Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0007928g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 8.0e-132 473.8 243 100.0
Peaxi162Scf00189g00812 Petunia axillaris HOM05D004555 ORTHO05D005305 1.9e-96 356.3 257 72.0
Solyc04g080750.4 Solanum lycopersicum HOM05D004555 ORTHO05D005305 1.2e-95 353.6 255 72.9
PGSC0003DMG400003702 Solanum tuberosum HOM05D004555 ORTHO05D005305 1.6e-95 353.2 252 74.2
CAN.G847.6 Capsicum annuum HOM05D004555 ORTHO05D005305 7.1e-88 327.8 251 66.9
MSTRG.1250 Avicennia marina HOM05D004555 ORTHO05D005305 1.1e-85 320.5 254 65.0
Dinv39456 Davidia involucrata HOM05D004555 ORTHO05D005305 3.3e-85 318.9 252 63.9
PGSC0003DMG400015428 Solanum tuberosum HOM05D004555 ORTHO05D005305 5.6e-85 318.2 251 64.9
Solyc12g089230.2 Solanum lycopersicum HOM05D000012 ORTHO05D000567 7.4e-85 317.8 255 63.5
Sopen12g031110 Solanum pennellii HOM05D004555 ORTHO05D005305 6.2e-84 314.7 251 64.1
SGA_v2.0_scaffold201G41359 Striga asiatica HOM05D004555 ORTHO05D005305 5.8e-82 308.1 251 62.5
Peaxi162Scf00064g00530 Petunia axillaris HOM05D000012 ORTHO05D000567 1.3e-81 307.0 251 65.7
Migut.C00768 Erythranthe guttata HOM05D004555 ORTHO05D005305 6.4e-81 304.7 257 59.5
Actinidia29808 Actinidia chinensis HOM05D004555 ORTHO05D005305 1.1e-80 303.9 250 62.0
QL02p009656 Quercus lobata HOM05D004555 ORTHO05D005305 1.1e-80 303.9 250 60.8
Lsat_1_v5_gn_4_117401 Lactuca sativa HOM05D004555 ORTHO05D005305 4.2e-80 302.0 249 63.1
QL02p009638 Quercus lobata HOM05D004555 ORTHO05D005305 5.5e-80 301.6 250 60.4
Prupe.1G374200 Prunus persica HOM05D004555 ORTHO05D005305 1.6e-79 300.1 252 60.3
TWI56G1140 Tripterygium wilfordii HOM05D004555 ORTHO05D005305 3.5e-79 298.9 260 61.9
MD08G1024400 Malus domestica HOM05D004555 ORTHO05D005305 7.9e-79 297.7 254 59.4
Nn1g05806 Nelumbo nucifera HOM05D004555 ORTHO05D005305 7.9e-79 297.7 252 61.1
QL02p009623 Quercus lobata HOM05D004555 ORTHO05D005305 7.9e-79 297.7 250 60.4
CiPaw.07G156800 Carya illinoinensis HOM05D004555 ORTHO05D005305 1.8e-78 296.6 256 58.6
FAN27G1022 Fragaria x ananassa HOM05D004555 ORTHO05D005305 1.8e-78 296.6 246 60.6
HanXRQChr09g0269571 Helianthus annuus HOM05D004555 ORTHO05D005305 5.1e-78 295.0 244 63.1
HanXRQChr16g0501461 Helianthus annuus HOM05D004555 ORTHO05D005305 5.1e-78 295.0 245 62.0
Rhsim07G0242900 Rhododendron simsii HOM05D004555 ORTHO05D005305 5.1e-78 295.0 251 61.4
FAN15G3036 Fragaria x ananassa HOM05D004555 ORTHO05D005305 6.7e-78 294.7 246 60.2
FAN26G3263 Fragaria x ananassa HOM05D004555 ORTHO05D005305 6.7e-78 294.7 246 60.2
Rhsim07G0242300 Rhododendron simsii HOM05D004555 ORTHO05D005305 6.7e-78 294.7 251 61.4
RcHm_v2.0_Chr6g0301691 Rosa chinensis HOM05D004555 ORTHO05D005305 5.6e-77 291.6 247 59.5
