Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0007788g0030 Nicotiana tabacum HOM05D000200 ORTHO05D286740 9.8e-33 143.3 96 100.0
Peaxi162Scf00043g00132 Petunia axillaris HOM05D000200 ORTHO05D000262 5.6e-12 74.3 45 82.2
CAN.G260.1 Capsicum annuum HOM05D000200 ORTHO05D000262 9.6e-12 73.6 45 80.0
Nitab4.5_0000326g0340 Nicotiana tabacum HOM05D000200 ORTHO05D000262 1.1e-10 70.1 43 79.1
Nitab4.5_0003288g0010 Nicotiana tabacum HOM05D000200 ORTHO05D000262 1.1e-10 70.1 43 79.1
PGSC0003DMG400014709 Solanum tuberosum HOM05D000200 ORTHO05D000262 1.1e-10 70.1 45 77.8
Solyc09g064200.4 Solanum lycopersicum HOM05D000200 ORTHO05D000262 1.8e-10 69.3 45 75.6
Sopen09g025420 Solanum pennellii HOM05D000200 ORTHO05D000262 1.8e-10 69.3 45 75.6
PGSC0003DMG400022027 Solanum tuberosum HOM05D000200 ORTHO05D000262 1.8e-10 69.3 45 75.6
Solyc06g008090.3 Solanum lycopersicum HOM05D000200 ORTHO05D000262 2.4e-10 68.9 45 75.6
Peaxi162Scf00183g00011 Petunia axillaris HOM05D000200 ORTHO05D000262 2.0e-09 65.9 45 73.3
Cpa.g.sc87.70 Carica papaya HOM05D000200 ORTHO05D000262 4.4e-09 64.7 45 66.7
Rhsim01G0259100 Rhododendron simsii HOM05D000200 ORTHO05D000262 5.8e-09 64.3 45 66.7
vmacro14783 Vaccinium macrocarpon HOM05D000200 ORTHO05D000262 5.8e-09 64.3 45 66.7
Dinv19254 Davidia involucrata HOM05D000200 ORTHO05D000262 9.9e-09 63.5 45 64.4
Oeu052096.1 Olea europaea HOM05D000200 ORTHO05D000262 9.9e-09 63.5 45 66.7
Cc01_g17540 Coffea canephora HOM05D000200 ORTHO05D000262 1.3e-08 63.2 45 64.4
HanXRQChr01g0014821 Helianthus annuus HOM05D000200 ORTHO05D000262 1.3e-08 63.2 45 64.4
ECA248G0139 Erigeron canadensis HOM05D000200 ORTHO05D000262 1.7e-08 62.8 45 64.4
Duzib211G0550 Durio zibethinus HOM05D000200 ORTHO05D000262 2.2e-08 62.4 45 66.7
Lsat_1_v5_gn_5_180001 Lactuca sativa HOM05D000200 ORTHO05D000262 2.2e-08 62.4 45 64.4
TAR633G1199 Trochodendron aralioides HOM05D000200 ORTHO05D000262 2.2e-08 62.4 45 64.4
Migut.D00494 Erythranthe guttata HOM05D000200 ORTHO05D000262 2.9e-08 62.0 45 64.4
DCAR_012616 Daucus carota HOM05D000200 ORTHO05D000262 3.8e-08 61.6 45 66.7
Gohir.A11G134500 Gossypium hirsutum HOM05D000200 ORTHO05D000262 3.8e-08 61.6 45 64.4
Gohir.D11G140700 Gossypium hirsutum HOM05D000200 ORTHO05D000262 3.8e-08 61.6 45 64.4
Ciclev10018480m.g Citrus clementina HOM05D000200 ORTHO05D000262 4.9e-08 61.2 44 63.6
Lj2C1139G2 Lonicera japonica HOM05D000200 ORTHO05D000262 4.9e-08 61.2 45 62.2
MBI07_g22387_MAGBIO Magnolia biondii HOM05D000320 ORTHO05D000532 4.9e-08 61.2 44 63.6
Psat3g050400 Pisum sativum HOM05D000200 ORTHO05D000262 4.9e-08 61.2 45 62.2
Potri.002G254300 Populus trichocarpa HOM05D000200 ORTHO05D000262 4.9e-08 61.2 45 64.4
Sabra02G0193400 Salix brachista HOM05D000200 ORTHO05D000262 4.9e-08 61.2 45 64.4
MSTRG.17531 Avicennia marina HOM05D000200 ORTHO05D000262 8.4e-08 60.5 43 62.8
FvH4_2g20160 Fragaria vesca HOM05D000200 ORTHO05D000262 8.4e-08 60.5 45 62.2
FAN15G3174 Fragaria x ananassa HOM05D000200 ORTHO05D000262 8.4e-08 60.5 45 62.2
