Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0007790g0010 Nicotiana tabacum HOM05D004858 ORTHO05D005600 4.4e-56 221.1 114 100.0
Solyc02g091880.4 Solanum lycopersicum HOM05D004858 ORTHO05D005600 1.3e-36 156.4 90 85.6
Sopen02g036450 Solanum pennellii HOM05D004858 ORTHO05D005600 1.3e-36 156.4 90 85.6
Peaxi162Scf00096g01525 Petunia axillaris HOM05D004858 ORTHO05D005600 5.6e-35 151.0 90 82.2
CAN.G1061.6 Capsicum annuum HOM05D004858 ORTHO05D005600 7.3e-35 150.6 90 81.1
Nitab4.5_0000396g0060 Nicotiana tabacum HOM05D004858 ORTHO05D005600 1.3e-31 139.8 90 82.2
HanXRQChr14g0447621 Helianthus annuus HOM05D004858 ORTHO05D005600 2.4e-30 135.6 90 73.3
Lsat_1_v5_gn_2_81581 Lactuca sativa HOM05D004858 ORTHO05D005600 5.4e-30 134.4 90 73.3
HanXRQChr07g0203771 Helianthus annuus HOM05D004858 ORTHO05D005600 9.2e-30 133.7 90 71.1
SGA_v2.0_scaffold121G33088 Striga asiatica HOM05D004858 ORTHO05D005600 9.2e-30 133.7 92 71.7
unitig_37.g12385 Utricularia gibba HOM05D004858 ORTHO05D005600 1.2e-29 133.3 90 74.4
ECA238G2402 Erigeron canadensis HOM05D004858 ORTHO05D005600 1.6e-29 132.9 90 76.7
SalBow3G1594 Salvia bowleyana HOM05D004858 ORTHO05D005600 2.1e-29 132.5 92 75.0
SalBow3G4557 Salvia bowleyana HOM05D004858 ORTHO05D005600 2.1e-29 132.5 92 75.0
Migut.L00438 Erythranthe guttata HOM05D004858 ORTHO05D005600 1.7e-28 129.4 92 70.7
Nitab4.5_0026287g0010 Nicotiana tabacum HOM05D004858 ORTHO05D005600 3.9e-28 128.3 89 70.8
HanXRQChr09g0263081 Helianthus annuus HOM05D004858 ORTHO05D005600 5.1e-28 127.9 90 70.0
unitig_46.g18678 Utricularia gibba HOM05D004858 ORTHO05D005600 5.1e-28 127.9 92 70.7
ECA232G2479 Erigeron canadensis HOM05D004858 ORTHO05D005600 1.1e-27 126.7 91 70.3
Oeu061526.2 Olea europaea HOM05D004858 ORTHO05D005600 1.5e-27 126.3 91 68.1
MSTRG.23644 Avicennia marina HOM05D004858 ORTHO05D005600 7.3e-27 124.0 92 69.6
Lsat_1_v5_gn_4_159121 Lactuca sativa HOM05D004858 ORTHO05D005600 9.6e-27 123.6 90 70.0
Oeu014311.1 Olea europaea HOM05D004858 ORTHO05D005600 1.2e-26 123.2 91 69.2
CSS0041224 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 3.6e-26 121.7 90 67.8
CSS0047057 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 3.6e-26 121.7 90 67.8
Peaxi162Scf00118g01314 Petunia axillaris HOM05D004858 ORTHO05D005600 4.7e-26 121.3 90 67.8
PGSC0003DMG400030628 Solanum tuberosum HOM05D004858 ORTHO05D005600 1.4e-25 119.8 75 81.3
Hma1.2p1_1953F.1_g308860 Hydrangea macrophylla HOM05D004858 ORTHO05D005600 2.4e-25 119.0 92 68.5
Dinv23069 Davidia involucrata HOM05D004858 ORTHO05D005600 1.2e-24 116.7 90 65.6
DCAR_025838 Daucus carota HOM05D004858 ORTHO05D005600 2.6e-24 115.5 91 65.9
Manes.13G106700 Manihot esculenta HOM05D004858 ORTHO05D005600 3.4e-24 115.2 92 64.1
Rhsim08G0089100 Rhododendron simsii HOM05D004858 ORTHO05D005600 3.4e-24 115.2 90 64.4
Actinidia36402 Actinidia chinensis HOM05D004858 ORTHO05D005600 4.4e-24 114.8 90 68.9
GSVIVG01006593001 Vitis vinifera HOM05D004858 ORTHO05D005600 4.4e-24 114.8 90 62.2
CiPaw.08G148200 Carya illinoinensis HOM05D004858 ORTHO05D005600 7.6e-24 114.0 91 69.2
