Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0007923g0040 Nicotiana tabacum HOM05D005674 ORTHO05D007015 4.9e-34 149.8 85 100.0
Nitab4.5_0000249g0090 Nicotiana tabacum HOM05D005674 ORTHO05D007015 2.4e-28 131.0 80 96.2
PGSC0003DMG401020415 Solanum tuberosum HOM05D005674 ORTHO05D007015 1.9e-25 121.3 83 77.1
Solyc07g055220.3 Solanum lycopersicum HOM05D005674 ORTHO05D007015 9.3e-25 119.0 82 75.6
Sopen07g027000 Solanum pennellii HOM05D005674 ORTHO05D007015 9.3e-25 119.0 82 75.6
CAN.G1360.18 Capsicum annuum HOM05D005674 ORTHO05D007015 2.1e-24 117.9 82 76.8
Solyc02g086230.2 Solanum lycopersicum HOM05D005674 ORTHO05D007015 2.1e-24 117.9 85 70.6
Sopen02g030910 Solanum pennellii HOM05D005674 ORTHO05D007015 2.1e-24 117.9 85 70.6
PGSC0003DMG400026386 Solanum tuberosum HOM05D005674 ORTHO05D007015 2.7e-24 117.5 85 69.4
CAN.G625.40 Capsicum annuum HOM05D005674 ORTHO05D007015 1.3e-23 115.2 81 72.8
CSS0001557 Camellia sinensis var. sinensis HOM05D005674 ORTHO05D007015 3.6e-21 107.1 84 63.1
Nitab4.5_0000753g0050 Nicotiana tabacum HOM05D005674 ORTHO05D007015 1.4e-20 105.1 80 80.0
Peaxi162Scf00888g00007 Petunia axillaris HOM05D005674 ORTHO05D007015 4.0e-20 103.6 82 76.8
Actinidia00858 Actinidia chinensis HOM05D005674 ORTHO05D007015 1.2e-19 102.1 84 60.7
Dinv12372 Davidia involucrata HOM05D005674 ORTHO05D007015 1.2e-19 102.1 80 65.0
Cfa012588 Carpinus fangiana HOM05D005674 ORTHO05D007015 4.5e-19 100.1 83 55.4
Sc04g0009990 Simmondsia chinensis HOM05D005674 ORTHO05D007015 5.8e-19 99.8 82 61.0
Ciclev10008244m.g Citrus clementina HOM05D005674 ORTHO05D007015 1.3e-18 98.6 83 57.8
Thecc.01G153300 Theobroma cacao HOM05D005674 ORTHO05D007015 1.3e-18 98.6 80 62.5
Lj1P677T28 Lonicera japonica HOM05D005674 ORTHO05D007015 1.7e-18 98.2 83 57.8
Cc05_g08520 Coffea canephora HOM05D005674 ORTHO05D007015 2.2e-18 97.8 84 58.3
DCAR_018956 Daucus carota HOM05D005674 ORTHO05D007015 2.2e-18 97.8 83 57.8
Nitab4.5_0007990g0010 Nicotiana tabacum HOM05D005674 ORTHO05D007015 3.8e-18 97.1 76 78.9
Rhsim04G0075800 Rhododendron simsii HOM05D005674 ORTHO05D007015 8.4e-18 95.9 84 54.8
ClCG07G002660 Citrullus lanatus HOM05D005674 ORTHO05D007015 1.4e-17 95.1 82 53.7
Hma1.2p1_0067F.1_g036940 Hydrangea macrophylla HOM05D005674 ORTHO05D007015 2.4e-17 94.4 82 56.1
Duzib160G0406 Durio zibethinus HOM05D005674 ORTHO05D007015 3.2e-17 94.0 83 54.2
GSVIVG01024415001 Vitis vinifera HOM05D005674 ORTHO05D007015 7.1e-17 92.8 81 56.8
CiPaw.03G192600 Carya illinoinensis HOM05D005674 ORTHO05D007015 9.3e-17 92.4 81 53.1
CsaV3_4G030900 Cucumis sativus L. HOM05D005674 ORTHO05D007015 9.3e-17 92.4 78 56.4
