Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0007798g0030 Nicotiana tabacum HOM05D004208 ORTHO05D005156 1.4e-237 825.9 421 100.0
Solyc01g098230.3 Solanum lycopersicum HOM05D004208 ORTHO05D005156 1.2e-143 513.8 500 61.8
Sopen01g041810 Solanum pennellii HOM05D004208 ORTHO05D005156 2.1e-143 513.1 500 61.8
Nitab4.5_0001526g0060 Nicotiana tabacum HOM05D004208 ORTHO05D005156 2.3e-142 509.6 433 67.9
Peaxi162Scf00225g00519 Petunia axillaris HOM05D004208 ORTHO05D005156 2.8e-140 502.7 512 60.0
CAN.G134.214 Capsicum annuum HOM05D004208 ORTHO05D005156 3.7e-140 502.3 496 61.1
Nitab4.5_0000245g0150 Nicotiana tabacum HOM05D004208 ORTHO05D005156 3.3e-133 479.2 491 59.9
Nitab4.5_0001165g0160 Nicotiana tabacum HOM05D004208 ORTHO05D005156 1.9e-125 453.4 454 61.5
Dinv22405 Davidia involucrata HOM05D004208 ORTHO05D005156 1.6e-124 450.3 495 53.9
Peaxi162Scf00225g00527 Petunia axillaris HOM05D004208 ORTHO05D005156 1.4e-120 437.2 499 56.1
Lj2A1151T32 Lonicera japonica HOM05D004208 ORTHO05D005156 3.2e-120 436.0 496 53.4
Actinidia07297 Actinidia chinensis HOM05D004208 ORTHO05D005156 2.4e-115 419.9 494 52.0
Actinidia25791 Actinidia chinensis HOM05D004208 ORTHO05D005156 1.7e-113 413.7 506 50.2
Manes.12G032400 Manihot esculenta HOM05D004208 ORTHO05D005156 8.5e-113 411.4 489 51.1
Migut.O00608 Erythranthe guttata HOM05D004208 ORTHO05D005156 1.6e-111 407.1 499 50.7
Hma1.2p1_0273F.1_g109690 Hydrangea macrophylla HOM05D004208 ORTHO05D005156 7.9e-111 404.8 492 50.0
CSS0041954 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 1.8e-110 403.7 492 48.8
Prupe.8G223600 Prunus persica HOM05D004208 ORTHO05D005156 1.8e-110 403.7 491 49.7
PGR031G1029 Punica granatum HOM05D004208 ORTHO05D005156 5.1e-110 402.1 492 49.4
CSS0038412 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 1.1e-109 401.0 492 48.6
Gohir.D08G208600 Gossypium hirsutum HOM05D004208 ORTHO05D005156 3.3e-109 399.4 489 51.1
Gohir.A08G190100 Gossypium hirsutum HOM05D004208 ORTHO05D005156 9.7e-109 397.9 487 51.3
Cc01_g18340 Coffea canephora HOM05D004208 ORTHO05D005156 1.3e-108 397.5 499 48.9
Gorai.004G221000 Gossypium raimondii HOM05D004208 ORTHO05D005156 1.7e-108 397.1 491 51.1
Cfa012194 Carpinus fangiana HOM05D004208 ORTHO05D005156 2.2e-108 396.7 472 51.1
Migut.N01348 Erythranthe guttata HOM05D004208 ORTHO05D005156 2.8e-108 396.4 499 49.9
TAR636G1466 Trochodendron aralioides HOM05D004208 ORTHO05D005156 8.2e-108 394.8 493 49.3
Thecc.01G258100 Theobroma cacao HOM05D004208 ORTHO05D005156 1.4e-107 394.0 489 50.1
Duzib133G1203 Durio zibethinus HOM05D004208 ORTHO05D005156 2.4e-107 393.3 487 50.1
Duzib138G0474 Durio zibethinus HOM05D004208 ORTHO05D005156 4.1e-107 392.5 489 50.1
GSVIVG01028335001 Vitis vinifera HOM05D004208 ORTHO05D005156 5.9e-106 388.7 491 49.5