Medtr4g097800 Medicago truncatula HOM05D004858 ORTHO05D005600 7.6e-24 114.0 91 63.7
CDE01G0584 Ceratophyllum demersum HOM05D004858 ORTHO05D005600 9.9e-24 113.6 90 68.9
MD02G1193900 Malus domestica HOM05D004858 ORTHO05D005600 2.2e-23 112.5 91 64.8
Aqoxy6G01531 Aquilegia oxysepala HOM05D004858 ORTHO05D005600 2.9e-23 112.1 92 62.0
CANSAT01G1371 Cannabis sativa HOM05D004858 ORTHO05D005600 2.9e-23 112.1 90 65.6
Nn5g30705 Nelumbo nucifera HOM05D004858 ORTHO05D005600 3.8e-23 111.7 99 61.6
Lj4g0010254 Lotus japonicus HOM05D004858 ORTHO05D005600 6.4e-23 110.9 91 62.6
CiPaw.07G039500 Carya illinoinensis HOM05D004858 ORTHO05D005600 8.4e-23 110.5 91 64.8
Psat4g088320 Pisum sativum HOM05D004858 ORTHO05D005600 1.1e-22 110.2 91 63.7
PGR102G0524 Punica granatum HOM05D004858 ORTHO05D005600 1.4e-22 109.8 90 62.2
CARHR246220 Cardamine hirsuta HOM05D004858 ORTHO05D005600 1.9e-22 109.4 90 61.1
Dinv26980 Davidia involucrata HOM05D004858 ORTHO05D005600 1.9e-22 109.4 90 66.7
TPR.G22417 Trifolium pratense HOM05D004858 ORTHO05D005600 1.9e-22 109.4 91 59.3
EL10Ac6g14949 Beta vulgaris HOM05D004858 ORTHO05D005600 2.4e-22 109.0 92 60.9
Carub.0007s0239 Capsella rubella HOM05D004858 ORTHO05D005600 2.4e-22 109.0 90 60.0
CDE02G3413 Ceratophyllum demersum HOM05D004858 ORTHO05D005600 2.4e-22 109.0 90 65.6
Thhalv10026651m.g Eutrema salsugineum HOM05D004858 ORTHO05D005600 2.4e-22 109.0 90 60.0
MBI16_g31809_MAGBIO Magnolia biondii HOM05D004858 ORTHO05D005600 2.4e-22 109.0 90 62.2
Os03g0772800 Oryza sativa ssp. japonica HOM05D004858 ORTHO05D005600 2.4e-22 109.0 90 60.0
PGSC0003DMG400017913 Solanum tuberosum HOM05D004858 ORTHO05D005600 2.4e-22 109.0 91 63.7
A08p22870 Brassica napus HOM05D004858 ORTHO05D005600 3.2e-22 108.6 90 60.0
CSS0011371 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 5.4e-22 107.8 91 60.4
AL7G12840 Arabidopsis lyrata HOM05D004858 ORTHO05D005600 7.1e-22 107.5 90 60.0
CsaV3_3G007040 Cucumis sativus L. HOM05D004858 ORTHO05D005600 7.1e-22 107.5 90 61.1
TAR628G1120 Trochodendron aralioides HOM05D004858 ORTHO05D005600 7.1e-22 107.5 91 61.5
AT4G37830 Arabidopsis thaliana HOM05D004858 ORTHO05D005600 9.3e-22 107.1 90 57.8
C01p01370 Brassica napus HOM05D004858 ORTHO05D005600 9.3e-22 107.1 90 56.7
Sp7g35470 Schrenkiella parvula HOM05D004858 ORTHO05D005600 9.3e-22 107.1 90 58.9
Prupe.6G213100 Prunus persica HOM05D004858 ORTHO05D005600 1.2e-21 106.7 91 61.5
arahy.Tifrunner.gnm1.ann1.J6YKXI Arachis hypogaea HOM05D004858 ORTHO05D005600 1.6e-21 106.3 95 60.0
arahy.Tifrunner.gnm1.ann1.YV33P0 Arachis hypogaea HOM05D004858 ORTHO05D005600 1.6e-21 106.3 91 61.5
Cpa.g.sc129.47 Carica papaya HOM05D004858 ORTHO05D005600 1.6e-21 106.3 90 57.8
Sed0006730 Sechium edule HOM05D004858 ORTHO05D005600 1.6e-21 106.3 90 60.0
Zm00001eb058950 Zea mays HOM05D004858 ORTHO05D005600 1.6e-21 106.3 86 62.8
AUR62003145 Chenopodium quinoa HOM05D004858 ORTHO05D005600 2.1e-21 105.9 92 60.9
Eucgr.I00649 Eucalyptus grandis HOM05D004858 ORTHO05D005600 2.1e-21 105.9 91 62.6
THA.LOC104804193 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 2.1e-21 105.9 90 58.9
