Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0008050g0040 Nicotiana tabacum HOM05D003942 ORTHO05D004527 7.1e-237 823.5 418 100.0
Nitab4.5_0001702g0090 Nicotiana tabacum HOM05D003942 ORTHO05D004527 2.4e-224 781.9 418 94.7
CAN.G399.13 Capsicum annuum HOM05D003942 ORTHO05D004527 2.4e-200 702.2 421 85.0
Peaxi162Scf00191g01422 Petunia axillaris HOM05D003942 ORTHO05D004527 4.5e-199 698.0 421 85.3
Sopen05g028240 Solanum pennellii HOM05D003942 ORTHO05D004527 2.2e-198 695.7 420 84.8
Solyc05g049900.3 Solanum lycopersicum HOM05D003942 ORTHO05D004527 3.8e-198 694.9 420 84.8
PGSC0003DMG400021644 Solanum tuberosum HOM05D003942 ORTHO05D004527 1.9e-197 692.6 420 84.0
Dinv32469 Davidia involucrata HOM05D003942 ORTHO05D004527 2.2e-169 599.4 410 77.3
Potri.014G082900 Populus trichocarpa HOM05D003942 ORTHO05D004527 1.4e-163 580.1 405 74.8
TAR629G1832 Trochodendron aralioides HOM05D003942 ORTHO05D004527 8.9e-163 577.4 412 75.0
Sabra14G0060100 Salix brachista HOM05D003942 ORTHO05D004527 2.2e-161 572.8 405 74.1
CSS0049620 Camellia sinensis var. sinensis HOM05D003942 ORTHO05D004527 3.2e-160 568.9 418 72.2
CSS0041241 Camellia sinensis var. sinensis HOM05D003942 ORTHO05D004527 1.2e-159 567.0 418 72.0
Thecc.01G360500 Theobroma cacao HOM05D003942 ORTHO05D004527 2.3e-158 562.8 413 72.6
Gorai.007G098800 Gossypium raimondii HOM05D003942 ORTHO05D004527 1.1e-157 560.5 366 77.3
Manes.05G036000 Manihot esculenta HOM05D003942 ORTHO05D004527 3.3e-157 558.9 403 72.7
TWI59G0555 Tripterygium wilfordii HOM05D003942 ORTHO05D004527 4.3e-157 558.5 408 71.6
Duzib133G0298 Durio zibethinus HOM05D003942 ORTHO05D004527 5.6e-157 558.1 407 72.2
Actinidia10022 Actinidia chinensis HOM05D003942 ORTHO05D004527 9.5e-157 557.4 366 76.5
CANSAT56G2580 Cannabis sativa HOM05D003942 ORTHO05D004527 1.2e-156 557.0 407 73.5
COL.COLO4_12700 Corchorus olitorius HOM05D003942 ORTHO05D004527 1.6e-156 556.6 414 70.3
Rhsim07G0016400 Rhododendron simsii HOM05D003942 ORTHO05D004527 4.7e-156 555.1 414 71.5
TAR375G0209 Trochodendron aralioides HOM05D003942 ORTHO05D004527 1.4e-155 553.5 410 70.5
Gohir.A11G088200 Gossypium hirsutum HOM05D003942 ORTHO05D004527 1.8e-155 553.1 400 72.5
Cc02_g37870 Coffea canephora HOM05D003942 ORTHO05D004527 6.8e-155 551.2 411 69.6
MSTRG.4859 Avicennia marina HOM05D003942 ORTHO05D004527 8.9e-155 550.8 385 73.8
Migut.N01440 Erythranthe guttata HOM05D003942 ORTHO05D004527 1.2e-154 550.4 409 69.2
Ciclev10020374m.g Citrus clementina HOM05D003942 ORTHO05D004527 1.5e-154 550.1 400 71.2
TWI23G1005 Tripterygium wilfordii HOM05D003942 ORTHO05D004527 2.6e-154 549.3 408 71.1
Cpa.g.sc18.243 Carica papaya HOM05D003942 ORTHO05D004527 3.4e-154 548.9 415 70.1
QL08p049021 Quercus lobata HOM05D003942 ORTHO05D004527 9.8e-154 547.4 420 69.3
HanXRQChr16g0522811 Helianthus annuus HOM05D003942 ORTHO05D004527 1.9e-152 543.1 400 71.2
GSVIVG01026895001 Vitis vinifera HOM05D003942 ORTHO05D004527 5.0e-150 535.0 332 81.3
Lj9A582T85 Lonicera japonica HOM05D003942 ORTHO05D004527 1.5e-149 533.5 487 61.2
SGA_v2.0_scaffold43G16422 Striga asiatica HOM05D003942 ORTHO05D004527 1.5e-149 533.5 385 71.9
