Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0007979g0080 Nicotiana tabacum HOM05D000533 ORTHO05D006151 1.7e-72 275.8 130 100.0
Solyc03g013615.1 Solanum lycopersicum HOM05D000533 ORTHO05D006151 6.6e-56 220.7 141 79.4
Solyc11g021220.2 Solanum lycopersicum HOM05D000533 ORTHO05D006151 2.5e-55 218.8 142 78.9
HanXRQChr00c0718g0576981 Helianthus annuus HOM05D000533 ORTHO05D006151 9.5e-55 216.9 127 84.3
Peaxi162Scf00030g02119 Petunia axillaris HOM05D000533 ORTHO05D006151 4.1e-50 201.4 141 75.2
Peaxi162Scf00269g01411 Petunia axillaris HOM05D000533 ORTHO05D006151 4.1e-50 201.4 141 75.2
Gohir.A08G123600 Gossypium hirsutum HOM05D000533 ORTHO05D006151 1.6e-49 199.5 142 74.6
RcHm_v2.0_Chr5g0017191 Rosa chinensis HOM05D000533 ORTHO05D006151 2.3e-48 195.7 142 73.2
RcHm_v2.0_CPg0502751 Rosa chinensis HOM05D000533 ORTHO05D006151 2.3e-48 195.7 142 73.2
HanXRQChr00c0336g0573681 Helianthus annuus HOM05D000533 ORTHO05D006151 3.9e-48 194.9 139 73.4
HanXRQChr02g0059731 Helianthus annuus HOM05D000533 ORTHO05D006151 3.9e-48 194.9 139 73.4
HanXRQChr09g0258491 Helianthus annuus HOM05D000533 ORTHO05D006151 3.9e-48 194.9 139 73.4
HanXRQChr15g0465421 Helianthus annuus HOM05D000533 ORTHO05D001069 3.9e-48 194.9 139 73.4
HanXRQChr15g0465471 Helianthus annuus HOM05D000533 ORTHO05D001069 3.9e-48 194.9 139 73.4
HanXRQChr17g0569711 Helianthus annuus HOM05D000533 ORTHO05D001069 3.9e-48 194.9 139 73.4
HanXRQChr17g0569761 Helianthus annuus HOM05D000533 ORTHO05D001069 3.9e-48 194.9 139 73.4
HanXRQCPg0580331 Helianthus annuus HOM05D000533 ORTHO05D001069 3.9e-48 194.9 139 73.4
CAN.G1045.11 Capsicum annuum HOM05D000533 ORTHO05D006151 6.6e-48 194.1 142 73.2
CAN.G1298.19 Capsicum annuum HOM05D000533 ORTHO05D006151 6.6e-48 194.1 142 73.2
CAN.G1526.2 Capsicum annuum HOM05D000533 ORTHO05D006151 6.6e-48 194.1 142 73.2
CAN.G278.1 Capsicum annuum HOM05D000533 ORTHO05D006151 6.6e-48 194.1 142 73.2
CAN.G413.10 Capsicum annuum HOM05D000533 ORTHO05D006151 6.6e-48 194.1 142 73.2
CAN.G939.4 Capsicum annuum HOM05D000533 ORTHO05D006151 6.6e-48 194.1 142 73.2
PGR111G0107 Punica granatum HOM05D000533 ORTHO05D006151 4.3e-47 191.4 139 73.4
BolC2t10613H Brassica oleracea HOM05D000533 ORTHO05D006151 1.2e-46 189.9 140 71.4
C09p24660 Brassica napus HOM05D000533 ORTHO05D006151 1.6e-46 189.5 140 71.4
C09p40170 Brassica napus HOM05D000533 ORTHO05D006151 1.6e-46 189.5 140 71.4
BolSC29t60508H Brassica oleracea HOM05D000533 ORTHO05D006151 1.6e-46 189.5 140 71.4
BolSC35t60690H Brassica oleracea HOM05D000533 ORTHO05D006151 1.6e-46 189.5 140 71.4