FAN24G1990 Fragaria x ananassa HOM05D000200 ORTHO05D000262 8.4e-08 60.5 45 62.2
FAN27G2640 Fragaria x ananassa HOM05D000200 ORTHO05D000262 8.4e-08 60.5 45 62.2
RcHm_v2.0_Chr6g0285891 Rosa chinensis HOM05D000200 ORTHO05D000262 8.4e-08 60.5 45 62.2
VMungo0720G0278 Vigna mungo HOM05D000200 ORTHO05D000262 8.4e-08 60.5 45 62.2
Cpa.g.sc59.52 Carica papaya HOM05D000200 ORTHO05D000262 1.1e-07 60.1 42 64.3
Migut.N02239 Erythranthe guttata HOM05D000200 ORTHO05D000262 1.1e-07 60.1 45 64.4
Prupe.8G211100 Prunus persica HOM05D000200 ORTHO05D000262 1.1e-07 60.1 45 62.2
unitig_85.g27271 Utricularia gibba HOM05D000200 ORTHO05D000262 1.1e-07 60.1 43 62.8
MELO3C022403.2 Cucumis melo HOM05D000200 ORTHO05D000262 1.4e-07 59.7 45 62.2
CsaV3_6G007240 Cucumis sativus L. HOM05D000200 ORTHO05D000262 1.4e-07 59.7 45 62.2
Glyma.03G169500 Glycine max HOM05D000200 ORTHO05D000262 1.4e-07 59.7 45 62.2
Gorai.007G150900 Gossypium raimondii HOM05D000200 ORTHO05D000262 1.4e-07 59.7 45 62.2
TPR.G30854 Trifolium pratense HOM05D000200 ORTHO05D000262 1.4e-07 59.7 45 64.4
TWI09G1570 Tripterygium wilfordii HOM05D000200 ORTHO05D000262 1.4e-07 59.7 45 62.2
VMungo1383G2133 Vigna mungo HOM05D000200 ORTHO05D000262 1.4e-07 59.7 45 62.2
Aa31LG5G3380 Aethionema arabicum HOM05D000200 ORTHO05D000262 1.9e-07 59.3 43 60.5
Dinv43045 Davidia involucrata HOM05D000200 ORTHO05D000262 1.9e-07 59.3 45 64.4
Phvul.007G155000 Phaseolus vulgaris HOM05D000200 ORTHO05D000262 1.9e-07 59.3 45 62.2
ClCG06G001310 Citrullus lanatus HOM05D000200 ORTHO05D000262 2.4e-07 58.9 45 62.2
COL.COLO4_35511 Corchorus olitorius HOM05D000200 ORTHO05D000262 2.4e-07 58.9 45 62.2
DCAR_018532 Daucus carota HOM05D000200 ORTHO05D000262 2.4e-07 58.9 45 62.2
Nn1g03059 Nelumbo nucifera HOM05D000200 ORTHO05D000262 2.4e-07 58.9 45 62.2
TWI75G0124 Tripterygium wilfordii HOM05D000200 ORTHO05D000262 2.4e-07 58.9 45 60.0
Ciclev10004144m.g Citrus clementina HOM05D000200 ORTHO05D000262 3.2e-07 58.5 45 60.0
Glyma.19G170700 Glycine max HOM05D000200 ORTHO05D000262 3.2e-07 58.5 44 61.4
Manes.13G041800 Manihot esculenta HOM05D000200 ORTHO05D000262 3.2e-07 58.5 45 62.2
Atru.chr4.1852 Acer truncatum HOM05D000200 ORTHO05D000262 4.2e-07 58.2 45 62.2
Dinv29779 Davidia involucrata HOM05D000200 ORTHO05D000262 4.2e-07 58.2 45 60.0
Eucgr.H02875 Eucalyptus grandis HOM05D000200 ORTHO05D000262 4.2e-07 58.2 45 62.2
Medtr7g099290 Medicago truncatula HOM05D000200 ORTHO05D000262 4.2e-07 58.2 45 62.2
Os02g0816900 Oryza sativa ssp. japonica HOM05D000200 ORTHO05D000262 4.2e-07 58.2 45 57.8
Phvul.001G167900 Phaseolus vulgaris HOM05D000200 ORTHO05D000262 4.2e-07 58.2 45 60.0
Thecc.01G246200 Theobroma cacao HOM05D000200 ORTHO05D000262 4.2e-07 58.2 45 60.0
Thecc.04G218500 Theobroma cacao HOM05D000200 ORTHO05D000262 5.4e-07 57.8 45 57.8
Zm00001eb258890 Zea mays HOM05D000200 ORTHO05D000262 5.4e-07 57.8 45 55.6
MSTRG.12509 Avicennia marina HOM05D000200 ORTHO05D000262 7.1e-07 57.4 43 62.8
