Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0008051g0010 Nicotiana tabacum HOM05D004981 ORTHO05D005635 1.6e-219 765.8 389 100.0
PGSC0003DMG400011507 Solanum tuberosum HOM05D004981 ORTHO05D005635 1.4e-154 550.1 329 87.2
Solyc04g009060.4 Solanum lycopersicum HOM05D004981 ORTHO05D005635 7.5e-148 527.7 329 84.8
Sopen04g004240 Solanum pennellii HOM05D004981 ORTHO05D005635 6.3e-147 524.6 329 84.2
CAN.G274.6 Capsicum annuum HOM05D004981 ORTHO05D005635 1.5e-143 513.5 329 82.4
Peaxi162Scf00152g01024 Petunia axillaris HOM05D004981 ORTHO05D005635 2.0e-140 503.1 303 84.8
Nitab4.5_0000480g0020 Nicotiana tabacum HOM05D004981 ORTHO05D005635 5.4e-122 441.8 263 89.4
Lj5A239G83 Lonicera japonica HOM05D004981 ORTHO05D005635 1.1e-101 374.4 384 56.8
Cc02_g21590 Coffea canephora HOM05D004981 ORTHO05D005635 6.4e-99 365.2 332 62.3
Oeu047361.1 Olea europaea HOM05D004981 ORTHO05D005635 8.4e-99 364.8 335 61.2
Dinv24195 Davidia involucrata HOM05D004981 ORTHO05D005635 4.2e-98 362.5 340 61.2
CSS0034779 Camellia sinensis var. sinensis HOM05D004981 ORTHO05D005635 2.4e-93 346.7 336 60.7
Actinidia28057 Actinidia chinensis HOM05D004981 ORTHO05D007483 3.8e-91 339.3 338 59.2
Sed0011642 Sechium edule HOM05D004981 ORTHO05D005635 2.1e-89 333.6 331 58.3
CiPaw.06G153000 Carya illinoinensis HOM05D004981 ORTHO05D005635 3.5e-89 332.8 340 58.2
MELO3C018646.2 Cucumis melo HOM05D004981 ORTHO05D005635 1.0e-88 331.3 331 58.3
Oeu011769.5 Olea europaea HOM05D004981 ORTHO05D005635 3.9e-88 329.3 372 54.6
Cfa005605 Carpinus fangiana HOM05D004981 ORTHO05D005635 8.7e-88 328.2 340 56.5
CANSAT11G0061 Cannabis sativa HOM05D004981 ORTHO05D005635 9.6e-87 324.7 336 58.3
GSVIVG01029180001 Vitis vinifera HOM05D004981 ORTHO05D005635 2.8e-86 323.2 326 57.4
MSTRG.20297 Avicennia marina HOM05D004981 ORTHO05D005635 3.7e-86 322.8 259 67.2
CsaV3_7G006460 Cucumis sativus L. HOM05D004981 ORTHO05D005635 3.7e-86 322.8 331 57.1
TAR114G0002 Trochodendron aralioides HOM05D004981 ORTHO05D005635 1.1e-85 321.2 332 55.1
Prupe.8G061500 Prunus persica HOM05D004981 ORTHO05D005635 2.4e-85 320.1 348 55.5
Thecc.02G139100 Theobroma cacao HOM05D004981 ORTHO05D005635 4.1e-85 319.3 355 55.5
Gohir.A03G173700 Gossypium hirsutum HOM05D004981 ORTHO05D005635 4.5e-84 315.8 338 57.7
QL11p020696 Quercus lobata HOM05D004981 ORTHO05D005635 1.0e-83 314.7 348 54.3
Rhsim05G0107500 Rhododendron simsii HOM05D004981 ORTHO05D005635 3.8e-83 312.8 344 54.9
ClCG09G015370 Citrullus lanatus HOM05D004981 ORTHO05D005635 5.0e-83 312.4 336 56.8
Rhsim05G0107600 Rhododendron simsii HOM05D004981 ORTHO05D005635 9.3e-82 308.1 343 54.2
Gorai.005G219800 Gossypium raimondii HOM05D004981 ORTHO05D005635 1.2e-81 307.8 324 57.7
Nn5g30124 Nelumbo nucifera HOM05D004981 ORTHO05D005635 2.1e-81 307.0 330 55.2
MD05G1045100 Malus domestica HOM05D004981 ORTHO05D005635 2.7e-81 306.6 335 54.0
Duzib132G0770 Durio zibethinus HOM05D004981 ORTHO05D005635 4.6e-81 305.8 353 53.8