BolSC35t60706H Brassica oleracea HOM05D000533 ORTHO05D006151 1.6e-46 189.5 140 71.4
BraSC143t45658Z Brassica rapa HOM05D000533 ORTHO05D006151 1.6e-46 189.5 140 71.4
BraSC59t46553Z Brassica rapa HOM05D000533 ORTHO05D006151 1.6e-46 189.5 140 71.4
Migut.D01250 Erythranthe guttata HOM05D000533 ORTHO05D006151 1.6e-46 189.5 141 71.6
AL9U11958 Arabidopsis lyrata HOM05D000533 ORTHO05D006151 2.1e-46 189.1 140 71.4
ATCG01090 Arabidopsis thaliana HOM05D000533 ORTHO05D006151 2.1e-46 189.1 140 71.4
BolSC45t60907H Brassica oleracea HOM05D000533 ORTHO05D006151 2.1e-46 189.1 141 72.3
TAR625G0707 Trochodendron aralioides HOM05D000533 ORTHO05D006151 2.8e-46 188.7 139 72.7
BolSC46t60956H Brassica oleracea HOM05D000533 ORTHO05D006151 8.0e-46 187.2 139 71.2
PSO548G0083 Papaver somniferum HOM05D000533 ORTHO05D006151 1.8e-45 186.0 139 71.2
Nn031s41615 Nelumbo nucifera HOM05D000533 ORTHO05D006151 3.1e-45 185.3 139 71.2
Nn064s42208 Nelumbo nucifera HOM05D000533 ORTHO05D006151 3.1e-45 185.3 139 71.2
BolSC47t61063H Brassica oleracea HOM05D000533 ORTHO05D006151 4.0e-45 184.9 140 71.4
DCAR_018912 Daucus carota HOM05D000533 ORTHO05D006151 5.2e-45 184.5 136 71.3
DCAR_032540 Daucus carota HOM05D000533 ORTHO05D006151 5.2e-45 184.5 136 71.3
Medtr3g450170 Medicago truncatula HOM05D000533 ORTHO05D006151 1.2e-44 183.3 129 75.2
Medtr4g006100 Medicago truncatula HOM05D000533 ORTHO05D001069 1.2e-44 183.3 129 75.2
Medtr6g042210 Medicago truncatula HOM05D000533 ORTHO05D006151 1.2e-44 183.3 129 75.2
Medtr7g021700 Medicago truncatula HOM05D000533 ORTHO05D006151 1.2e-44 183.3 129 75.2
Psat0s6989g0200 Pisum sativum HOM05D000533 ORTHO05D006151 1.2e-44 183.3 132 72.7
Psat6g140600 Pisum sativum HOM05D000533 ORTHO05D006151 1.2e-44 183.3 132 72.7
Psat6g140640 Pisum sativum HOM05D000533 ORTHO05D006151 1.2e-44 183.3 132 72.7
Lalb_Chr07g0191791 Lupinus albus HOM05D000533 ORTHO05D006151 1.5e-44 183.0 132 73.5
Lsat_1_v5_gn_4_118101 Lactuca sativa HOM05D000533 ORTHO05D006151 2.0e-44 182.6 135 72.6
Ciclev10013971m.g Citrus clementina HOM05D000533 ORTHO05D006151 4.4e-44 181.4 140 68.6
Ciclev10013973m.g Citrus clementina HOM05D000533 ORTHO05D006151 4.4e-44 181.4 140 68.6
Psat3g095000 Pisum sativum HOM05D000533 ORTHO05D006151 5.8e-44 181.0 132 72.0
LjContig00318g0022534 Lotus japonicus HOM05D000533 ORTHO05D006151 7.5e-44 180.6 132 72.7
LjContig00319g0019672 Lotus japonicus HOM05D000533 ORTHO05D006151 7.5e-44 180.6 132 72.7
C02p28830 Brassica napus HOM05D000533 ORTHO05D006151 9.8e-44 180.3 140 68.6