THA.LOC104817290 Tarenaya hassleriana HOM05D003942 ORTHO05D004527 1.5e-149 533.5 410 69.5
Atru.chr5.464 Acer truncatum HOM05D003942 ORTHO05D004527 1.9e-149 533.1 418 67.0
Lsat_1_v5_gn_4_36221 Lactuca sativa HOM05D003942 ORTHO05D004527 1.9e-149 533.1 377 72.1
CiPaw.01G059900 Carya illinoinensis HOM05D003942 ORTHO05D004527 3.3e-149 532.3 408 69.9
Cfa003938 Carpinus fangiana HOM05D003942 ORTHO05D004527 4.3e-149 531.9 411 69.3
SalBow5G2271 Salvia bowleyana HOM05D003942 ORTHO05D004527 9.5e-149 530.8 407 69.8
DCAR_015969 Daucus carota HOM05D003942 ORTHO05D004527 3.6e-148 528.9 408 68.6
Eucgr.E00157 Eucalyptus grandis HOM05D003942 ORTHO05D004527 4.7e-148 528.5 402 68.7
Prupe.2G168100 Prunus persica HOM05D003942 ORTHO05D004527 1.1e-147 527.3 415 67.7
FAN01G0250 Fragaria x ananassa HOM05D003942 ORTHO05D004527 3.1e-147 525.8 376 70.7
Oeu020562.1 Olea europaea HOM05D003942 ORTHO05D004527 3.1e-147 525.8 331 80.1
RcHm_v2.0_Chr1g0355071 Rosa chinensis HOM05D003942 ORTHO05D004527 4.0e-147 525.4 377 70.6
Hund27285 Selenicereus undatus HOM05D003942 ORTHO05D004527 4.0e-147 525.4 411 67.4
PGR042G2566 Punica granatum HOM05D003942 ORTHO05D004527 6.8e-147 524.6 405 68.1
Aqoxy5G04009 Aquilegia oxysepala HOM05D003942 ORTHO05D004527 8.9e-147 524.2 414 66.4
FAN10G4090 Fragaria x ananassa HOM05D003942 ORTHO05D004527 3.4e-146 522.3 376 70.7
CiPaw.02G030000 Carya illinoinensis HOM05D003942 ORTHO05D004527 5.8e-146 521.5 359 73.0
Lalb_Chr03g0038211 Lupinus albus HOM05D003942 ORTHO05D004527 5.8e-146 521.5 405 67.9
MD01G1057600 Malus domestica HOM05D003942 ORTHO05D004527 7.5e-146 521.2 396 68.9
AUR62004344 Chenopodium quinoa HOM05D003942 ORTHO05D004527 1.3e-145 520.4 364 70.1
FvH4_7g14170 Fragaria vesca HOM05D003942 ORTHO05D004527 2.2e-145 519.6 413 66.6
MBI18_g25515_MAGBIO Magnolia biondii HOM05D003942 ORTHO05D004527 2.9e-145 519.2 405 67.7
MD07G1139000 Malus domestica HOM05D003942 ORTHO05D004527 6.4e-145 518.1 412 66.7
FAN03G2475 Fragaria x ananassa HOM05D003942 ORTHO05D004527 8.3e-145 517.7 414 66.2
FAN06G2309 Fragaria x ananassa HOM05D003942 ORTHO05D004527 1.4e-144 516.9 413 66.1
FAN06G3470 Fragaria x ananassa HOM05D003942 ORTHO05D004527 1.4e-144 516.9 413 66.6
A04p01160 Brassica napus HOM05D003942 ORTHO05D004527 1.9e-144 516.5 357 73.4
BraA04t15833Z Brassica rapa HOM05D003942 ORTHO05D004527 1.9e-144 516.5 357 73.4
HanXRQChr13g0426521 Helianthus annuus HOM05D003942 ORTHO05D004527 3.2e-144 515.8 395 67.1
C04p31390 Brassica napus HOM05D003942 ORTHO05D004527 7.1e-144 514.6 374 70.9
BcaC07g40631 Brassica carinata HOM05D003942 ORTHO05D004527 1.2e-143 513.8 351 74.4
BraA04t18872Z Brassica rapa HOM05D003942 ORTHO05D004527 1.6e-143 513.5 409 65.0
AUR62022550 Chenopodium quinoa HOM05D003942 ORTHO05D004527 2.1e-143 513.1 360 69.7
BolC4t24688H Brassica oleracea HOM05D003942 ORTHO05D004527 2.7e-143 512.7 374 70.6
BolC4t28689H Brassica oleracea HOM05D003942 ORTHO05D004527 3.5e-143 512.3 409 64.5
Aa31LG10G15570 Aethionema arabicum HOM05D003942 ORTHO05D004527 4.6e-143 511.9 402 67.2
C04p71910 Brassica napus HOM05D003942 ORTHO05D004527 1.0e-142 510.8 409 64.3