Lalb_Chr01g0007701 Lupinus albus HOM05D005674 ORTHO05D007015 9.3e-17 92.4 83 49.4
QL08p042254 Quercus lobata HOM05D005674 ORTHO05D007015 1.6e-16 91.7 81 54.3
Manes.09G079700 Manihot esculenta HOM05D005674 ORTHO05D007015 2.1e-16 91.3 81 55.6
CANSAT54G2399 Cannabis sativa HOM05D005674 ORTHO05D007015 3.5e-16 90.5 76 57.9
Dinv11955 Davidia involucrata HOM05D005674 ORTHO05D007015 3.5e-16 90.5 75 62.7
Gorai.011G295800 Gossypium raimondii HOM05D005674 ORTHO05D007015 4.6e-16 90.1 83 50.6
Atru.chr7.2335 Acer truncatum HOM05D005674 ORTHO05D007015 6.0e-16 89.7 85 49.4
RcHm_v2.0_Chr2g0130841 Rosa chinensis HOM05D005674 ORTHO05D007015 6.0e-16 89.7 82 50.0
Gohir.D10G254800 Gossypium hirsutum HOM05D005674 ORTHO05D007015 7.9e-16 89.4 83 50.6
Gorai.013G183800 Gossypium raimondii HOM05D005674 ORTHO05D007015 7.9e-16 89.4 82 51.2
Gohir.A10G242800 Gossypium hirsutum HOM05D005674 ORTHO05D007015 1.3e-15 88.6 82 51.2
Cpa.g.sc90.66 Carica papaya HOM05D005674 ORTHO05D007015 2.3e-15 87.8 82 50.0
Prupe.3G114500 Prunus persica HOM05D005674 ORTHO05D007015 3.0e-15 87.4 82 47.6
Sed0008626 Sechium edule HOM05D005674 ORTHO05D007015 3.9e-15 87.0 80 51.2
Gohir.D13G161800 Gossypium hirsutum HOM05D005674 ORTHO05D007015 5.1e-15 86.7 81 50.6
Manes.08G068200 Manihot esculenta HOM05D005674 ORTHO05D007015 5.1e-15 86.7 79 54.4
TAR627G1060 Trochodendron aralioides HOM05D005674 ORTHO05D007015 5.1e-15 86.7 79 51.9
Nn2g12528 Nelumbo nucifera HOM05D005674 ORTHO05D007015 6.7e-15 86.3 80 61.2
MD07G1055100 Malus domestica HOM05D005674 ORTHO05D007015 8.7e-15 85.9 82 47.6
Prupe.4G280300 Prunus persica HOM05D005674 ORTHO05D007015 8.7e-15 85.9 83 49.4
arahy.Tifrunner.gnm1.ann1.U482D3 Arachis hypogaea HOM05D005674 ORTHO05D007015 1.1e-14 85.5 83 47.0
Gohir.A13G157000 Gossypium hirsutum HOM05D005674 ORTHO05D007015 1.5e-14 85.1 83 49.4
Psat0s443g0080 Pisum sativum HOM05D005674 ORTHO05D007015 1.5e-14 85.1 82 47.6
Hund00863 Selenicereus undatus HOM05D005674 ORTHO05D007015 1.5e-14 85.1 81 50.6
VMungo1309G1849 Vigna mungo HOM05D005674 ORTHO05D007015 1.5e-14 85.1 81 45.7
arahy.Tifrunner.gnm1.ann1.MAGV51 Arachis hypogaea HOM05D005674 ORTHO05D007015 1.9e-14 84.7 83 45.8
MD15G1427800 Malus domestica HOM05D005674 ORTHO05D007015 3.3e-14 84.0 82 45.1
Phvul.009G126100 Phaseolus vulgaris HOM05D005674 ORTHO05D007015 3.3e-14 84.0 81 45.7
FvH4_6g27690 Fragaria vesca HOM05D005674 ORTHO05D007015 4.3e-14 83.6 80 46.2
TWI12G0566 Tripterygium wilfordii HOM05D005674 ORTHO05D007015 7.4e-14 82.8 83 50.6
COL.COLO4_33609 Corchorus olitorius HOM05D005674 ORTHO05D007015 1.3e-13 82.0 80 61.2
