Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0008026g0020 Nicotiana tabacum HOM05D006306 ORTHO05D007912 2.5e-159 565.5 296 100.0
Nitab4.5_0001748g0060 Nicotiana tabacum HOM05D006306 ORTHO05D007912 8.2e-155 550.4 294 96.3
Peaxi162Scf00057g00026 Petunia axillaris HOM05D006306 ORTHO05D007912 7.5e-132 474.2 290 82.8
Sopen03g003670 Solanum pennellii HOM05D006306 ORTHO05D007912 5.0e-128 461.5 296 81.1
PGSC0003DMG400019962 Solanum tuberosum HOM05D006306 ORTHO05D007912 4.3e-127 458.4 291 81.4
CAN.G926.4 Capsicum annuum HOM05D006306 ORTHO05D007912 2.1e-126 456.1 296 78.0
Solyc03g007750.3 Solanum lycopersicum HOM05D006306 ORTHO05D007912 2.8e-126 455.7 296 80.4
MD01G1211200 Malus domestica HOM05D006306 ORTHO05D007912 2.4e-74 283.1 299 54.5
Lj1A1009G47 Lonicera japonica HOM05D006306 ORTHO05D007912 7.1e-74 281.6 307 53.4
Hma1.2p1_0142F.1_g064400 Hydrangea macrophylla HOM05D006306 ORTHO05D007912 1.8e-72 276.9 295 55.6
TAR636G3656 Trochodendron aralioides HOM05D006306 ORTHO05D007912 1.8e-72 276.9 299 52.5
CiPaw.06G005500 Carya illinoinensis HOM05D006306 ORTHO05D007912 3.0e-72 276.2 305 49.8
RhsimUnG0097700 Rhododendron simsii HOM05D006306 ORTHO05D007912 3.0e-72 276.2 299 51.5
Atru.chr1.326 Acer truncatum HOM05D006306 ORTHO05D007912 6.7e-72 275.0 291 54.0
GSVIVG01028794001 Vitis vinifera HOM05D006306 ORTHO05D007912 6.7e-72 275.0 293 53.2
Prupe.2G303600 Prunus persica HOM05D006306 ORTHO05D007912 8.7e-72 274.6 287 53.7
Cfa016324 Carpinus fangiana HOM05D006306 ORTHO05D007912 7.4e-71 271.6 305 52.1
Psat6g195200 Pisum sativum HOM05D006306 ORTHO05D007912 9.6e-71 271.2 294 50.3
CANSAT21G1468 Cannabis sativa HOM05D006306 ORTHO05D007912 1.3e-70 270.8 298 48.7
Ciclev10005526m.g Citrus clementina HOM05D006306 ORTHO05D007912 2.1e-70 270.0 293 55.6
Rhsim03G0195700 Rhododendron simsii HOM05D006306 ORTHO05D007912 2.8e-70 269.6 306 50.7
Gorai.008G272800 Gossypium raimondii HOM05D006306 ORTHO05D007912 1.4e-69 267.3 295 51.9
Glyma.10G229500 Glycine max HOM05D006306 ORTHO05D007912 3.1e-69 266.2 291 50.9
Ca_10706_v3 Cicer arietinum L. HOM05D006306 ORTHO05D007912 5.3e-69 265.4 293 48.8
COL.COLO4_30262 Corchorus olitorius HOM05D006306 ORTHO05D007912 6.9e-69 265.0 300 50.3
Lsat_1_v5_gn_8_6341 Lactuca sativa HOM05D006306 ORTHO05D007912 9.0e-69 264.6 291 49.8
Cc02_g02170 Coffea canephora HOM05D006306 ORTHO05D007912 4.5e-68 262.3 287 49.5
CSS0007539 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 7.6e-68 261.5 294 53.1
RcHm_v2.0_Chr1g0379511 Rosa chinensis HOM05D006306 ORTHO05D007912 2.9e-67 259.6 288 52.4
arahy.Tifrunner.gnm1.ann1.FS5X82 Arachis hypogaea HOM05D006306 ORTHO05D007912 3.8e-67 259.2 294 50.0
arahy.Tifrunner.gnm1.ann1.U1BTLB Arachis hypogaea HOM05D006306 ORTHO05D007912 3.8e-67 259.2 295 50.5