Psat4g154400 Pisum sativum HOM05D003942 ORTHO05D004527 1.0e-142 510.8 410 66.3
Sp5g02060 Schrenkiella parvula HOM05D003942 ORTHO05D004527 1.7e-142 510.0 356 72.2
A09p53400 Brassica napus HOM05D003942 ORTHO05D004527 3.0e-142 509.2 406 66.3
Thhalv10006010m.g Eutrema salsugineum HOM05D003942 ORTHO05D004527 3.0e-142 509.2 354 72.9
CDE09G0298 Ceratophyllum demersum HOM05D003942 ORTHO05D004527 3.9e-142 508.8 406 65.3
Lsat_1_v5_gn_3_137060 Lactuca sativa HOM05D003942 ORTHO05D004527 3.9e-142 508.8 402 67.7
VMungo0331G0006 Vigna mungo HOM05D003942 ORTHO05D004527 5.1e-142 508.4 355 72.1
AL5G43590 Arabidopsis lyrata HOM05D003942 ORTHO05D004527 6.6e-142 508.1 404 66.8
A04p34110 Brassica napus HOM05D003942 ORTHO05D004527 6.6e-142 508.1 409 64.8
Carub.0005s2799 Capsella rubella HOM05D003942 ORTHO05D004527 1.1e-141 507.3 406 66.7
Lalb_Chr04g0256871 Lupinus albus HOM05D003942 ORTHO05D004527 2.5e-141 506.1 361 70.9
BolC8t51203H Brassica oleracea HOM05D003942 ORTHO05D004527 4.3e-141 505.4 402 66.2
BraA09t40766Z Brassica rapa HOM05D003942 ORTHO05D004527 7.3e-141 504.6 406 65.5
C08p36210 Brassica napus HOM05D003942 ORTHO05D004527 9.5e-141 504.2 402 65.9
Glyma.03G010800 Glycine max HOM05D003942 ORTHO05D004527 9.5e-141 504.2 407 64.6
Phvul.010G097300 Phaseolus vulgaris HOM05D003942 ORTHO05D004527 9.5e-141 504.2 404 66.3
AL4G45080 Arabidopsis lyrata HOM05D003942 ORTHO05D004527 1.6e-140 503.4 407 65.1
Glyma.07G071900 Glycine max HOM05D003942 ORTHO05D004527 3.6e-140 502.3 405 64.9
Thhalv10001467m.g Eutrema salsugineum HOM05D003942 ORTHO05D004527 4.7e-140 501.9 407 64.1
Carub.0004s2857 Capsella rubella HOM05D003942 ORTHO05D004527 8.1e-140 501.1 412 65.0
Ah.05g180690 Amaranthus hybridus HOM05D003942 ORTHO05D004527 2.3e-139 499.6 418 61.5
Sp4g27940 Schrenkiella parvula HOM05D003942 ORTHO05D004527 2.3e-139 499.6 407 64.9
Aa31LG1G27300 Aethionema arabicum HOM05D003942 ORTHO05D004527 4.0e-139 498.8 406 64.3
BcaC02g07065 Brassica carinata HOM05D003942 ORTHO05D004527 1.5e-138 496.9 410 64.6
arahy.Tifrunner.gnm1.ann1.2H0UDK Arachis hypogaea HOM05D003942 ORTHO05D004527 3.4e-138 495.7 426 62.4
arahy.Tifrunner.gnm1.ann1.Q5YAPI Arachis hypogaea HOM05D003942 ORTHO05D004527 4.4e-138 495.4 426 62.4
BcaC02g10219 Brassica carinata HOM05D003942 ORTHO05D004527 1.7e-137 493.4 374 69.3
Ca_23643_v3 Cicer arietinum L. HOM05D003942 ORTHO05D004527 1.9e-136 490.0 354 68.9
Haze_15488 Corylus avellana HOM05D003942 ORTHO05D004527 7.1e-136 488.0 411 65.5
CARHR141140 Cardamine hirsuta HOM05D003942 ORTHO05D004527 2.1e-135 486.5 406 63.5
ECA240G2096 Erigeron canadensis HOM05D003942 ORTHO05D004527 2.7e-135 486.1 331 75.2
Lj3g0006137 Lotus japonicus HOM05D003942 ORTHO05D004527 3.5e-135 485.7 410 63.2
BcaC09g52244 Brassica carinata HOM05D003942 ORTHO05D004527 6.0e-135 485.0 348 71.6
TPR.G15979 Trifolium pratense HOM05D003942 ORTHO05D004527 8.6e-134 481.1 332 72.9
Medtr8g031000 Medicago truncatula HOM05D003942 ORTHO05D004527 1.5e-133 480.3 335 72.5
unitig_8.g3394 Utricularia gibba HOM05D003942 ORTHO05D004527 5.8e-130 468.4 405 60.5