Manes.13G034400 Manihot esculenta HOM05D004208 ORTHO05D005156 1.0e-105 387.9 491 48.7
Sed0002598 Sechium edule HOM05D004208 ORTHO05D005156 1.4e-104 384.0 488 49.0
CiPaw.11G131900 Carya illinoinensis HOM05D004208 ORTHO05D005156 1.9e-104 383.6 459 50.8
Haze_08822 Corylus avellana HOM05D004208 ORTHO05D005156 3.2e-104 382.9 488 48.4
Sed0003224 Sechium edule HOM05D004208 ORTHO05D005156 5.5e-104 382.1 488 49.6
CANSAT01G2107 Cannabis sativa HOM05D004208 ORTHO05D005156 9.4e-104 381.3 496 48.6
Ah.03g147410 Amaranthus hybridus HOM05D004208 ORTHO05D005156 4.7e-103 379.0 496 48.6
SalBow1G3185 Salvia bowleyana HOM05D004208 ORTHO05D005156 4.7e-103 379.0 490 48.4
COL.COLO4_05893 Corchorus olitorius HOM05D004208 ORTHO05D005156 8.8e-102 374.8 498 48.4
Rhsim01G0263600 Rhododendron simsii HOM05D004208 ORTHO05D005156 5.7e-101 372.1 499 47.9
MSTRG.16949 Avicennia marina HOM05D004208 ORTHO05D005156 9.7e-101 371.3 494 48.4
CsaV3_5G028820 Cucumis sativus L. HOM05D004208 ORTHO05D005156 1.3e-100 370.9 489 47.9
Aa31LG8G17460 Aethionema arabicum HOM05D004208 ORTHO05D005156 2.8e-100 369.8 489 47.6
SGA_v2.0_scaffold32G13335 Striga asiatica HOM05D004208 ORTHO05D005156 2.8e-100 369.8 486 48.8
AUR62030125 Chenopodium quinoa HOM05D004208 ORTHO05D005156 4.8e-100 369.0 495 47.9
CDE03G0182 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 8.2e-100 368.2 481 47.4
Dinv34629 Davidia involucrata HOM05D004208 ORTHO05D005156 8.2e-100 368.2 405 54.1
AUR62038602 Chenopodium quinoa HOM05D004208 ORTHO05D005156 3.1e-99 366.3 495 47.3
Actinidia09547 Actinidia chinensis HOM05D004208 ORTHO05D005156 5.3e-99 365.5 479 48.2
Ah.02g120380 Amaranthus hybridus HOM05D004208 ORTHO05D005156 5.3e-99 365.5 495 45.9
Lsat_1_v5_gn_7_79121 Lactuca sativa HOM05D004208 ORTHO05D005156 5.3e-99 365.5 494 46.8
FAN17G2653 Fragaria x ananassa HOM05D004208 ORTHO05D005156 3.5e-98 362.8 487 45.8
Atru.chr5.1689 Acer truncatum HOM05D004208 ORTHO05D005156 1.0e-97 361.3 486 47.9
Oeu062471.2 Olea europaea HOM05D004208 ORTHO05D005156 1.7e-97 360.5 548 44.7
AT2G36070 Arabidopsis thaliana HOM05D004208 ORTHO05D005156 2.9e-97 359.8 486 46.9
DCAR_005689 Daucus carota HOM05D004208 ORTHO05D005156 5.0e-97 359.0 512 45.5
RcHm_v2.0_Chr6g0288111 Rosa chinensis HOM05D004208 ORTHO05D005156 8.5e-97 358.2 491 45.4
FAN07G0785 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.9e-96 357.1 518 43.8
Eucgr.B01552 Eucalyptus grandis HOM05D004208 ORTHO05D005156 4.2e-96 355.9 423 52.5
FvH4_4g12040 Fragaria vesca HOM05D004208 ORTHO05D005156 4.2e-96 355.9 487 45.6
TWI32G0756 Tripterygium wilfordii HOM05D004208 ORTHO05D005156 1.2e-95 354.4 489 46.6
AL3G53520 Arabidopsis lyrata HOM05D004208 ORTHO05D005156 1.6e-95 354.0 484 46.3
FAN20G2986 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.6e-95 354.0 484 44.8
Sabra05G0173200 Salix brachista HOM05D004208 ORTHO05D005156 2.7e-95 353.2 504 46.4