FvH4_2g39310 Fragaria vesca HOM05D004555 ORTHO05D005305 7.4e-77 291.2 246 59.3
CSS0029656 Camellia sinensis var. sinensis HOM05D004555 ORTHO05D005305 9.6e-77 290.8 250 60.8
DCAR_022455 Daucus carota HOM05D004555 ORTHO05D005305 1.3e-76 290.4 249 59.8
Eucgr.F01860 Eucalyptus grandis HOM05D004555 ORTHO05D005305 1.3e-76 290.4 251 60.2
Gorai.009G199000 Gossypium raimondii HOM05D004555 ORTHO05D005305 2.1e-76 289.7 252 59.1
Gohir.D05G194000 Gossypium hirsutum HOM05D004555 ORTHO05D005305 2.8e-76 289.3 252 59.1
Atru.chr13.408 Acer truncatum HOM05D004555 ORTHO05D005305 4.8e-76 288.5 252 57.9
Lj4P789T31 Lonicera japonica HOM05D004555 ORTHO05D005305 6.2e-76 288.1 242 59.5
Sc02g0005680 Simmondsia chinensis HOM05D004555 ORTHO05D005305 8.2e-76 287.7 252 58.3
CsaV3_2G029030 Cucumis sativus L. HOM05D004555 ORTHO05D005305 1.4e-75 287.0 250 60.8
GSVIVG01009773001 Vitis vinifera HOM05D004555 ORTHO05D005305 1.4e-75 287.0 258 56.6
Gohir.A05G190600 Gossypium hirsutum HOM05D004555 ORTHO05D005305 1.8e-75 286.6 252 58.3
COL.COLO4_26241 Corchorus olitorius HOM05D004555 ORTHO05D005305 2.4e-75 286.2 247 59.5
Cfa013876 Carpinus fangiana HOM05D004555 ORTHO05D005305 3.1e-75 285.8 248 59.7
CANSAT25G0954 Cannabis sativa HOM05D004555 ORTHO05D005305 4.0e-75 285.4 243 60.1
arahy.Tifrunner.gnm1.ann1.MX0J1Q Arachis hypogaea HOM05D004555 ORTHO05D005305 5.3e-75 285.0 246 60.6
ClCG08G014730 Citrullus lanatus HOM05D004555 ORTHO05D005305 9.0e-75 284.3 249 59.4
Duzib093G2146 Durio zibethinus HOM05D004555 ORTHO05D005305 9.0e-75 284.3 246 58.9
Atru.chr13.407 Acer truncatum HOM05D004555 ORTHO05D005305 1.2e-74 283.9 253 57.7
Actinidia29807 Actinidia chinensis HOM05D004555 ORTHO05D005305 1.5e-74 283.5 251 58.6
Aqoxy5G01553 Aquilegia oxysepala HOM05D004555 ORTHO05D005305 4.5e-74 282.0 247 58.7
Sabra02G0025300 Salix brachista HOM05D004555 ORTHO05D005305 7.6e-74 281.2 252 56.0
arahy.Tifrunner.gnm1.ann1.LAIT0P Arachis hypogaea HOM05D004555 ORTHO05D005305 1.0e-73 280.8 247 59.5
Thecc.08G033700 Theobroma cacao HOM05D004555 ORTHO05D005305 1.3e-73 280.4 253 57.7
EL10Ac1g00613 Beta vulgaris HOM05D004555 ORTHO05D005305 1.7e-73 280.0 252 58.7
Potri.005G231600 Populus trichocarpa HOM05D004555 ORTHO05D005305 1.7e-73 280.0 246 58.5
Ciclev10002388m.g Citrus clementina HOM05D004555 ORTHO05D005305 3.8e-73 278.9 250 58.4
Sed0025869 Sechium edule HOM05D004555 ORTHO05D005305 3.8e-73 278.9 249 60.2
Cfa013877 Carpinus fangiana HOM05D004555 ORTHO05D005305 6.5e-73 278.1 250 58.0
Nitab4.5_0001861g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 6.5e-73 278.1 243 65.8
Thecc.08G033500 Theobroma cacao HOM05D004555 ORTHO05D005305 8.4e-73 277.7 248 57.7
PSO729G0189 Papaver somniferum HOM05D004555 ORTHO05D005305 2.5e-72 276.2 250 56.4