Atru.chr5.2124 Acer truncatum HOM05D004981 ORTHO05D005635 6.1e-81 305.4 360 51.1
Duzib248G0633 Durio zibethinus HOM05D004981 ORTHO05D005635 6.1e-81 305.4 351 55.0
Gohir.D02G196800 Gossypium hirsutum HOM05D004981 ORTHO05D005635 7.9e-81 305.1 324 57.4
COL.COLO4_24958 Corchorus olitorius HOM05D004981 ORTHO05D005635 1.8e-80 303.9 351 54.1
Hma1.2p1_0704F.1_g206680 Hydrangea macrophylla HOM05D004981 ORTHO05D005635 3.0e-80 303.1 274 63.9
Migut.B00612 Erythranthe guttata HOM05D004981 ORTHO05D005635 5.1e-80 302.4 329 54.4
Gohir.A13G067000 Gossypium hirsutum HOM05D004981 ORTHO05D005635 1.9e-79 300.4 350 51.7
Gohir.D13G054600 Gossypium hirsutum HOM05D004981 ORTHO05D005635 1.9e-79 300.4 350 51.7
Ca_00133_v3 Cicer arietinum L. HOM05D004981 ORTHO05D005635 7.4e-79 298.5 346 52.3
Cpa.g.sc49.24 Carica papaya HOM05D004981 ORTHO05D005635 9.7e-79 298.1 327 53.5
MBI02_g08724_MAGBIO Magnolia biondii HOM05D004981 ORTHO05D005635 1.6e-78 297.4 304 56.2
TWI59G1067 Tripterygium wilfordii HOM05D004981 ORTHO05D005635 1.6e-78 297.4 334 53.0
Gorai.013G061400 Gossypium raimondii HOM05D004981 ORTHO05D005635 2.2e-78 297.0 350 51.4
Dinv09034 Davidia involucrata HOM05D004981 ORTHO05D005635 2.8e-78 296.6 248 63.3
Sc20g0002060 Simmondsia chinensis HOM05D004981 ORTHO05D005635 2.8e-78 296.6 324 52.2
PGR142G3166 Punica granatum HOM05D004981 ORTHO05D005635 1.1e-77 294.7 343 53.1
Manes.06G012400 Manihot esculenta HOM05D004981 ORTHO05D005635 5.3e-77 292.4 341 51.9
Potri.003G023700 Populus trichocarpa HOM05D004981 ORTHO05D005635 9.0e-77 291.6 339 53.4
SGA_v2.0_scaffold83G26298 Striga asiatica HOM05D004981 ORTHO05D005635 4.5e-76 289.3 331 53.8
Phvul.006G206700 Phaseolus vulgaris HOM05D004981 ORTHO05D005635 1.3e-75 287.7 333 54.1
Potri.001G205700 Populus trichocarpa HOM05D004981 ORTHO05D005635 2.2e-75 287.0 335 49.6
Lalb_Chr20g0123041 Lupinus albus HOM05D004981 ORTHO05D005635 6.5e-75 285.4 350 52.0
VMungo0540G0644 Vigna mungo HOM05D004981 ORTHO05D005635 1.4e-74 284.3 340 52.4
arahy.Tifrunner.gnm1.ann1.NXB9BB Arachis hypogaea HOM05D004981 ORTHO05D005635 3.2e-74 283.1 343 50.4
arahy.Tifrunner.gnm1.ann1.NS4PA6 Arachis hypogaea HOM05D004981 ORTHO05D005635 9.4e-74 281.6 343 50.4
Glyma.08G179200 Glycine max HOM05D004981 ORTHO05D005635 2.7e-73 280.0 361 50.1
Lj6g0025255 Lotus japonicus HOM05D004981 ORTHO05D005635 6.7e-72 275.4 340 49.7
Glyma.15G053300 Glycine max HOM05D004981 ORTHO05D005635 8.8e-72 275.0 361 48.8
Medtr2g008810 Medicago truncatula HOM05D004981 ORTHO05D005635 2.0e-71 273.9 319 54.2
Eucgr.I02666 Eucalyptus grandis HOM05D004981 ORTHO05D005635 2.5e-71 273.5 254 61.8
ATR0753G166 Amborella trichopoda HOM05D004981 ORTHO05D005635 3.3e-71 273.1 346 48.3
Ciclev10025761m.g Citrus clementina HOM05D004981 ORTHO05D005635 1.3e-70 271.2 361 48.2
HanXRQChr16g0514321 Helianthus annuus HOM05D004981 ORTHO05D005635 2.8e-70 270.0 338 50.0
Lsat_1_v5_gn_5_107300 Lactuca sativa HOM05D004981 ORTHO05D005635 3.7e-70 269.6 338 49.4