SalBow1G0791 Salvia bowleyana HOM05D000533 ORTHO05D006151 2.2e-43 179.1 141 67.4
Manes.17G012402 Manihot esculenta HOM05D000533 ORTHO05D006151 3.2e-42 175.3 129 70.5
Psat4g190120 Pisum sativum HOM05D000533 ORTHO05D006151 7.0e-42 174.1 132 69.7
Medtr3g054410 Medicago truncatula HOM05D000533 ORTHO05D006151 1.6e-41 172.9 107 79.4
Lj2P1238T111 Lonicera japonica HOM05D000533 ORTHO05D006151 4.6e-41 171.4 137 67.2
Lju5009P0T51 Lonicera japonica HOM05D000533 ORTHO05D006151 4.6e-41 171.4 137 67.2
Medtr0002s0160 Medicago truncatula HOM05D000533 ORTHO05D006151 1.7e-40 169.5 132 66.7
Nn1g00559 Nelumbo nucifera HOM05D000533 ORTHO05D006151 1.7e-40 169.5 139 66.2
Solyc02g011780.3 Solanum lycopersicum HOM05D000533 ORTHO05D006151 1.7e-40 169.5 128 68.0
QL93p0141_0017 Quercus lobata HOM05D000533 ORTHO05D006151 9.5e-39 163.7 139 64.0
Peaxi162Scf00137g00153 Petunia axillaris HOM05D000533 ORTHO05D006151 2.3e-37 159.1 84 92.9
TPR.G38950 Trifolium pratense HOM05D000533 ORTHO05D006151 4.0e-37 158.3 106 75.5
Gohir.1Z049779 Gossypium hirsutum HOM05D000533 ORTHO05D006151 6.8e-37 157.5 142 62.0
HanXRQChr00c0495g0575151 Helianthus annuus HOM05D000533 ORTHO05D006151 9.8e-36 153.7 129 66.7
HanXRQChr13g0421831 Helianthus annuus HOM05D000533 ORTHO05D006151 1.3e-35 153.3 117 68.4
Medtr5g015855 Medicago truncatula HOM05D000533 ORTHO05D006151 1.3e-35 153.3 112 73.2
C07p33460 Brassica napus HOM05D000533 ORTHO05D006151 4.9e-35 151.4 122 68.0
Medtr4g050810 Medicago truncatula HOM05D000533 ORTHO05D006151 1.1e-34 150.2 129 65.1
Mapoly0048s0041 Marchantia polymorpha HOM05D000533 ORTHO05D006151 1.4e-34 149.8 138 57.2
Haze_27676 Corylus avellana HOM05D000533 ORTHO05D006151 1.9e-34 149.4 82 87.8
MBI10_g47589_MAGBIO Magnolia biondii HOM05D000533 ORTHO05D001069 7.0e-34 147.5 118 67.8
MBI10_g47594_MAGBIO Magnolia biondii HOM05D000533 ORTHO05D001069 7.0e-34 147.5 118 67.8
HanXRQChr05g0152461 Helianthus annuus HOM05D000533 ORTHO05D006151 1.0e-32 143.7 92 79.3
HanXRQChr13g0413911 Helianthus annuus HOM05D000533 ORTHO05D006151 2.3e-32 142.5 124 65.3
Medtr5g063400 Medicago truncatula HOM05D000533 ORTHO05D006151 2.3e-32 142.5 94 77.7
arahy.Tifrunner.gnm1.ann1.92D98S Arachis hypogaea HOM05D000533 ORTHO05D006151 3.9e-32 141.7 76 90.8
arahy.Tifrunner.gnm1.ann1.FN06MZ Arachis hypogaea HOM05D000533 ORTHO05D006151 3.9e-32 141.7 76 90.8
arahy.Tifrunner.gnm1.ann1.JR5HFJ Arachis hypogaea HOM05D000533 ORTHO05D006151 3.9e-32 141.7 76 90.8
HanXRQChr01g0020061 Helianthus annuus HOM05D000533 ORTHO05D006151 6.6e-32 141.0 76 88.2