Lalb_Chr22g0354561 Lupinus albus HOM05D004555 ORTHO05D005305 9.3e-72 274.2 246 57.7
Glyma.14G071100 Glycine max HOM05D004555 ORTHO05D005305 3.5e-71 272.3 250 56.4
Glyma.17G253500 Glycine max HOM05D004555 ORTHO05D005305 3.5e-71 272.3 250 56.0
MBI16_g23832_MAGBIO Magnolia biondii HOM05D004555 ORTHO05D005305 3.5e-71 272.3 252 56.3
Sp1g29900 Schrenkiella parvula HOM05D004555 ORTHO05D005305 1.0e-70 270.8 245 55.9
Thhalv10001837m.g Eutrema salsugineum HOM05D004555 ORTHO05D005305 1.8e-70 270.0 244 55.7
Medtr1g022950 Medicago truncatula HOM05D004555 ORTHO05D005305 3.0e-70 269.2 247 57.5
Lj5g0004312 Lotus japonicus HOM05D004555 ORTHO05D005305 3.9e-70 268.9 247 56.3
AL1G49880 Arabidopsis lyrata HOM05D004555 ORTHO05D005305 5.1e-70 268.5 243 56.4
TPR.G30491 Trifolium pratense HOM05D004555 ORTHO05D005305 5.1e-70 268.5 246 56.9
Hund17186 Selenicereus undatus HOM05D004555 ORTHO05D005305 1.1e-69 267.3 242 55.8
THA.LOC104814152 Tarenaya hassleriana HOM05D004555 ORTHO05D005305 1.5e-69 266.9 247 54.7
AT1G35180 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 2.5e-69 266.2 243 56.0
BcaC05g27748 Brassica carinata HOM05D004555 ORTHO05D005305 2.5e-69 266.2 247 55.1
C05p37330 Brassica napus HOM05D004555 ORTHO05D005305 2.5e-69 266.2 247 55.1
Carub.0001s3280 Capsella rubella HOM05D004555 ORTHO05D005305 2.5e-69 266.2 243 55.6
PSO724G1102 Papaver somniferum HOM05D004555 ORTHO05D005305 4.3e-69 265.4 250 54.8
QL02p009603 Quercus lobata HOM05D004555 ORTHO05D005305 7.4e-69 264.6 247 55.1
THA.LOC104812564 Tarenaya hassleriana HOM05D004555 ORTHO05D005305 7.4e-69 264.6 249 53.4
BolC5t32477H Brassica oleracea HOM05D004555 ORTHO05D005305 9.7e-69 264.2 247 54.7
A05p23860 Brassica napus HOM05D004555 ORTHO05D005305 1.3e-68 263.8 247 54.7
BraA05t21262Z Brassica rapa HOM05D004555 ORTHO05D005305 1.3e-68 263.8 247 54.7
Phvul.001G011500 Phaseolus vulgaris HOM05D004555 ORTHO05D005305 2.2e-68 263.1 246 54.9
Nitab4.5_0000577g0020 Nicotiana tabacum HOM05D004555 ORTHO05D005305 2.8e-68 262.7 252 57.1
ECA232G1060 Erigeron canadensis HOM05D004555 ORTHO05D005305 4.8e-68 261.9 226 59.7
CANSAT25G2211 Cannabis sativa HOM05D004555 ORTHO05D005305 6.3e-68 261.5 251 52.6
Duzib116G0274 Durio zibethinus HOM05D004555 ORTHO05D005305 6.3e-68 261.5 231 57.6
SalBow7G0356 Salvia bowleyana HOM05D004555 ORTHO05D005305 2.4e-67 259.6 308 49.7
VMungo0647G2091 Vigna mungo HOM05D004555 ORTHO05D005305 6.9e-67 258.1 245 53.9
Hund17243 Selenicereus undatus HOM05D004555 ORTHO05D005305 1.5e-66 256.9 253 52.6
BcaB03g13672 Brassica carinata HOM05D004555 ORTHO05D005305 2.6e-66 256.1 243 53.5
CARHR288350 Cardamine hirsuta HOM05D004555 ORTHO05D005305 2.6e-66 256.1 243 54.3
Cc10_g14070 Coffea canephora HOM05D004555 ORTHO05D005305 2.9e-65 252.7 254 51.6
