Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0008050g0010 Nicotiana tabacum HOM05D005367 ORTHO05D006328 1.8e-93 345.9 177 100.0
Nitab4.5_0001702g0150 Nicotiana tabacum HOM05D005367 ORTHO05D006328 3.4e-79 298.5 171 92.4
Peaxi162Scf00191g01425 Petunia axillaris HOM05D005367 ORTHO05D006328 3.1e-64 248.8 168 79.2
Sopen05g028210 Solanum pennellii HOM05D005367 ORTHO05D006328 5.8e-63 244.6 183 77.0
Solyc05g049880.3 Solanum lycopersicum HOM05D005367 ORTHO05D006328 1.3e-62 243.4 183 76.5
PGSC0003DMG400021656 Solanum tuberosum HOM05D005367 ORTHO05D006328 1.9e-58 229.6 183 73.8
Dinv43805 Davidia involucrata HOM05D005367 ORTHO05D006328 4.4e-39 165.2 172 54.1
Hma1.2p1_0001F.1_g001380 Hydrangea macrophylla HOM05D005367 ORTHO05D006328 7.1e-37 157.9 178 51.1
Haze_15487 Corylus avellana HOM05D005367 ORTHO05D006328 1.7e-35 153.3 175 50.3
CiPaw.02G029900 Carya illinoinensis HOM05D005367 ORTHO05D006328 2.5e-34 149.4 177 46.3
COL.COLO4_12698 Corchorus olitorius HOM05D005367 ORTHO05D006328 3.3e-34 149.1 161 49.7
SalBow3G2019 Salvia bowleyana HOM05D005367 ORTHO05D006328 7.3e-34 147.9 165 52.7
Cc02_g37850 Coffea canephora HOM05D005367 ORTHO05D006328 1.3e-33 147.1 168 47.6
QL08p049031 Quercus lobata HOM05D005367 ORTHO05D006328 1.6e-33 146.7 165 50.3
CSS0033809 Camellia sinensis var. sinensis HOM05D005367 ORTHO05D006328 4.8e-33 145.2 163 50.9
Oeu056369.1 Olea europaea HOM05D005367 ORTHO05D006328 6.2e-33 144.8 163 49.7
vmacro13291 Vaccinium macrocarpon HOM05D005367 ORTHO05D006328 6.2e-33 144.8 172 50.6
MSTRG.20826 Avicennia marina HOM05D005367 ORTHO05D006328 1.1e-32 144.1 166 48.8
Gohir.D11G092400 Gossypium hirsutum HOM05D005367 ORTHO05D006328 1.8e-32 143.3 165 50.3
Gorai.007G098700 Gossypium raimondii HOM05D005367 ORTHO05D006328 2.4e-32 142.9 165 50.3
TWI14G0016 Tripterygium wilfordii HOM05D005367 ORTHO05D006328 3.1e-32 142.5 176 50.6
Cfa003939 Carpinus fangiana HOM05D005367 ORTHO05D006328 5.3e-32 141.7 179 48.0
Ciclev10021865m.g Citrus clementina HOM05D005367 ORTHO05D006328 6.9e-32 141.4 182 46.7
SGA_v2.0_scaffold11G05663 Striga asiatica HOM05D000368 ORTHO05D006328 6.9e-32 141.4 165 47.3
Gohir.D08G152300 Gossypium hirsutum HOM05D005367 ORTHO05D006328 1.5e-31 140.2 175 45.1
Gohir.A11G088100 Gossypium hirsutum HOM05D005367 ORTHO05D006328 2.0e-31 139.8 165 49.7
CSS0040093 Camellia sinensis var. sinensis HOM05D005367 ORTHO05D006328 2.6e-31 139.4 176 50.0
Nn1g01501 Nelumbo nucifera HOM05D005367 ORTHO05D006328 2.6e-31 139.4 189 43.9
GSVIVG01026893001 Vitis vinifera HOM05D005367 ORTHO05D006328 2.6e-31 139.4 161 53.4
MD01G1057500 Malus domestica HOM05D005367 ORTHO05D006328 1.3e-30 137.1 177 46.3
Duzib133G0249 Durio zibethinus HOM05D005367 ORTHO05D006328 2.2e-30 136.3 162 46.3
Potri.014G082600 Populus trichocarpa HOM05D005367 ORTHO05D006328 2.2e-30 136.3 163 47.2
Gorai.004G158200 Gossypium raimondii HOM05D005367 ORTHO05D006328 3.8e-30 135.6 175 44.6