EL10Ac1g00428 Beta vulgaris HOM05D003942 ORTHO05D004527 4.8e-124 448.7 304 73.4
AT2G45870 Arabidopsis thaliana HOM05D003942 ORTHO05D004527 6.2e-124 448.4 350 66.6
Sc23g0002980 Simmondsia chinensis HOM05D003942 ORTHO05D004527 8.1e-124 448.0 338 70.7
ECA234G1137 Erigeron canadensis HOM05D003942 ORTHO05D004527 1.0e-118 431.0 291 76.3
Os03g0106000 Oryza sativa ssp. japonica HOM05D003942 ORTHO05D004527 9.0e-115 417.9 376 59.6
HPP92_006558 Vanilla planifolia HOM05D003942 ORTHO05D004527 9.9e-114 414.5 358 60.1
Zm00001eb000510 Zea mays HOM05D003942 ORTHO05D004527 2.3e-110 403.3 391 55.5
SEGI_35716 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 1.5e-109 400.6 332 60.8
Duzib138G1448 Durio zibethinus HOM05D003942 ORTHO05D004527 1.1e-107 394.4 413 56.2
Pp3c4_15850 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.4e-107 393.3 346 57.5
Nn1g01512 Nelumbo nucifera HOM05D003942 ORTHO05D004527 6.9e-107 391.7 423 56.0
SEGI_25793 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 2.0e-106 390.2 351 56.4
Pp3c3_22870 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.7e-105 387.1 337 57.9
Mapoly0071s0037 Marchantia polymorpha HOM05D003942 ORTHO05D004527 7.4e-101 371.7 344 54.7
vmacro13277 Vaccinium macrocarpon HOM05D003942 ORTHO05D004527 2.9e-97 359.8 422 51.9
SMO364G0338 Selaginella moellendorffii HOM05D003942 ORTHO05D004527 2.7e-95 353.2 312 53.5
Gohir.D11G092500 Gossypium hirsutum HOM05D003942 ORTHO05D004527 2.5e-93 346.7 236 75.0
AT3G61320 Arabidopsis thaliana HOM05D003942 ORTHO05D004527 8.8e-86 321.6 277 62.1
ATR0680G085 Amborella trichopoda HOM05D003942 ORTHO05D004527 4.1e-75 286.2 333 49.8
Mapoly0009s0131 Marchantia polymorpha HOM05D003942 ORTHO05D004527 7.0e-75 285.4 324 43.2
AagrBONN_evm.TU.Sc2ySwM_228.958 Anthoceros agrestis HOM05D003942 ORTHO05D004527 6.5e-73 278.9 393 41.2
AagrBONN_evm.TU.Sc2ySwM_344.3805 Anthoceros agrestis HOM05D003942 ORTHO05D004527 1.2e-71 274.6 307 45.3
Pp3c2_13700 Physcomitrium patens HOM05D003942 ORTHO05D004527 3.3e-69 266.5 328 42.1
FAN10G2852 Fragaria x ananassa HOM05D003942 ORTHO05D004527 6.3e-68 262.3 275 56.4
AagrBONN_evm.TU.Sc2ySwM_362.1957 Anthoceros agrestis HOM05D003942 ORTHO05D004527 1.0e-65 255.0 293 44.7
Pp3c1_3670 Physcomitrium patens HOM05D003942 ORTHO05D004527 5.5e-64 249.2 285 42.8
CARHR171630 Cardamine hirsuta HOM05D003942 ORTHO05D004527 3.6e-63 246.5 227 60.4
MD01G1202300 Malus domestica HOM05D003942 ORTHO05D004527 4.7e-63 246.1 253 54.9
CBR_g44610 Chara braunii HOM05D000505 ORTHO05D000301 1.4e-62 244.6 300 42.7
Pp3c1_34560 Physcomitrium patens HOM05D003942 ORTHO05D004527 4.0e-62 243.0 290 43.1
Pp3c1_34600 Physcomitrium patens HOM05D003942 ORTHO05D004527 5.2e-62 242.7 285 42.5
Pp3c11_9440 Physcomitrium patens HOM05D003942 ORTHO05D004527 8.8e-62 241.9 297 38.7
Oeu020563.1 Olea europaea HOM05D003942 ORTHO05D004527 1.5e-61 241.1 149 83.9
HPP92_011356 Vanilla planifolia HOM05D003942 ORTHO05D004527 2.0e-61 240.7 181 65.2
Pp3c6_24250 Physcomitrium patens HOM05D003942 ORTHO05D004527 4.5e-58 229.6 290 40.7
C05p09980 Brassica napus HOM05D003942 ORTHO05D004527 1.9e-56 224.2 201 59.2