Nitab4.5_0001091g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 2.9e-65 252.7 240 58.8
AUR62014481 Chenopodium quinoa HOM05D004555 ORTHO05D005305 3.8e-65 252.3 252 51.2
Oeu030598.1 Olea europaea HOM05D004555 ORTHO05D005305 5.0e-65 251.9 253 56.1
BraA02t08192Z Brassica rapa HOM05D004555 ORTHO05D005305 8.5e-65 251.1 243 52.7
vmacro04301 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 1.4e-64 250.4 256 54.3
vmacro22853 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 1.4e-64 250.4 256 54.3
A02p31830 Brassica napus HOM05D004555 ORTHO05D005305 2.5e-64 249.6 243 52.3
unitig_26.g9839 Utricularia gibba HOM05D004555 ORTHO05D005305 4.2e-64 248.8 245 54.3
COL.COLO4_26242 Corchorus olitorius HOM05D004555 ORTHO05D005305 1.6e-63 246.9 213 60.1
Sopen04g034340 Solanum pennellii HOM05D004555 ORTHO05D005305 1.6e-63 246.9 155 81.9
Haze_22549 Corylus avellana HOM05D004555 ORTHO05D005305 1.0e-62 244.2 222 57.2
Os01g0262500 Oryza sativa ssp. japonica HOM05D004555 ORTHO05D005305 3.0e-62 242.7 244 52.5
AT1G35170 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 3.9e-62 242.3 243 52.3
AL1G52650 Arabidopsis lyrata HOM05D004555 ORTHO05D005305 5.1e-62 241.9 244 53.3
Cpa.g.sc99.8 Carica papaya HOM05D004555 ORTHO05D005305 8.8e-62 241.1 243 55.1
Sp1g33840 Schrenkiella parvula HOM05D004555 ORTHO05D005305 1.1e-61 240.7 245 50.6
AT1G45010 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 2.0e-61 240.0 244 52.9
A08p06280 Brassica napus HOM05D004555 ORTHO05D005305 2.0e-61 240.0 245 50.2
BraA08t32631Z Brassica rapa HOM05D004555 ORTHO05D005305 2.0e-61 240.0 245 50.2
BcaC07g37280 Brassica carinata HOM05D004555 ORTHO05D005305 3.3e-61 239.2 245 50.2
C08p07100 Brassica napus HOM05D004555 ORTHO05D005305 3.3e-61 239.2 245 50.2
BolC8t47554H Brassica oleracea HOM05D004555 ORTHO05D005305 3.3e-61 239.2 245 50.2
Thhalv10011751m.g Eutrema salsugineum HOM05D004555 ORTHO05D005305 7.4e-61 238.0 245 49.0
Hma1.2p1_1194F.1_g265760 Hydrangea macrophylla HOM05D004555 ORTHO05D005305 7.4e-61 238.0 214 56.5
BcaB04g17579 Brassica carinata HOM05D004555 ORTHO05D005305 2.8e-60 236.1 246 49.6
Carub.0001s3550 Capsella rubella HOM05D004555 ORTHO05D005305 2.8e-60 236.1 241 52.3
Psat6g009720 Pisum sativum HOM05D004555 ORTHO05D005305 6.3e-60 235.0 218 55.5
Manes.18G021200 Manihot esculenta HOM05D004555 ORTHO05D005305 1.8e-59 233.4 236 51.7
BcaC03g17015 Brassica carinata HOM05D004555 ORTHO05D005305 7.7e-58 228.0 248 49.2
BolC2t11011H Brassica oleracea HOM05D004555 ORTHO05D005305 7.7e-58 228.0 248 49.2
Cc10_g02450 Coffea canephora HOM05D004555 ORTHO05D005305 2.2e-57 226.5 156 69.9
ATR1154G019 Amborella trichopoda HOM05D004555 ORTHO05D005305 8.5e-57 224.6 225 51.1