Potri.002G158500 Populus trichocarpa HOM05D005367 ORTHO05D006328 3.8e-30 135.6 163 47.9
Thecc.01G360700 Theobroma cacao HOM05D005367 ORTHO05D006328 3.8e-30 135.6 162 48.8
Actinidia20916 Actinidia chinensis HOM05D005367 ORTHO05D006328 4.9e-30 135.2 162 49.4
MD07G1139200 Malus domestica HOM05D005367 ORTHO05D006328 4.9e-30 135.2 177 45.2
PGR031G3282 Punica granatum HOM05D005367 ORTHO05D006328 6.4e-30 134.8 165 45.5
Cpa.g.sc18.245 Carica papaya HOM05D005367 ORTHO05D006328 1.1e-29 134.0 182 43.4
Lj9A582T87 Lonicera japonica HOM05D005367 ORTHO05D006328 1.1e-29 134.0 180 46.7
Prupe.2G167900 Prunus persica HOM05D005367 ORTHO05D006328 1.9e-29 133.3 174 44.3
ClCG06G003800 Citrullus lanatus HOM05D005367 ORTHO05D006328 4.2e-29 132.1 185 44.9
Manes.01G258500 Manihot esculenta HOM05D005367 ORTHO05D006328 4.2e-29 132.1 164 43.3
RcHm_v2.0_Chr1g0355051 Rosa chinensis HOM05D005367 ORTHO05D006328 4.2e-29 132.1 186 41.4
Migut.B01742 Erythranthe guttata HOM05D005367 ORTHO05D006328 9.3e-29 131.0 167 44.9
Nn6g33454 Nelumbo nucifera HOM05D005367 ORTHO05D006328 1.2e-28 130.6 176 46.0
PGR042G0868 Punica granatum HOM05D005367 ORTHO05D006328 1.3e-27 127.1 194 42.8
TAR636G2389 Trochodendron aralioides HOM05D003133 ORTHO05D003642 1.3e-27 127.1 180 41.7
Glyma.18G231900 Glycine max HOM05D005367 ORTHO05D006328 3.9e-27 125.6 174 40.8
TAR375G0799 Trochodendron aralioides HOM05D005367 ORTHO05D006328 3.9e-27 125.6 168 44.0
Manes.05G036200 Manihot esculenta HOM05D005367 ORTHO05D006328 1.1e-26 124.0 162 44.4
FAN01G2456 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.5e-26 123.6 177 42.4
FAN03G1221 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.5e-26 123.6 177 42.4
RcHm_v2.0_Chr1g0354801 Rosa chinensis HOM05D005367 ORTHO05D006328 1.5e-26 123.6 186 40.3
Sed0017642 Sechium edule HOM05D005367 ORTHO05D006328 1.5e-26 123.6 161 44.7
Gohir.A08G130800 Gossypium hirsutum HOM05D005367 ORTHO05D006328 3.3e-26 122.5 180 41.7
Lalb_Chr01g0011531 Lupinus albus HOM05D005367 ORTHO05D006328 4.3e-26 122.1 162 43.8
Lalb_Chr24g0401631 Lupinus albus HOM05D005367 ORTHO05D006328 5.6e-26 121.7 162 43.8
arahy.Tifrunner.gnm1.ann1.D8DQXR Arachis hypogaea HOM05D005367 ORTHO05D006328 1.6e-25 120.2 165 41.8
FAN10G0042 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.6e-25 120.2 172 42.4
Lj1g0004821 Lotus japonicus HOM05D005367 ORTHO05D006328 1.6e-25 120.2 177 41.8
ECA234G3275 Erigeron canadensis HOM05D005367 ORTHO05D006328 3.7e-25 119.0 185 41.6
arahy.Tifrunner.gnm1.ann1.G5US7K Arachis hypogaea HOM05D005367 ORTHO05D006328 4.8e-25 118.6 165 41.8
FvH4_7g14150 Fragaria vesca HOM05D005367 ORTHO05D006328 1.1e-24 117.5 177 41.2
MELO3C021217.2 Cucumis melo HOM05D005367 ORTHO05D006328 1.4e-24 117.1 180 41.1
Duzib205G1257 Durio zibethinus HOM05D005367 ORTHO05D006328 1.4e-24 117.1 192 39.6
FAN06G0563 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.4e-24 117.1 177 41.2
HanXRQChr16g0522831 Helianthus annuus HOM05D005367 ORTHO05D006328 1.4e-24 117.1 178 44.4