HanXRQChr13g0421081 Helianthus annuus HOM05D005674 ORTHO05D007015 1.3e-13 82.0 77 50.6
ECA240G0139 Erigeron canadensis HOM05D005674 ORTHO05D007015 1.6e-13 81.6 82 45.1
SalBow4G2062 Salvia bowleyana HOM05D005674 ORTHO05D007015 2.1e-13 81.3 85 45.9
Glyma.03G075500 Glycine max HOM05D005674 ORTHO05D007015 2.8e-13 80.9 79 49.4
Potri.006G006500 Populus trichocarpa HOM05D005674 ORTHO05D007015 2.8e-13 80.9 79 51.9
TWI31G0445 Tripterygium wilfordii HOM05D005674 ORTHO05D007015 2.8e-13 80.9 80 50.0
arahy.Tifrunner.gnm1.ann1.JH6JIJ Arachis hypogaea HOM05D005674 ORTHO05D007015 3.7e-13 80.5 78 47.4
Lsat_1_v5_gn_3_116841 Lactuca sativa HOM05D005674 ORTHO05D007015 3.7e-13 80.5 81 48.1
arahy.Tifrunner.gnm1.ann1.I145LQ Arachis hypogaea HOM05D005674 ORTHO05D007015 4.8e-13 80.1 77 48.1
BcaC06g33618 Brassica carinata HOM05D005674 ORTHO05D007015 4.8e-13 80.1 81 49.4
AUR62040438 Chenopodium quinoa HOM05D005674 ORTHO05D007015 6.2e-13 79.7 71 56.3
Ca_14577_v3 Cicer arietinum L. HOM05D005674 ORTHO05D007015 6.2e-13 79.7 82 45.1
AUR62024049 Chenopodium quinoa HOM05D005674 ORTHO05D007015 8.1e-13 79.3 72 55.6
Sabra06G0005200 Salix brachista HOM05D005674 ORTHO05D007015 8.1e-13 79.3 79 49.4
Sed0024338 Sechium edule HOM05D005674 ORTHO05D007015 8.1e-13 79.3 79 49.4
SGA_v2.0_scaffold18G08491 Striga asiatica HOM05D005674 ORTHO05D007015 1.4e-12 78.6 81 44.4
TAR626G0412 Trochodendron aralioides HOM05D005674 ORTHO05D007015 2.4e-12 77.8 82 59.8
CARHR224650 Cardamine hirsuta HOM05D005674 ORTHO05D007015 3.1e-12 77.4 78 50.0
BolC7t45434H Brassica oleracea HOM05D005674 ORTHO05D007015 6.9e-12 76.3 78 48.7
Thhalv10025145m.g Eutrema salsugineum HOM05D005674 ORTHO05D007015 9.0e-12 75.9 81 44.4
Medtr7g024140 Medicago truncatula HOM05D005674 ORTHO05D007015 9.0e-12 75.9 78 44.9
MBI15_g37633_MAGBIO Magnolia biondii HOM05D000146 ORTHO05D000178 1.5e-11 75.1 79 46.8
CAN.G1360.17 Capsicum annuum HOM05D001556 ORTHO05D001505 2.0e-11 74.7 39 89.7
TPR.G14745 Trifolium pratense HOM05D005674 ORTHO05D007015 2.6e-11 74.3 83 42.2
Lj3g0025693 Lotus japonicus HOM05D005674 ORTHO05D007015 5.8e-11 73.2 78 44.9
CARHR174820 Cardamine hirsuta HOM05D005674 ORTHO05D007015 1.0e-10 72.4 79 46.8
A03p50860 Brassica napus HOM05D005674 ORTHO05D007015 1.3e-10 72.0 77 46.8
BraA03t14173Z Brassica rapa HOM05D005674 ORTHO05D007015 1.3e-10 72.0 77 46.8
TPR.G15161 Trifolium pratense HOM05D005674 ORTHO05D007015 1.3e-10 72.0 83 42.2
Aa31LG10G3050 Aethionema arabicum HOM05D005674 ORTHO05D007015 2.2e-10 71.2 79 45.6
AL8G11670 Arabidopsis lyrata HOM05D005674 ORTHO05D007015 3.8e-10 70.5 79 45.6
Aa31LG6G670 Aethionema arabicum HOM05D005674 ORTHO05D007015 4.9e-10 70.1 76 46.1