Eucgr.G01944 Eucalyptus grandis HOM05D004208 ORTHO05D005156 4.7e-95 352.4 423 51.3
AL4G32160 Arabidopsis lyrata HOM05D004208 ORTHO05D005156 8.0e-95 351.7 486 45.7
PSO339G3828 Papaver somniferum HOM05D004208 ORTHO05D005156 1.8e-94 350.5 496 46.6
EL10Ac7g17258 Beta vulgaris HOM05D004208 ORTHO05D005156 3.0e-94 349.7 450 47.6
FAN15G2877 Fragaria x ananassa HOM05D004208 ORTHO05D005156 3.0e-94 349.7 514 43.0
Glyma.04G107400 Glycine max HOM05D004208 ORTHO05D005156 3.0e-94 349.7 487 46.0
Oeu042777.2 Olea europaea HOM05D004208 ORTHO05D005156 3.0e-94 349.7 475 48.8
QL12p032241 Quercus lobata HOM05D004208 ORTHO05D005156 6.7e-94 348.6 459 47.9
Medtr2g083690 Medicago truncatula HOM05D004208 ORTHO05D005156 3.3e-93 346.3 486 45.7
FAN27G3501 Fragaria x ananassa HOM05D004208 ORTHO05D005156 9.7e-93 344.7 460 45.9
Potri.005G224500 Populus trichocarpa HOM05D004208 ORTHO05D005156 9.7e-93 344.7 492 47.0
Psat7g228960 Pisum sativum HOM05D004208 ORTHO05D005156 1.7e-92 344.0 492 46.7
Ciclev10019992m.g Citrus clementina HOM05D004208 ORTHO05D005156 2.8e-92 343.2 481 47.4
FAN24G2300 Fragaria x ananassa HOM05D004208 ORTHO05D005156 4.8e-92 342.4 460 45.7
MD05G1197100 Malus domestica HOM05D004208 ORTHO05D005156 4.8e-92 342.4 499 45.3
Peaxi162Scf00118g00111 Petunia axillaris HOM05D004208 ORTHO05D005156 6.3e-92 342.0 397 56.9
Phvul.005G002100 Phaseolus vulgaris HOM05D004208 ORTHO05D005156 2.4e-91 340.1 493 44.8
HanXRQChr16g0512021 Helianthus annuus HOM05D004208 ORTHO05D005156 4.1e-91 339.3 491 44.2
Carub.0004s1781 Capsella rubella HOM05D004208 ORTHO05D005156 9.1e-91 338.2 478 44.8
Thhalv10001977m.g Eutrema salsugineum HOM05D004208 ORTHO05D005156 1.2e-90 337.8 487 45.4
SGA_v2.0_scaffold58G20323 Striga asiatica HOM05D004208 ORTHO05D005156 5.9e-90 335.5 409 51.8
FvH4_2g21470 Fragaria vesca HOM05D004208 ORTHO05D005156 1.7e-89 334.0 491 43.0
Potri.002G038300 Populus trichocarpa HOM05D004208 ORTHO05D005156 2.9e-89 333.2 496 45.8
TAR362G0204 Trochodendron aralioides HOM05D004208 ORTHO05D005156 2.5e-88 330.1 452 46.7
Nn3g19657 Nelumbo nucifera HOM05D004208 ORTHO05D005156 9.4e-88 328.2 493 43.8
Ca_26001_v3 Cicer arietinum L. HOM05D004208 ORTHO05D005156 3.0e-86 323.2 497 42.9
ATR0736G190 Amborella trichopoda HOM05D004208 ORTHO05D005156 5.2e-86 322.4 489 43.8
arahy.Tifrunner.gnm1.ann1.W57KUE Arachis hypogaea HOM05D004208 ORTHO05D005156 2.0e-85 320.5 523 41.3
VMungo1080G0701 Vigna mungo HOM05D004208 ORTHO05D005156 7.5e-85 318.5 495 43.2
AT2G20510 Arabidopsis thaliana HOM05D004208 ORTHO05D005156 2.8e-84 316.6 493 42.6
Cpa.g.sc81.94 Carica papaya HOM05D004208 ORTHO05D005156 3.7e-84 316.2 475 42.7
Medtr4g075680 Medicago truncatula HOM05D004208 ORTHO05D005156 3.7e-84 316.2 477 43.8
TWI34G1830 Tripterygium wilfordii HOM05D004208 ORTHO05D005156 2.4e-83 313.5 486 43.2