QL09p012095 Quercus lobata HOM05D006306 ORTHO05D007912 4.9e-67 258.8 294 52.0
MSTRG.27066 Avicennia marina HOM05D006306 ORTHO05D007912 4.2e-66 255.8 304 48.0
MBI06_g33547_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 7.1e-66 255.0 292 47.9
VMungo0720G2617 Vigna mungo HOM05D006306 ORTHO05D007912 1.2e-65 254.2 297 46.5
Potri.012G035500 Populus trichocarpa HOM05D006306 ORTHO05D007912 6.0e-65 251.9 293 48.5
Duzib084G0050 Durio zibethinus HOM05D006306 ORTHO05D007912 1.0e-64 251.1 305 48.2
Aqoxy5G04066 Aquilegia oxysepala HOM05D006306 ORTHO05D007912 1.3e-64 250.8 293 48.1
FvH4_7g30600 Fragaria vesca HOM05D006306 ORTHO05D007912 1.3e-64 250.8 292 51.4
FAN06G4689 Fragaria x ananassa HOM05D006306 ORTHO05D007912 1.3e-64 250.8 292 51.4
FAN06G4805 Fragaria x ananassa HOM05D006306 ORTHO05D007912 3.9e-64 249.2 292 51.0
TWI39G0038 Tripterygium wilfordii HOM05D006306 ORTHO05D007912 3.9e-64 249.2 295 47.5
Cpa.g.sc3.9 Carica papaya HOM05D006306 ORTHO05D007912 5.1e-64 248.8 299 48.8
HanXRQChr05g0141161 Helianthus annuus HOM05D006306 ORTHO05D007912 5.1e-64 248.8 294 48.3
Eucgr.K00302 Eucalyptus grandis HOM05D006306 ORTHO05D007912 8.7e-64 248.1 291 48.5
Sc19g0001030 Simmondsia chinensis HOM05D006306 ORTHO05D007912 8.7e-64 248.1 290 49.7
CAN.G926.5 Capsicum annuum HOM05D006306 ORTHO05D007912 1.5e-63 247.3 181 69.1
FAN01G1106 Fragaria x ananassa HOM05D006306 ORTHO05D007912 2.5e-63 246.5 292 50.3
FAN10G3235 Fragaria x ananassa HOM05D006306 ORTHO05D007912 2.5e-63 246.5 292 50.7
Haze_00077 Corylus avellana HOM05D000147 ORTHO05D002016 4.3e-63 245.7 291 51.2
AUR62021081 Chenopodium quinoa HOM05D006306 ORTHO05D007912 1.6e-62 243.8 301 47.8
Hund11704 Selenicereus undatus HOM05D006306 ORTHO05D007912 2.8e-62 243.0 267 49.8
Phvul.007G076000 Phaseolus vulgaris HOM05D006306 ORTHO05D007912 4.8e-62 242.3 290 48.3
PGR142G3937 Punica granatum HOM05D006306 ORTHO05D007912 4.8e-62 242.3 292 46.2
Lalb_Chr02g0141321 Lupinus albus HOM05D006306 ORTHO05D007912 1.1e-61 241.1 251 51.4
Lj5g0016065 Lotus japonicus HOM05D006306 ORTHO05D007912 1.4e-61 240.7 294 45.6
Medtr1g099490 Medicago truncatula HOM05D006306 ORTHO05D007912 1.8e-61 240.4 247 50.6
Migut.F00264 Erythranthe guttata HOM05D006306 ORTHO05D007912 2.4e-61 240.0 299 45.8
ClCG01G000830 Citrullus lanatus HOM05D006306 ORTHO05D007912 2.0e-60 236.9 291 46.7
Gohir.A12G254499 Gossypium hirsutum HOM05D006306 ORTHO05D007912 2.0e-60 236.9 291 48.5
FAN10G1990 Fragaria x ananassa HOM05D006306 ORTHO05D007912 4.5e-60 235.7 324 46.0
Sed0005488 Sechium edule HOM05D006306 ORTHO05D007912 4.5e-60 235.7 291 45.7
Sabra12G0024000 Salix brachista HOM05D006306 ORTHO05D007912 3.8e-59 232.6 292 46.2
PSO170G4684 Papaver somniferum HOM05D006306 ORTHO05D007912 5.0e-59 232.3 297 44.1