PSO782G1827 Papaver somniferum HOM05D005367 ORTHO05D006328 1.4e-24 117.1 187 41.7
Atru.chr5.466 Acer truncatum HOM05D005367 ORTHO05D006328 2.4e-24 116.3 172 38.4
CANSAT56G3377 Cannabis sativa HOM05D005367 ORTHO05D006328 2.4e-24 116.3 174 43.7
Ca_07909_v3 Cicer arietinum L. HOM05D005367 ORTHO05D006328 2.4e-24 116.3 175 37.7
CsaV3_6G000470 Cucumis sativus L. HOM05D005367 ORTHO05D006328 2.4e-24 116.3 162 42.0
Eucgr.D02282 Eucalyptus grandis HOM05D005367 ORTHO05D006328 5.3e-24 115.2 174 43.1
Manes.06G148200 Manihot esculenta HOM05D005367 ORTHO05D006328 5.3e-24 115.2 167 41.9
Sc01g0003360 Simmondsia chinensis HOM05D005367 ORTHO05D006328 5.3e-24 115.2 169 40.2
Hund16930 Selenicereus undatus HOM05D005367 ORTHO05D006328 6.9e-24 114.8 170 42.9
unitig_61.g26388 Utricularia gibba HOM05D005367 ORTHO05D006328 9.0e-24 114.4 166 43.4
EL10Ac1g00429 Beta vulgaris HOM05D005367 ORTHO05D006328 2.0e-23 113.2 163 41.1
Sp1g00570 Schrenkiella parvula HOM05D005367 ORTHO05D006328 2.0e-23 113.2 174 42.0
PSO478G0766 Papaver somniferum HOM05D005367 ORTHO05D006328 2.6e-23 112.8 188 41.5
THA.LOC104801446 Tarenaya hassleriana HOM05D005367 ORTHO05D006328 3.4e-23 112.5 162 41.4
Aqoxy7G00339 Aquilegia oxysepala HOM05D005367 ORTHO05D006328 4.5e-23 112.1 147 45.6
TWI59G0064 Tripterygium wilfordii HOM05D005367 ORTHO05D006328 5.8e-23 111.7 171 39.2
Lsat_1_v5_gn_4_36280 Lactuca sativa HOM05D005367 ORTHO05D006328 1.3e-22 110.5 181 41.4
MD01G1202200 Malus domestica HOM05D005367 ORTHO05D006328 1.3e-22 110.5 157 42.7
Eucgr.E00158 Eucalyptus grandis HOM05D005367 ORTHO05D006328 3.8e-22 109.0 165 41.8
C08p53830 Brassica napus HOM05D006991 ORTHO05D009188 4.9e-22 108.6 173 41.6
BolC8t52897H Brassica oleracea HOM05D000368 ORTHO05D000289 4.9e-22 108.6 173 41.6
RcHm_v2.0_Chr1g0377581 Rosa chinensis HOM05D005367 ORTHO05D006328 4.9e-22 108.6 191 35.6
TPR.G37815 Trifolium pratense HOM05D005367 ORTHO05D006328 4.9e-22 108.6 169 39.6
VMungo1383G2792 Vigna mungo HOM05D005367 ORTHO05D006328 8.4e-22 107.8 165 38.2
Atru.chr1.441 Acer truncatum HOM05D005367 ORTHO05D006328 1.2e-20 104.0 161 39.8
Psat3g109400 Pisum sativum HOM05D005367 ORTHO05D006328 1.2e-20 104.0 173 37.0
BraA09t42260Z Brassica rapa HOM05D005367 ORTHO05D006328 1.6e-20 103.6 168 39.3
COL.COLO4_14330 Corchorus olitorius HOM05D005367 ORTHO05D006328 7.9e-20 101.3 189 36.5
Ciclev10006075m.g Citrus clementina HOM05D005367 ORTHO05D006328 2.3e-19 99.8 175 36.6
Ah.05g180710 Amaranthus hybridus HOM05D005367 ORTHO05D006328 3.0e-19 99.4 167 38.3
Medtr7g077380 Medicago truncatula HOM05D005367 ORTHO05D006328 3.9e-19 99.0 174 35.1
FAN10G4254 Fragaria x ananassa HOM05D005367 ORTHO05D006328 6.7e-19 98.2 189 34.9
FAN10G3657 Fragaria x ananassa HOM05D005367 ORTHO05D006328 8.7e-19 97.8 182 35.2
Thhalv10008538m.g Eutrema salsugineum HOM05D005367 ORTHO05D006328 1.9e-18 96.7 175 36.6
VMungo1383G2823 Vigna mungo HOM05D005367 ORTHO05D006328 2.5e-18 96.3 174 33.3