BcaB07g31584 Brassica carinata HOM05D004208 ORTHO05D005156 4.1e-83 312.8 480 42.7
THA.LOC104805532 Tarenaya hassleriana HOM05D004208 ORTHO05D005156 2.0e-82 310.5 489 43.1
Aqoxy2G03649 Aquilegia oxysepala HOM05D004208 ORTHO05D005156 3.5e-82 309.7 498 42.2
Sabra02G0030700 Salix brachista HOM05D004208 ORTHO05D005156 4.5e-82 309.3 453 44.8
BraA09t36939Z Brassica rapa HOM05D004208 ORTHO05D005156 6.6e-81 305.4 487 42.3
C09p15320 Brassica napus HOM05D004208 ORTHO05D005156 1.9e-80 303.9 475 42.5
Sp3g33730 Schrenkiella parvula HOM05D004208 ORTHO05D005156 1.9e-80 303.9 484 43.0
RcHm_v2.0_Chr4g0409381 Rosa chinensis HOM05D004208 ORTHO05D005156 2.5e-80 303.5 437 43.7
BolC9t54440H Brassica oleracea HOM05D004208 ORTHO05D005156 4.2e-80 302.8 483 42.9
BcaC04g22784 Brassica carinata HOM05D004208 ORTHO05D005156 9.5e-80 301.6 476 42.9
MBI10_g22594_MAGBIO Magnolia biondii HOM05D004208 ORTHO05D005156 9.5e-80 301.6 456 42.5
A09p12940 Brassica napus HOM05D004208 ORTHO05D005156 2.1e-79 300.4 486 42.0
MELO3C033986.2 Cucumis melo HOM05D004208 ORTHO05D005156 2.3e-78 297.0 575 37.9
A07p00220 Brassica napus HOM05D004208 ORTHO05D005156 8.9e-78 295.0 484 41.1
Carub.0003s3496 Capsella rubella HOM05D004208 ORTHO05D005156 1.5e-77 294.3 493 42.4
BcaB03g16846 Brassica carinata HOM05D004208 ORTHO05D005156 2.0e-77 293.9 487 41.1
Lalb_Chr15g0090311 Lupinus albus HOM05D004208 ORTHO05D005156 2.2e-76 290.4 490 40.6
BraA07t27815Z Brassica rapa HOM05D004208 ORTHO05D005156 3.7e-76 289.7 487 40.9
arahy.Tifrunner.gnm1.ann1.M6MGA2 Arachis hypogaea HOM05D004208 ORTHO05D005156 4.9e-76 289.3 480 41.5
CARHR130310 Cardamine hirsuta HOM05D004208 ORTHO05D005156 8.3e-76 288.5 478 42.9
Medtr4g029490 Medicago truncatula HOM05D004208 ORTHO05D005156 1.4e-75 287.7 471 40.1
FAN12G3775 Fragaria x ananassa HOM05D004208 ORTHO05D005156 2.4e-75 287.0 535 38.9
C07p00510 Brassica napus HOM05D004208 ORTHO05D005156 3.1e-75 286.6 470 40.9
FAN12G0345 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.2e-74 284.6 535 38.7
Zm00001eb111900 Zea mays HOM05D004208 ORTHO05D005156 1.6e-74 284.3 462 41.3
CSS0015888 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 2.7e-74 283.5 450 43.3
TPR.G5025 Trifolium pratense HOM05D004208 ORTHO05D005156 2.7e-74 283.5 397 43.6
Oeu021968.1 Olea europaea HOM05D004208 ORTHO05D005156 5.0e-73 279.3 483 41.6
BcaB08g34912 Brassica carinata HOM05D004208 ORTHO05D005156 1.1e-72 278.1 463 41.3
ECA236G3853 Erigeron canadensis HOM05D004208 ORTHO05D000364 1.2e-71 274.6 479 39.9
BcaC06g36740 Brassica carinata HOM05D004208 ORTHO05D005156 8.0e-71 271.9 482 39.8
BolC7t40497H Brassica oleracea HOM05D004208 ORTHO05D005156 1.0e-70 271.6 487 39.8
HPP92_012187 Vanilla planifolia HOM05D004208 ORTHO05D005156 9.8e-69 265.0 453 41.3