HanXRQChr13g0413691 Helianthus annuus HOM05D000533 ORTHO05D006151 1.9e-31 139.4 124 64.5
HanXRQChr13g0413761 Helianthus annuus HOM05D000533 ORTHO05D006151 1.9e-31 139.4 124 64.5
HanXRQChr13g0413841 Helianthus annuus HOM05D000533 ORTHO05D006151 1.9e-31 139.4 124 64.5
Gohir.A09G046292 Gossypium hirsutum HOM05D000533 ORTHO05D006151 2.5e-31 139.0 142 56.3
Aqoxy4G02725 Aquilegia oxysepala HOM05D000533 ORTHO05D006151 1.2e-30 136.7 103 70.9
HanXRQChr15g0464661 Helianthus annuus HOM05D000533 ORTHO05D006151 3.1e-29 132.1 100 70.0
Lalb_Chr09g0335441 Lupinus albus HOM05D000533 ORTHO05D006151 8.9e-29 130.6 74 86.5
Sed0017608 Sechium edule HOM05D000533 ORTHO05D006151 1.3e-27 126.7 85 74.1
Sed0013644 Sechium edule HOM05D000533 ORTHO05D006151 1.7e-27 126.3 81 77.8
Sed0016654 Sechium edule HOM05D000533 ORTHO05D006151 1.7e-27 126.3 81 77.8
HanXRQChr01g0000261 Helianthus annuus HOM05D000533 ORTHO05D006151 2.2e-27 125.9 98 68.4
HanXRQChr00c0504g0575311 Helianthus annuus HOM05D000533 ORTHO05D006151 3.7e-27 125.2 85 75.3
Ciclev10010202m.g Citrus clementina HOM05D000533 ORTHO05D006151 6.4e-27 124.4 98 68.4
HanXRQChr02g0037961 Helianthus annuus HOM05D000533 ORTHO05D006151 1.9e-26 122.9 102 64.7
SabraPtG0005600 Salix brachista HOM05D000533 ORTHO05D006151 1.7e-24 116.3 128 53.1
CSS0023353 Camellia sinensis var. sinensis HOM05D000533 ORTHO05D006151 1.1e-23 113.6 93 65.6
Migut.D01385 Erythranthe guttata HOM05D000533 ORTHO05D006151 9.5e-23 110.5 129 51.2
QL93p0957_0002 Quercus lobata HOM05D000533 ORTHO05D006151 6.2e-22 107.8 74 74.3
SMO086G0041 Selaginella moellendorffii HOM05D000533 ORTHO05D006151 1.1e-21 107.1 132 48.5
ClCG07G005240 Citrullus lanatus HOM05D000533 ORTHO05D006151 4.0e-21 105.1 89 57.3
Gohir.D11G334051 Gossypium hirsutum HOM05D000533 ORTHO05D006151 6.8e-21 104.4 71 74.6
Psat1g104880 Pisum sativum HOM05D000533 ORTHO05D006151 2.0e-20 102.8 71 73.2
HanXRQChr00c0328g0573621 Helianthus annuus HOM05D000533 ORTHO05D006151 2.6e-20 102.4 90 63.3
Lsat_1_v5_gn_6_54141 Lactuca sativa HOM05D000533 ORTHO05D006151 7.6e-20 100.9 105 57.1
Gohir.A06G128502 Gossypium hirsutum HOM05D000533 ORTHO05D006151 1.1e-18 97.1 84 59.5
BolSC29t60548H Brassica oleracea HOM05D000533 ORTHO05D006151 1.6e-17 93.2 68 69.1
Gohir.A04G053104 Gossypium hirsutum HOM05D000533 ORTHO05D006151 1.6e-17 93.2 66 71.2
BolSC49t61145H Brassica oleracea HOM05D000533 ORTHO05D006151 2.1e-17 92.8 68 69.1
BraSC103t45431Z Brassica rapa HOM05D000533 ORTHO05D006151 2.1e-17 92.8 68 69.1
C09p40320 Brassica napus HOM05D000533 ORTHO05D006151 2.7e-17 92.4 66 71.2