VMungo0251G0206 Vigna mungo HOM05D004858 ORTHO05D005600 2.1e-21 105.9 91 62.6
PGSC0003DMG400030258 Solanum tuberosum HOM05D004858 ORTHO05D005600 2.7e-21 105.5 93 62.4
BolC1t00134H Brassica oleracea HOM05D004858 ORTHO05D005600 3.5e-21 105.1 90 55.6
Ca_22084_v3 Cicer arietinum L. HOM05D004858 ORTHO05D005600 3.5e-21 105.1 93 62.4
ClCG10G008050 Citrullus lanatus HOM05D004858 ORTHO05D005600 3.5e-21 105.1 90 60.0
Lalb_Chr09g0329381 Lupinus albus HOM05D004858 ORTHO05D005600 3.5e-21 105.1 93 60.2
Manes.12G119200 Manihot esculenta HOM05D004858 ORTHO05D005600 3.5e-21 105.1 93 61.3
Nn6g34570 Nelumbo nucifera HOM05D004858 ORTHO05D005600 3.5e-21 105.1 90 60.0
AUR62007965 Chenopodium quinoa HOM05D004858 ORTHO05D005600 4.6e-21 104.8 92 59.8
Cc07_g07610 Coffea canephora HOM05D004858 ORTHO05D005600 6.0e-21 104.4 92 62.0
Haze_03960 Corylus avellana HOM05D004858 ORTHO05D005600 7.8e-21 104.0 91 60.4
Glyma.05G110100 Glycine max HOM05D004858 ORTHO05D005600 7.8e-21 104.0 91 62.6
TAR381G0631 Trochodendron aralioides HOM05D004858 ORTHO05D005600 7.8e-21 104.0 90 62.2
Cfa006798 Carpinus fangiana HOM05D004858 ORTHO05D005600 1.0e-20 103.6 91 59.3
Gorai.003G034000 Gossypium raimondii HOM05D004858 ORTHO05D005600 1.0e-20 103.6 90 57.8
Lalb_Chr16g0385901 Lupinus albus HOM05D004858 ORTHO05D005600 1.0e-20 103.6 93 59.1
Atru.chr3.1087 Acer truncatum HOM05D004858 ORTHO05D005600 1.3e-20 103.2 91 59.3
BcaC01g00373 Brassica carinata HOM05D004858 ORTHO05D005600 1.3e-20 103.2 90 60.0
BolC3t20143H Brassica oleracea HOM05D004858 ORTHO05D005600 1.3e-20 103.2 90 60.0
COL.COLO4_11647 Corchorus olitorius HOM05D004858 ORTHO05D005600 1.3e-20 103.2 91 62.6
Duzib187G0061 Durio zibethinus HOM05D004858 ORTHO05D005600 1.3e-20 103.2 91 59.3
THA.LOC104807646 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 2.3e-20 102.4 90 60.0
Glyma.17G157000 Glycine max HOM05D004858 ORTHO05D005600 3.0e-20 102.1 91 61.5
Gohir.D03G032400 Gossypium hirsutum HOM05D004858 ORTHO05D005600 3.0e-20 102.1 90 57.8
Lalb_Chr05g0220461 Lupinus albus HOM05D004858 ORTHO05D005600 3.0e-20 102.1 92 55.4
ATR0767G115 Amborella trichopoda HOM05D004858 ORTHO05D005600 3.9e-20 101.7 89 57.3
Gohir.A02G148000 Gossypium hirsutum HOM05D004858 ORTHO05D005600 5.1e-20 101.3 90 56.7
Phvul.003G231600 Phaseolus vulgaris HOM05D004858 ORTHO05D005600 5.1e-20 101.3 91 60.4
QL06p038187 Quercus lobata HOM05D004858 ORTHO05D005600 6.6e-20 100.9 91 59.3
Solyc03g043850.3 Solanum lycopersicum HOM05D004858 ORTHO05D005600 6.6e-20 100.9 90 57.8
PSO675G0895 Papaver somniferum HOM05D004858 ORTHO05D005600 8.7e-20 100.5 90 57.8
DCAR_021459 Daucus carota HOM05D004858 ORTHO05D005600 1.5e-19 99.8 87 59.8
FvH4_1g18620 Fragaria vesca HOM05D004858 ORTHO05D005600 1.5e-19 99.8 91 60.4
FAN19G1409 Fragaria x ananassa HOM05D004858 ORTHO05D005600 1.5e-19 99.8 91 60.4
FAN26G1754 Fragaria x ananassa HOM05D004858 ORTHO05D005600 1.9e-19 99.4 91 60.4
THA.LOC104824932 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 1.9e-19 99.4 90 55.6
MBI16_g05028_MAGBIO Magnolia biondii HOM05D004858 ORTHO05D005600 2.5e-19 99.0 87 60.9