PSO063G5557 Papaver somniferum HOM05D006306 ORTHO05D007912 6.5e-59 231.9 297 44.8
SGA_v2.0_scaffold192G40609 Striga asiatica HOM05D006306 ORTHO05D007912 1.2e-57 227.6 296 45.9
CsaV3_5G000970 Cucumis sativus L. HOM05D006306 ORTHO05D007912 2.1e-57 226.9 291 45.0
unitig_92.g28262 Utricularia gibba HOM05D006306 ORTHO05D001071 5.1e-56 222.2 309 42.1
SalBow4G0206 Salvia bowleyana HOM05D006306 ORTHO05D007912 8.7e-56 221.5 268 47.4
ATR1131G020 Amborella trichopoda HOM05D006306 ORTHO05D007912 4.3e-55 219.2 304 44.7
Gohir.D12G255200 Gossypium hirsutum HOM05D006306 ORTHO05D007912 4.8e-54 215.7 206 57.3
CDE08G0346 Ceratophyllum demersum HOM05D006306 ORTHO05D007912 2.0e-52 210.3 267 44.9
Carub.0008s1304 Capsella rubella HOM05D006306 ORTHO05D007912 2.2e-51 206.8 290 41.7
HPP92_009775 Vanilla planifolia HOM05D006306 ORTHO05D007912 3.8e-51 206.1 271 43.5
THA.LOC104825120 Tarenaya hassleriana HOM05D006306 ORTHO05D007912 2.5e-50 203.4 293 41.3
vmacro06599 Vaccinium macrocarpon HOM05D006306 ORTHO05D007912 2.1e-49 200.3 334 39.8
Thecc.03G188100 Theobroma cacao HOM05D006306 ORTHO05D007912 4.6e-49 199.1 160 64.4
Manes.06G154300 Manihot esculenta HOM05D006306 ORTHO05D007912 1.4e-48 197.6 207 51.2
AT5G52880 Arabidopsis thaliana HOM05D006306 ORTHO05D007912 3.3e-47 193.0 266 43.6
AL8G27340 Arabidopsis lyrata HOM05D006306 ORTHO05D007912 1.7e-46 190.7 266 43.2
BcaC04g20532 Brassica carinata HOM05D006306 ORTHO05D007912 3.7e-46 189.5 288 40.6
BolC9t57127H Brassica oleracea HOM05D006306 ORTHO05D007912 4.8e-46 189.1 288 40.6
BcaB08g35641 Brassica carinata HOM05D006306 ORTHO05D007912 1.4e-45 187.6 287 39.4
MBI17_g41518_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 5.9e-44 182.2 292 40.8
Hma1.2p1_0142F.1_g064410 Hydrangea macrophylla HOM05D006306 ORTHO05D007912 1.0e-43 181.4 197 54.3
AUR62031450 Chenopodium quinoa HOM05D006306 ORTHO05D007912 3.2e-42 176.4 209 48.8
AagrBONN_evm.TU.Sc2ySwM_228.2460 Anthoceros agrestis HOM05D006306 ORTHO05D007912 2.1e-41 173.7 309 32.7
DCAR_020289 Daucus carota HOM05D006306 ORTHO05D007912 4.7e-41 172.6 195 48.2
Zm00001eb293490 Zea mays HOM05D006306 ORTHO05D007912 3.0e-40 169.9 201 46.8
RcHm_v2.0_Chr1g0379281 Rosa chinensis HOM05D006306 ORTHO05D007912 3.9e-40 169.5 150 58.7
Aa31LG3G9130 Aethionema arabicum HOM05D006306 ORTHO05D007912 5.2e-40 169.1 262 41.6
ECA233G3199 Erigeron canadensis HOM05D006306 ORTHO05D007912 6.7e-40 168.7 250 44.8
TPR.G7772 Trifolium pratense HOM05D006306 ORTHO05D007912 7.4e-39 165.2 214 46.7
Nn1g01725 Nelumbo nucifera HOM05D006306 ORTHO05D007912 2.2e-38 163.7 290 39.0
BcaC04g20531 Brassica carinata HOM05D006306 ORTHO05D007912 1.6e-36 157.5 241 39.8
MELO3C034012.2 Cucumis melo HOM05D006306 ORTHO05D007912 2.6e-31 140.2 200 40.0