Pp3c14_6660 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.9e-56 224.2 296 40.2
AagrBONN_evm.TU.Sc2ySwM_228.2628 Anthoceros agrestis HOM05D003942 ORTHO05D004527 8.6e-49 198.7 153 58.2
CBR_g772 Chara braunii HOM05D003942 ORTHO05D004527 8.6e-49 198.7 318 36.5
Cre16.g663450 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 4.7e-47 193.0 334 35.0
Cre16.g662600 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.4e-46 191.4 311 36.3
Cre16.g663400 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 4.0e-46 189.9 313 37.1
FAN10G0144 Fragaria x ananassa HOM05D003942 ORTHO05D004527 1.5e-45 188.0 187 59.9
Cre06.g277650 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 4.9e-44 183.0 328 32.3
SEGI_34263 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 1.8e-43 181.0 162 58.6
CBR_g38187 Chara braunii HOM05D003942 ORTHO05D004527 2.3e-41 174.1 218 44.0
HPP92_011355 Vanilla planifolia HOM05D003942 ORTHO05D004527 8.6e-41 172.2 139 64.0
Cre11.g474700 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.9e-40 171.0 320 32.5
Cre06.g261750 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 6.2e-39 166.0 317 29.0
PRCOL_00004040 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 2.5e-32 144.1 303 32.3
Cre01.g038100 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 7.3e-32 142.5 338 29.0
BcaB02g11262 Brassica carinata HOM05D003942 ORTHO05D004527 4.7e-31 139.8 119 58.0
Cre07.g355300 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 5.8e-29 132.9 309 27.5
Oeu020564.1 Olea europaea HOM05D003942 ORTHO05D004527 5.8e-29 132.9 77 85.7
MCO01G232 Micromonas commoda HOM05D003942 ORTHO05D004527 1.9e-27 127.9 338 28.4
FAN10G3156 Fragaria x ananassa HOM05D000449 ORTHO05D004527 4.1e-27 126.7 125 59.2
PRCOL_00003097 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 9.2e-27 125.6 289 30.8
Cre03.g199600 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 3.5e-26 123.6 221 30.3
Pp3c11_6680 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.3e-25 121.7 101 52.5
Pp3c6_17920 Physcomitrium patens HOM05D003942 ORTHO05D004527 5.1e-25 119.8 194 35.1
SEGI_01331 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 8.6e-25 119.0 142 47.9
PRCOL_00006054 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 1.5e-24 118.2 293 27.6
PRCOL_00005764 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 3.1e-22 110.5 325 28.3
PRCOL_00003548 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 6.8e-22 109.4 312 27.6
PRCOL_00004398 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 1.1e-19 102.1 314 28.0
MCO01G007 Micromonas commoda HOM05D003942 ORTHO05D004527 2.1e-18 97.8 299 27.4
MCO09G357 Micromonas commoda HOM05D003942 ORTHO05D004527 1.6e-15 88.2 351 25.6
PSO478G4509 Papaver somniferum HOM05D003942 ORTHO05D004527 2.9e-12 77.4 60 66.7
Pp3c20_3390 Physcomitrium patens HOM05D003942 ORTHO05D004527 3.9e-09 67.0 90 41.1
Pp3c3_14710 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.6e-07 61.6 146 29.5


User provided reference genes

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