C07p49250 Brassica napus HOM05D005674 ORTHO05D007015 6.5e-10 69.7 74 47.3
PSO782G5737 Papaver somniferum HOM05D005674 ORTHO05D007015 6.5e-10 69.7 83 39.8
AT5G46680 Arabidopsis thaliana HOM05D005674 ORTHO05D007015 8.4e-10 69.3 79 44.3
Carub.0008s0124 Capsella rubella HOM05D005674 ORTHO05D007015 1.4e-09 68.6 79 45.6
MELO3C033809.2 Cucumis melo HOM05D005674 ORTHO05D007015 1.4e-09 68.6 73 43.8
PSO063G6562 Papaver somniferum HOM05D005674 ORTHO05D007015 1.4e-09 68.6 80 40.0
Sp2g11490 Schrenkiella parvula HOM05D005674 ORTHO05D007015 1.4e-09 68.6 79 45.6
CsaV3_5G005440 Cucumis sativus L. HOM05D005674 ORTHO05D007015 1.9e-09 68.2 79 41.8
Migut.F00129 Erythranthe guttata HOM05D005674 ORTHO05D007015 1.9e-09 68.2 84 38.1
PGR142G3640 Punica granatum HOM05D005674 ORTHO05D007015 2.5e-09 67.8 79 40.5
BraA02t08037Z Brassica rapa HOM05D005674 ORTHO05D007015 3.2e-09 67.4 79 44.3
Os02g0793200 Oryza sativa ssp. japonica HOM05D005674 ORTHO05D007015 4.2e-09 67.0 75 44.0
A02p30210 Brassica napus HOM05D005674 ORTHO05D007015 5.5e-09 66.6 79 43.0
Sp7g16190 Schrenkiella parvula HOM05D005674 ORTHO05D007015 5.5e-09 66.6 73 45.2
THA.LOC104806715 Tarenaya hassleriana HOM05D005674 ORTHO05D007015 5.5e-09 66.6 80 41.2
AL7G36590 Arabidopsis lyrata HOM05D005674 ORTHO05D007015 7.1e-09 66.2 72 45.8
BcaC03g16871 Brassica carinata HOM05D005674 ORTHO05D007015 7.1e-09 66.2 79 43.0
Carub.0007s2342 Capsella rubella HOM05D005674 ORTHO05D007015 9.3e-09 65.9 73 45.2
Duzib116G0841 Durio zibethinus HOM05D005674 ORTHO05D007015 1.6e-08 65.1 37 75.7
C02p47730 Brassica napus HOM05D005674 ORTHO05D007015 2.1e-08 64.7 79 41.8
BolC2t10809H Brassica oleracea HOM05D005674 ORTHO05D007015 2.1e-08 64.7 79 41.8
Zm00001eb201010 Zea mays HOM05D005674 ORTHO05D007015 3.5e-08 63.9 70 44.3
HPP92_017208 Vanilla planifolia HOM05D005674 ORTHO05D007015 6.0e-08 63.2 39 71.8
Aqoxy3G02039 Aquilegia oxysepala HOM05D005674 ORTHO05D007015 1.3e-07 62.0 78 37.2
Thhalv10001221m.g Eutrema salsugineum HOM05D005674 ORTHO05D007015 1.3e-07 62.0 39 69.2
ATR1132G073 Amborella trichopoda HOM05D005674 ORTHO05D007015 1.8e-07 61.6 39 66.7
CsaV3_5G013070 Cucumis sativus L. HOM05D005674 ORTHO05D007015 5.7e-06 56.6 37 62.2
CsaV3_UNG017130 Cucumis sativus L. HOM05D005674 ORTHO05D007015 5.7e-06 56.6 37 62.2
CAN.G1034.39 Capsicum annuum HOM05D005674 ORTHO05D033540 9.6e-06 55.8 46 60.9
MELO3C033079.2 Cucumis melo HOM05D005674 ORTHO05D031076 9.6e-06 55.8 35 68.6
Eucgr.K01145 Eucalyptus grandis HOM05D005674 ORTHO05D007015 9.6e-06 55.8 37 62.2


User provided reference genes

Program Settings