Pp3c4_17520 Physcomitrium patens HOM05D006306 ORTHO05D007912 4.4e-31 139.4 288 32.3
BolC9t57131H Brassica oleracea HOM05D006306 ORTHO05D007912 7.5e-31 138.7 197 42.6
Os05g0526300 Oryza sativa ssp. japonica HOM05D006306 ORTHO05D007912 1.7e-30 137.5 137 52.6
CARHR265820 Cardamine hirsuta HOM05D006306 ORTHO05D007912 2.8e-30 136.7 230 39.1
AagrBONN_evm.TU.Sc2ySwM_117.3502 Anthoceros agrestis HOM05D006306 ORTHO05D007912 6.3e-30 135.6 269 32.3
Thhalv10014697m.g Eutrema salsugineum HOM05D006306 ORTHO05D007912 2.4e-29 133.7 232 37.1
RcHm_v2.0_Chr1g0379501 Rosa chinensis HOM05D006306 ORTHO05D007912 5.3e-29 132.5 212 40.6
C09p42490 Brassica napus HOM05D006306 ORTHO05D007912 1.2e-28 131.3 231 38.1
CBR_g45678 Chara braunii HOM05D006306 ORTHO05D007912 1.2e-28 131.3 352 29.5
Sp6g15040 Schrenkiella parvula HOM05D006306 ORTHO05D007912 4.5e-28 129.4 298 33.6
BcaB08g35646 Brassica carinata HOM05D006306 ORTHO05D007912 1.3e-27 127.9 249 34.5
RcHm_v2.0_Chr1g0378761 Rosa chinensis HOM05D006306 ORTHO05D007912 8.5e-27 125.2 237 35.9
Ah.13g069400 Amaranthus hybridus HOM05D006306 ORTHO05D007912 7.2e-26 122.1 105 62.9
TPR.G10934 Trifolium pratense HOM05D006306 ORTHO05D007912 2.7e-25 120.2 93 67.7
Aa31LG3G9120 Aethionema arabicum HOM05D006306 ORTHO05D007912 2.3e-24 117.1 201 37.8
MBI12_g17737_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 1.5e-23 114.4 105 58.1
Ah.13g069420 Amaranthus hybridus HOM05D006306 ORTHO05D007912 1.7e-22 110.9 123 52.8
Pp3c3_15840 Physcomitrium patens HOM05D006306 ORTHO05D007912 2.2e-22 110.5 276 29.3
A10p10330 Brassica napus HOM05D006306 ORTHO05D007912 3.7e-22 109.8 102 56.9
Dinv28363 Davidia involucrata HOM05D000147 ORTHO05D002016 1.1e-18 98.2 79 69.6
COL.COLO4_02740 Corchorus olitorius HOM05D006306 ORTHO05D007912 4.7e-17 92.8 57 77.2
Prupe.2G304000 Prunus persica HOM05D006306 ORTHO05D007912 4.7e-17 92.8 58 74.1
Prupe.2G291600 Prunus persica HOM05D006306 ORTHO05D007912 1.4e-16 91.3 58 72.4
C09p42540 Brassica napus HOM05D006306 ORTHO05D007912 1.2e-15 88.2 141 41.8
CSS0044760 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 5.7e-15 85.9 57 71.9
ClCG04G002190 Citrullus lanatus HOM05D006306 ORTHO05D007912 9.8e-15 85.1 81 58.0
ClCG04G002620 Citrullus lanatus HOM05D006306 ORTHO05D007912 9.8e-15 85.1 81 58.0
CSS0035371 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 1.3e-14 84.7 101 46.5
SMO325G0002 Selaginella moellendorffii HOM05D006584 ORTHO05D007640 2.7e-12 77.0 154 33.1
Glyma.20G163801 Glycine max HOM05D006306 ORTHO05D007912 3.3e-10 70.1 123 31.7
RcHm_v2.0_Chr1g0379101 Rosa chinensis HOM05D006306 ORTHO05D007912 1.8e-08 64.3 48 58.3
MCO14G272 Micromonas commoda HOM05D006306 ORTHO05D007912 2.2e-06 57.4 184 27.7


User provided reference genes

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