CDE04G1955 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 7.0e-67 258.8 387 43.9
Os07g0409700 Oryza sativa ssp. japonica HOM05D004208 ORTHO05D005156 3.5e-66 256.5 451 39.2
SEGI_36648 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 1.8e-62 244.2 372 43.8
Sc05g0000700 Simmondsia chinensis HOM05D004208 ORTHO05D005156 3.4e-61 240.0 355 45.6
Lj6g0013651 Lotus japonicus HOM05D004208 ORTHO05D005156 1.1e-59 235.0 490 36.5
PGSC0003DMG400022489 Solanum tuberosum HOM05D004208 ORTHO05D005156 1.1e-56 224.9 215 59.5
SMO353G0191 Selaginella moellendorffii HOM05D004208 ORTHO05D005156 2.6e-53 213.8 435 35.4
CBR_g30902 Chara braunii HOM05D004208 ORTHO05D005156 6.6e-49 199.1 456 32.9
ClCG01G005870 Citrullus lanatus HOM05D004208 ORTHO05D005156 1.1e-48 198.4 215 52.6
BcaC07g41210 Brassica carinata HOM05D004208 ORTHO05D005156 7.3e-48 195.7 392 38.8
CAN.G279.25 Capsicum annuum HOM05D004208 ORTHO05D005156 1.8e-46 191.0 176 67.6
Mapoly0070s0010 Marchantia polymorpha HOM05D004208 ORTHO05D005156 4.4e-45 186.4 369 36.3
unitig_746.g26574 Utricularia gibba HOM05D004208 ORTHO05D005156 1.1e-43 181.8 222 50.0
Pp3c12_7570 Physcomitrium patens HOM05D004208 ORTHO05D005156 1.4e-43 181.4 345 35.9
Pp3c4_19960 Physcomitrium patens HOM05D004208 ORTHO05D005156 9.2e-43 178.7 355 36.1
AagrBONN_evm.TU.Sc2ySwM_344.3623 Anthoceros agrestis HOM05D004208 ORTHO05D005156 1.3e-41 174.9 301 39.2
Lalb_Chr06g0171061 Lupinus albus HOM05D004208 ORTHO05D005156 2.3e-33 147.5 176 50.6
Lalb_Chr06g0171071 Lupinus albus HOM05D004208 ORTHO05D005156 3.0e-33 147.1 313 37.4
SHI09778 Sapria himalayana HOM05D004208 ORTHO05D005156 2.1e-31 141.0 275 38.2
Actinidia37513 Actinidia chinensis HOM05D004208 ORTHO05D005156 1.2e-26 125.2 156 48.1
HanXRQChr10g0294161 Helianthus annuus HOM05D004208 ORTHO05D005156 3.9e-25 120.2 238 38.7
Rhsim01G0263500 Rhododendron simsii HOM05D004208 ORTHO05D005156 1.2e-21 108.6 122 56.6
SEGI_05587 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 9.9e-21 105.5 135 45.2
MCO02G332 Micromonas commoda HOM05D004208 ORTHO05D005156 6.0e-18 96.3 247 29.1
Aqoxy5G04369 Aquilegia oxysepala HOM05D004870 ORTHO05D006061 9.6e-16 89.0 116 48.3
Cre16.g660800 Chlamydomonas reinhardtii HOM05D004208 ORTHO05D005156 2.8e-15 87.4 244 25.8
PRCOL_00004598 Prasinoderma coloniale HOM05D004208 ORTHO05D005156 2.6e-13 80.9 161 33.5
RcHm_v2.0_Chr5g0013581 Rosa chinensis HOM05D004208 ORTHO05D005156 3.4e-13 80.5 85 48.2
Glyma.09G002800 Glycine max HOM05D004208 ORTHO05D005156 7.6e-13 79.3 65 60.0
CDE04G1040 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 7.1e-11 72.8 93 44.1
Atru.chr3.4028 Acer truncatum HOM05D004208 ORTHO05D005156 2.2e-07 61.2 56 57.1
SEGI_40921 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 8.2e-07 59.3 34 67.6


User provided reference genes

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