CDE10G0645 Ceratophyllum demersum HOM05D004981 ORTHO05D005635 6.3e-70 268.9 329 48.6
Sabra01G0158000 Salix brachista HOM05D004981 ORTHO05D005635 5.3e-69 265.8 364 47.0
SalBow5G0436 Salvia bowleyana HOM05D004981 ORTHO05D005635 4.5e-68 262.7 246 60.2
vmacro19928 Vaccinium macrocarpon HOM05D004981 ORTHO05D005635 1.3e-67 261.2 444 43.7
Psat1g216680 Pisum sativum HOM05D004981 ORTHO05D005635 1.7e-67 260.8 326 51.5
ECA234G4021 Erigeron canadensis HOM05D004981 ORTHO05D005635 1.4e-66 257.7 336 48.2
THA.LOC104818438 Tarenaya hassleriana HOM05D004981 ORTHO05D005635 3.6e-65 253.1 342 48.8
AUR62010122 Chenopodium quinoa HOM05D004981 ORTHO05D005635 3.9e-64 249.6 331 47.4
Sabra03G0014800 Salix brachista HOM05D004981 ORTHO05D005635 3.9e-64 249.6 233 59.7
FAN18G1425 Fragaria x ananassa HOM05D004981 ORTHO05D005635 4.8e-62 242.7 336 47.9
TPR.G9514 Trifolium pratense HOM05D004981 ORTHO05D005635 1.8e-61 240.7 261 54.8
DCAR_021855 Daucus carota HOM05D004981 ORTHO05D005635 2.4e-61 240.4 364 45.3
TPR.G21754 Trifolium pratense HOM05D004981 ORTHO05D005635 3.1e-61 240.0 227 60.8
FAN04G0403 Fragaria x ananassa HOM05D004981 ORTHO05D005635 1.5e-60 237.7 336 47.3
SEGI_39436 Sequoiadendron giganteum HOM05D004981 ORTHO05D005635 2.2e-59 233.8 324 46.6
EL10Ac9g21471 Beta vulgaris HOM05D004981 ORTHO05D005635 2.9e-59 233.4 325 46.5
RcHm_v2.0_Chr7g0191681 Rosa chinensis HOM05D004981 ORTHO05D005635 5.0e-59 232.6 265 55.5
FAN08G0200 Fragaria x ananassa HOM05D004981 ORTHO05D005635 1.9e-58 230.7 263 54.0
AUR62013118 Chenopodium quinoa HOM05D004981 ORTHO05D005635 3.2e-58 229.9 345 44.1
Aa31LG3G17630 Aethionema arabicum HOM05D004981 ORTHO05D005635 7.2e-58 228.8 323 47.7
FvH4_5g07000 Fragaria vesca HOM05D004981 ORTHO05D005635 9.4e-58 228.4 318 48.1
A10p27880 Brassica napus HOM05D004981 ORTHO05D005635 1.2e-57 228.0 264 52.3
BraA10t44837Z Brassica rapa HOM05D004981 ORTHO05D005635 2.1e-57 227.3 264 52.3
Mapoly0041s0053 Marchantia polymorpha HOM05D004981 ORTHO05D005635 2.1e-57 227.3 304 49.3
PSO781G0052 Papaver somniferum HOM05D004981 ORTHO05D005635 2.1e-57 227.3 341 44.9
C09p67980 Brassica napus HOM05D004981 ORTHO05D005635 2.7e-57 226.9 264 52.3
BolC9t59557H Brassica oleracea HOM05D004981 ORTHO05D005635 2.7e-57 226.9 264 52.3
Zm00001eb311320 Zea mays HOM05D004981 ORTHO05D005635 6.1e-57 225.7 327 44.6
Hund00058 Selenicereus undatus HOM05D004981 ORTHO05D005635 4.0e-56 223.0 326 44.8
Sp6g33940 Schrenkiella parvula HOM05D004981 ORTHO05D005635 4.4e-55 219.5 272 50.7
Prupe.5G160300 Prunus persica HOM05D004981 ORTHO05D005635 5.7e-55 219.2 355 44.2
MD14G1166200 Malus domestica HOM05D004981 ORTHO05D005635 4.8e-54 216.1 344 43.9
Pp3c22_4170 Physcomitrium patens HOM05D004981 ORTHO05D005635 8.2e-54 215.3 330 42.7
PSO541G0435 Papaver somniferum HOM05D004981 ORTHO05D005635 4.5e-52 209.5 336 42.9
Medtr5g017190 Medicago truncatula HOM05D004981 ORTHO05D005635 5.9e-52 209.1 236 54.2