Aa31LG6G14730 Aethionema arabicum HOM05D004858 ORTHO05D005600 3.3e-19 98.6 117 46.2
FAN28G0049 Fragaria x ananassa HOM05D004858 ORTHO05D005600 3.3e-19 98.6 91 60.4
Thecc.01G079800 Theobroma cacao HOM05D004858 ORTHO05D005600 3.3e-19 98.6 95 58.9
Sabra07G0006800 Salix brachista HOM05D004858 ORTHO05D005600 4.3e-19 98.2 89 56.2
FAN23G1848 Fragaria x ananassa HOM05D004858 ORTHO05D005600 5.6e-19 97.8 91 59.3
Potri.007G008800 Populus trichocarpa HOM05D004858 ORTHO05D005600 5.6e-19 97.8 90 55.6
TWI74G1540 Tripterygium wilfordii HOM05D004858 ORTHO05D005600 7.3e-19 97.4 91 56.0
Gohir.D11G212400 Gossypium hirsutum HOM05D004858 ORTHO05D005600 9.6e-19 97.1 81 61.7
Gorai.007G228300 Gossypium raimondii HOM05D004858 ORTHO05D005600 9.6e-19 97.1 81 61.7
CiPaw.10G150100 Carya illinoinensis HOM05D004858 ORTHO05D005600 1.3e-18 96.7 64 73.4
Gohir.A11G210700 Gossypium hirsutum HOM05D004858 ORTHO05D005600 1.3e-18 96.7 91 59.3
RcHm_v2.0_Chr2g0109411 Rosa chinensis HOM05D004858 ORTHO05D005600 1.6e-18 96.3 91 58.2
Duzib147G0425 Durio zibethinus HOM05D004858 ORTHO05D005600 2.8e-18 95.5 91 57.1
Ciclev10026828m.g Citrus clementina HOM05D004858 ORTHO05D005600 3.6e-18 95.1 88 55.7
TWI77G0309 Tripterygium wilfordii HOM05D004858 ORTHO05D005600 3.6e-18 95.1 81 58.0
Nitab4.5_0002639g0030 Nicotiana tabacum HOM05D004858 ORTHO05D005600 4.8e-18 94.7 83 61.4
HPP92_024955 Vanilla planifolia HOM05D004858 ORTHO05D005600 4.8e-18 94.7 97 51.5
Sc16g0000840 Simmondsia chinensis HOM05D004858 ORTHO05D005600 1.1e-17 93.6 92 54.3
CSS0003752 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 4.0e-17 91.7 75 65.3
vmacro18001 Vaccinium macrocarpon HOM05D004858 ORTHO05D005600 1.5e-16 89.7 50 76.0
Duzib264G0490 Durio zibethinus HOM05D004858 ORTHO05D005600 2.6e-16 89.0 91 51.6
MD15G1304000 Malus domestica HOM05D004858 ORTHO05D005600 5.8e-16 87.8 91 53.8
Ah.03g139600 Amaranthus hybridus HOM05D004858 ORTHO05D005600 2.9e-15 85.5 77 62.3
HPP92_021258 Vanilla planifolia HOM05D000682 ORTHO05D000510 2.9e-15 85.5 58 63.8
BraA08t34250Z Brassica rapa HOM05D004858 ORTHO05D005600 4.6e-13 78.2 80 52.5
MELO3C014946.2 Cucumis melo HOM05D004858 ORTHO05D005600 3.9e-12 75.1 75 56.0
Sc03g0000690 Simmondsia chinensis HOM05D004858 ORTHO05D005600 3.9e-12 75.1 76 57.9
Mapoly0043s0104 Marchantia polymorpha HOM05D004858 ORTHO05D005600 5.1e-12 74.7 75 50.7
Hund16598 Selenicereus undatus HOM05D004858 ORTHO05D005600 5.6e-11 71.2 77 54.5
C03p79020 Brassica napus HOM05D004858 ORTHO05D005600 9.6e-11 70.5 75 53.3
Pp3c6_25050 Physcomitrium patens HOM05D004858 ORTHO05D005600 2.4e-09 65.9 67 46.3
Pp3c5_3360 Physcomitrium patens HOM05D004858 ORTHO05D005600 5.3e-09 64.7 84 40.5
BraA01t00120Z Brassica rapa HOM05D004858 ORTHO05D005600 4.5e-08 61.6 93 40.9
AagrBONN_evm.TU.Sc2ySwM_344.1653 Anthoceros agrestis HOM05D004858 ORTHO05D005600 7.6e-08 60.8 77 42.9
CBR_g50891 Chara braunii HOM05D004858 ORTHO05D005600 4.9e-07 58.2 94 38.3
vmacro22430 Vaccinium macrocarpon HOM05D004858 ORTHO05D005600 1.4e-06 56.6 40 60.0


User provided reference genes

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