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