FvH4_7g29600 Fragaria vesca HOM05D005367 ORTHO05D006328 3.3e-18 95.9 188 34.6
Phvul.008G065800 Phaseolus vulgaris HOM05D005367 ORTHO05D006328 3.3e-18 95.9 149 37.6
Atru.chr1.440 Acer truncatum HOM05D005367 ORTHO05D006328 5.7e-18 95.1 185 37.3
AL1G10610 Arabidopsis lyrata HOM05D005367 ORTHO05D006328 9.6e-18 94.4 179 38.5
Carub.0001s0048 Capsella rubella HOM05D005367 ORTHO05D006328 9.6e-18 94.4 178 35.4
AUR62004342 Chenopodium quinoa HOM05D005367 ORTHO05D006328 9.6e-18 94.4 141 41.1
QL09p013904 Quercus lobata HOM05D005367 ORTHO05D006328 1.3e-17 94.0 151 42.4
Sabra14G0059900 Salix brachista HOM05D005367 ORTHO05D006328 1.6e-17 93.6 214 35.0
HPP92_022052 Vanilla planifolia HOM05D005367 ORTHO05D006328 1.1e-16 90.9 147 36.7
HPP92_027620 Vanilla planifolia HOM05D005367 ORTHO05D006328 1.4e-16 90.5 147 36.7
AT1G01730 Arabidopsis thaliana HOM05D005367 ORTHO05D006328 2.4e-16 89.7 179 36.9
DCAR_000242 Daucus carota HOM05D005367 ORTHO05D006328 1.2e-15 87.4 116 44.8
DCAR_010300 Daucus carota HOM05D005367 ORTHO05D006328 2.6e-15 86.3 147 34.0
FAN03G1577 Fragaria x ananassa HOM05D005367 ORTHO05D006328 2.2e-14 83.2 141 36.9
vmacro06668 Vaccinium macrocarpon HOM05D005367 ORTHO05D006328 8.4e-14 81.3 171 34.5
Potri.015G145000 Populus trichocarpa HOM05D005367 ORTHO05D006328 6.1e-12 75.1 143 37.1
MBI17_g24635_MAGBIO Magnolia biondii HOM05D005367 ORTHO05D006328 1.0e-11 74.3 194 30.9
FAN10G0871 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.3e-11 73.9 106 39.6
FAN10G3879 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.3e-11 73.9 108 40.7
FAN10G2377 Fragaria x ananassa HOM05D005367 ORTHO05D006328 2.3e-11 73.2 82 43.9
FAN28G3009 Fragaria x ananassa HOM05D005367 ORTHO05D006328 2.3e-11 73.2 82 43.9
Rhsim03G0187100 Rhododendron simsii HOM05D005367 ORTHO05D006328 2.3e-11 73.2 196 31.6
Actinidia34119 Actinidia chinensis HOM05D005367 ORTHO05D006328 2.5e-10 69.7 152 32.9
Aa31LG1G11100 Aethionema arabicum HOM05D005367 ORTHO05D006328 5.7e-10 68.6 64 54.7
FAN10G1555 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.6e-09 67.0 116 38.8
AUR62022543 Chenopodium quinoa HOM05D000713 ORTHO05D000547 6.3e-09 65.1 77 41.6
Dinv35219 Davidia involucrata HOM05D005367 ORTHO05D006328 6.3e-09 65.1 150 30.0
MD01G1056800 Malus domestica HOM05D005367 ORTHO05D006328 4.5e-07 58.9 96 41.7
Os04g0556900 Oryza sativa ssp. japonica HOM05D005367 ORTHO05D006328 2.2e-06 56.6 167 28.7
Prupe.2G295600 Prunus persica HOM05D005367 ORTHO05D006328 2.2e-06 56.6 125 37.6
AUR62022549 Chenopodium quinoa HOM05D005367 ORTHO05D006328 5.0e-06 55.5 109 38.5
FAN06G3705 Fragaria x ananassa HOM05D005367 ORTHO05D006328 8.5e-06 54.7 188 27.1
FAN06G4288 Fragaria x ananassa HOM05D005367 ORTHO05D006328 8.5e-06 54.7 188 27.1
Sabra02G0126000 Salix brachista HOM05D005367 ORTHO05D006328 8.5e-06 54.7 145 30.3


User provided reference genes

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