SEGI_11700 Sequoiadendron giganteum HOM05D004555 ORTHO05D005305 1.2e-55 220.7 235 48.1
AUR62034520 Chenopodium quinoa HOM05D004555 ORTHO05D005305 3.9e-54 215.7 218 51.8
CARHR036190 Cardamine hirsuta HOM05D004555 ORTHO05D005305 1.8e-51 206.8 214 50.0
MELO3C010969.2 Cucumis melo HOM05D004555 ORTHO05D005305 3.8e-49 199.1 186 57.0
Zm00001eb333330 Zea mays HOM05D004555 ORTHO05D005305 1.1e-48 197.6 237 44.3
TPR.G17924 Trifolium pratense HOM05D004555 ORTHO05D005305 3.2e-48 196.1 186 55.4
MBI16_g23833_MAGBIO Magnolia biondii HOM05D004555 ORTHO05D005305 1.2e-47 194.1 267 42.7
AagrBONN_evm.TU.Sc2ySwM_369.584 Anthoceros agrestis HOM05D004555 ORTHO05D005305 6.7e-46 188.3 243 42.0
Nitab4.5_0007928g0040 Nicotiana tabacum HOM05D004555 ORTHO05D005305 1.7e-44 183.7 117 78.6
C02p49220 Brassica napus HOM05D004555 ORTHO05D005305 2.2e-44 183.3 219 45.7
Aa31LG6G8640 Aethionema arabicum HOM05D004555 ORTHO05D005305 4.8e-44 182.2 206 48.1
Mapoly0020s0017 Marchantia polymorpha HOM05D004555 ORTHO05D005305 7.0e-43 178.3 241 40.7
SMO259G0011 Selaginella moellendorffii HOM05D004555 ORTHO05D005305 3.5e-42 176.0 242 41.3
SEGI_31948 Sequoiadendron giganteum HOM05D004555 ORTHO05D005305 6.5e-41 171.8 153 51.0
FAN20G2579 Fragaria x ananassa HOM05D004555 ORTHO05D005305 3.2e-40 169.5 232 42.2
Sed0024456 Sechium edule HOM05D004555 ORTHO05D005305 1.5e-37 160.6 202 47.5
HanXRQChr09g0269541 Helianthus annuus HOM05D004555 ORTHO05D005305 2.5e-32 143.3 118 63.6
Haze_22557 Corylus avellana HOM05D004555 ORTHO05D005305 3.2e-32 142.9 124 59.7
CBR_g32335 Chara braunii HOM05D004555 ORTHO05D005305 1.0e-30 137.9 207 38.2
Lalb_Chr14g0369531 Lupinus albus HOM05D004555 ORTHO05D005305 3.4e-29 132.9 89 70.8
TPR.G29885 Trifolium pratense HOM05D004555 ORTHO05D005305 7.5e-29 131.7 132 51.5
Lalb_Chr14g0369521 Lupinus albus HOM05D004555 ORTHO05D005305 2.0e-26 123.6 132 47.0
Pp3c7_6700 Physcomitrium patens HOM05D004555 ORTHO05D005305 1.5e-24 117.5 173 37.0
Cc11_g05350 Coffea canephora HOM05D004555 ORTHO05D005305 1.6e-23 114.0 73 69.9
MCO11G540 Micromonas commoda HOM05D004555 ORTHO05D005305 1.3e-20 104.4 230 30.4
PGR031G0233 Punica granatum HOM05D004555 ORTHO05D005305 8.3e-20 101.7 78 60.3
QL02p009653 Quercus lobata HOM05D004555 ORTHO05D005305 9.2e-19 98.2 66 72.7
vmacro04300 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 9.2e-19 98.2 140 43.6
vmacro22852 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 9.2e-19 98.2 140 43.6
Hund17190 Selenicereus undatus HOM05D004555 ORTHO05D005305 6.1e-15 85.5 79 50.6
CAN.G851.44 Capsicum annuum HOM05D007089 ORTHO05D005305 3.5e-10 69.7 38 81.6
HanXRQChr09g0269551 Helianthus annuus HOM05D004555 ORTHO05D005305 1.7e-09 67.4 56 57.1


User provided reference genes

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