CARHR282460 Cardamine hirsuta HOM05D000533 ORTHO05D006151 2.7e-17 92.4 66 71.2
Haze_02267 Corylus avellana HOM05D000533 ORTHO05D006151 6.0e-17 91.3 62 74.2
Gohir.A11G178850 Gossypium hirsutum HOM05D000533 ORTHO05D006151 6.0e-17 91.3 69 68.1
BraSC179t45772Z Brassica rapa HOM05D000533 ORTHO05D006151 1.0e-16 90.5 68 67.6
BolSC44t60824H Brassica oleracea HOM05D000533 ORTHO05D006151 1.3e-16 90.1 65 70.8
Sed0021575 Sechium edule HOM05D000533 ORTHO05D006151 1.3e-16 90.1 88 53.4
BraSC138t45533Z Brassica rapa HOM05D000533 ORTHO05D006151 1.7e-16 89.7 60 75.0
Medtr8g086030 Medicago truncatula HOM05D000533 ORTHO05D006151 2.3e-16 89.4 52 78.8
Solyc01g086880.3 Solanum lycopersicum HOM05D000533 ORTHO05D006151 3.0e-16 89.0 56 75.0
Gohir.D03G073128 Gossypium hirsutum HOM05D000533 ORTHO05D006151 8.7e-16 87.4 45 88.9
Gohir.D06G133750 Gossypium hirsutum HOM05D000533 ORTHO05D006151 8.7e-16 87.4 65 67.7
Medtr4g070120 Medicago truncatula HOM05D000533 ORTHO05D006151 8.7e-16 87.4 90 56.7
GSVIVG01029923001 Vitis vinifera HOM05D000533 ORTHO05D006151 5.6e-15 84.7 45 86.7
Ciclev10030456m.g Citrus clementina HOM05D000533 ORTHO05D006151 9.6e-15 84.0 45 86.7
Lalb_Chr18g0049621 Lupinus albus HOM05D000533 ORTHO05D006151 1.3e-14 83.6 46 87.0
Glyma.18G155500 Glycine max HOM05D000533 ORTHO05D006151 3.6e-14 82.0 64 64.1
Lalb_Chr19g0130301 Lupinus albus HOM05D000533 ORTHO05D006151 3.6e-14 82.0 62 62.9
Psat0s1160g0360 Pisum sativum HOM05D000533 ORTHO05D006151 3.6e-14 82.0 43 88.4
MELO3C000180.2 Cucumis melo HOM05D000533 ORTHO05D006151 8.1e-14 80.9 42 88.1
Lsat_1_v5_gn_5_95761 Lactuca sativa HOM05D002069 ORTHO05D009794 3.1e-13 79.0 52 75.0
Gorai.002G166200 Gossypium raimondii HOM05D000533 ORTHO05D006151 6.9e-13 77.8 45 80.0
MELO3C031835.2 Cucumis melo HOM05D000533 ORTHO05D006151 9.0e-13 77.4 42 83.3
Psat0s411g0080 Pisum sativum HOM05D000533 ORTHO05D006151 1.5e-12 76.6 65 61.5
HanXRQChr02g0037941 Helianthus annuus HOM05D000003 ORTHO05D000004 3.4e-12 75.5 81 55.6
Gohir.D01G099050 Gossypium hirsutum HOM05D000533 ORTHO05D006151 4.4e-12 75.1 41 90.2
Hund17909 Selenicereus undatus HOM05D000533 ORTHO05D006151 6.4e-11 71.2 51 68.6
BolSC37t60802H Brassica oleracea HOM05D000533 ORTHO05D006151 5.4e-10 68.2 40 87.5
BraSC25t45912Z Brassica rapa HOM05D000533 ORTHO05D006151 7.1e-10 67.8 38 86.8
Aa31LG5G21720 Aethionema arabicum HOM05D000533 ORTHO05D006151 9.3e-10 67.4 39 84.6
Atru.chr9.2056 Acer truncatum HOM05D001098 ORTHO05D002527 2.1e-06 56.2 25 96.0


User provided reference genes

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