HPP92_013108 Vanilla planifolia HOM05D004981 ORTHO05D005635 5.9e-52 209.1 230 53.0
Aqoxy6G00803 Aquilegia oxysepala HOM05D004981 ORTHO05D005635 1.0e-51 208.4 320 45.6
BcaB08g37209 Brassica carinata HOM05D004981 ORTHO05D005635 1.3e-51 208.0 242 50.8
COL.COLO4_15286 Corchorus olitorius HOM05D004981 ORTHO05D005635 4.2e-50 203.0 260 53.1
Carub.0006s0794 Capsella rubella HOM05D004981 ORTHO05D005635 3.6e-49 199.9 290 46.9
Thhalv10013574m.g Eutrema salsugineum HOM05D004981 ORTHO05D005635 6.1e-49 199.1 326 43.9
AT5G09390 Arabidopsis thaliana HOM05D004981 ORTHO05D005635 1.0e-48 198.4 233 52.8
AL6G19780 Arabidopsis lyrata HOM05D004981 ORTHO05D005635 4.0e-48 196.4 315 44.8
Os09g0372400 Oryza sativa ssp. japonica HOM05D004981 ORTHO05D005635 2.4e-45 187.2 232 47.0
AagrBONN_evm.TU.Sc2ySwM_117.1804 Anthoceros agrestis HOM05D004981 ORTHO05D005635 4.5e-44 183.0 232 47.4
CARHR204020 Cardamine hirsuta HOM05D004981 ORTHO05D005635 7.7e-44 182.2 293 42.0
SMO356G0631 Selaginella moellendorffii HOM05D004981 ORTHO05D005635 4.2e-42 176.4 224 45.1
CBR_g31506 Chara braunii HOM05D004981 ORTHO05D005635 1.6e-41 174.5 285 40.4
Ah.01g009580 Amaranthus hybridus HOM05D004981 ORTHO05D005635 1.1e-37 161.8 264 40.5
Lj1g0016172 Lotus japonicus HOM05D004981 ORTHO05D005635 9.1e-37 158.7 312 36.5
HPP92_013085 Vanilla planifolia HOM05D004981 ORTHO05D005635 2.5e-34 150.6 149 54.4
FAN08G2142 Fragaria x ananassa HOM05D004981 ORTHO05D005635 8.0e-33 145.6 311 40.5
FAN21G1455 Fragaria x ananassa HOM05D004981 ORTHO05D005635 2.6e-23 114.0 235 40.9
VMungo1383G1991 Vigna mungo HOM05D004981 ORTHO05D005635 7.5e-23 112.5 142 47.2
RcHm_v2.0_Chr7g0224681 Rosa chinensis HOM05D004981 ORTHO05D005635 6.4e-22 109.4 215 40.5
Thecc.06G050700 Theobroma cacao HOM05D004981 ORTHO05D005635 3.5e-20 103.6 85 56.5
FvH4_4g13240 Fragaria vesca HOM05D004981 ORTHO05D005635 4.3e-18 96.7 141 48.2
Ah.01g009610 Amaranthus hybridus HOM05D004981 ORTHO05D005635 6.8e-16 89.4 134 47.8
FAN12G0625 Fragaria x ananassa HOM05D004981 ORTHO05D005635 2.6e-15 87.4 91 58.2
Lsat_1_v5_gn_5_82561 Lactuca sativa HOM05D004981 ORTHO05D005635 1.7e-14 84.7 84 64.3
PRCOL_00000241 Prasinoderma coloniale HOM05D004981 ORTHO05D005635 5.4e-13 79.7 200 28.5
Peaxi162Scf00152g01023 Petunia axillaris HOM05D004981 ORTHO05D005635 6.6e-11 72.8 49 69.4
C05p07220 Brassica napus HOM05D001624 ORTHO05D005635 1.9e-10 71.2 211 28.9
Cre06.g299450 Chlamydomonas reinhardtii HOM05D004981 ORTHO05D005635 3.3e-10 70.5 139 37.4
CDE10G1193 Ceratophyllum demersum HOM05D004981 ORTHO05D005635 4.4e-07 60.1 84 46.4
VMungo1383G0650 Vigna mungo HOM05D004981 ORTHO05D005635 9.9e-07 58.9 130 36.2
Dinv07233 Davidia involucrata HOM05D004981 ORTHO05D005635 2.9e-06 57.4 68 45.6
FAN17G2803 Fragaria x ananassa HOM05D004981 ORTHO05D005635 3.7e-06 57.0 133 36.1
BraA08t32917Z Brassica rapa HOM05D004981 ORTHO05D005635 8.4e-06 55.8 101 37.6


User provided reference genes

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