CiPaw.03G273000 Carya illinoinensis HOM05D000200 ORTHO05D000262 7.1e-07 57.4 45 60.0
Eucgr.H00833 Eucalyptus grandis HOM05D000200 ORTHO05D000262 7.1e-07 57.4 43 60.5
Glyma.10G041700 Glycine max HOM05D000200 ORTHO05D000262 7.1e-07 57.4 45 60.0
MD10G1172900 Malus domestica HOM05D000200 ORTHO05D000262 7.1e-07 57.4 45 57.8
Manes.03G155500 Manihot esculenta HOM05D000200 ORTHO05D000262 7.1e-07 57.4 45 62.2
GSVIVG01028469001 Vitis vinifera HOM05D000200 ORTHO05D000262 7.1e-07 57.4 45 62.2
arahy.Tifrunner.gnm1.ann1.8KS6DS Arachis hypogaea HOM05D000200 ORTHO05D000262 9.3e-07 57.0 45 57.8
arahy.Tifrunner.gnm1.ann1.SHPC4Z Arachis hypogaea HOM05D000200 ORTHO05D000262 9.3e-07 57.0 45 57.8
CDE02G0729 Ceratophyllum demersum HOM05D000200 ORTHO05D000262 9.3e-07 57.0 45 60.0
CDE09G0138 Ceratophyllum demersum HOM05D000200 ORTHO05D000262 9.3e-07 57.0 45 60.0
Haze_24731 Corylus avellana HOM05D000200 ORTHO05D000262 9.3e-07 57.0 45 62.2
Thhalv10006554m.g Eutrema salsugineum HOM05D000200 ORTHO05D000262 9.3e-07 57.0 43 62.8
Glyma.13G128700 Glycine max HOM05D000200 ORTHO05D000262 9.3e-07 57.0 44 59.1
Hma1.2p1_1241F.1_g269800 Hydrangea macrophylla HOM05D000200 ORTHO05D000262 9.3e-07 57.0 45 60.0
Lalb_Chr21g0314181 Lupinus albus HOM05D000200 ORTHO05D000262 9.3e-07 57.0 45 57.8
MD05G1184900 Malus domestica HOM05D000200 ORTHO05D000262 9.3e-07 57.0 44 56.8
PGR083G1041 Punica granatum HOM05D000200 ORTHO05D000262 9.3e-07 57.0 45 60.0
Hund05505 Selenicereus undatus HOM05D000200 ORTHO05D000262 9.3e-07 57.0 45 60.0
SGA_v2.0_scaffold42G16165 Striga asiatica HOM05D000200 ORTHO05D000262 9.3e-07 57.0 42 66.7
Aa31LG2G21660 Aethionema arabicum HOM05D000200 ORTHO05D000262 1.2e-06 56.6 42 64.3
arahy.Tifrunner.gnm1.ann1.CGBE6F Arachis hypogaea HOM05D000200 ORTHO05D000262 1.2e-06 56.6 45 60.0
arahy.Tifrunner.gnm1.ann1.Q6MAYS Arachis hypogaea HOM05D000200 ORTHO05D000262 1.2e-06 56.6 45 60.0
BcaC04g21894 Brassica carinata HOM05D000200 ORTHO05D000262 1.2e-06 56.6 43 58.1
C09p26080 Brassica napus HOM05D000200 ORTHO05D000262 1.2e-06 56.6 43 58.1
BolC9t55511H Brassica oleracea HOM05D000200 ORTHO05D000262 1.2e-06 56.6 43 58.1
CARHR179530 Cardamine hirsuta HOM05D000200 ORTHO05D000262 1.2e-06 56.6 43 58.1
Thhalv10003130m.g Eutrema salsugineum HOM05D000200 ORTHO05D000262 1.2e-06 56.6 43 58.1
Medtr1g069290 Medicago truncatula HOM05D000200 ORTHO05D000262 1.2e-06 56.6 45 57.8
Nn311s46296 Nelumbo nucifera HOM05D000200 ORTHO05D000262 1.2e-06 56.6 45 62.2
Nn3g19838 Nelumbo nucifera HOM05D000200 ORTHO05D000262 1.2e-06 56.6 45 62.2
Psat6g063800 Pisum sativum HOM05D000200 ORTHO05D000262 1.2e-06 56.6 45 57.8
TPR.G22854 Trifolium pratense HOM05D000200 ORTHO05D000262 1.2e-06 56.6 45 57.8
TPR.G7554 Trifolium pratense HOM05D000200 ORTHO05D000262 1.2e-06 56.6 45 62.2
TWI73G0662 Tripterygium wilfordii HOM05D000200 ORTHO05D000262 1.2e-06 56.6 45 57.8
EL10Ac7g17739 Beta vulgaris HOM05D000200 ORTHO05D000262 1.6e-06 56.2 45 60.0
CSS0034388 Camellia sinensis var. sinensis HOM05D000200 ORTHO05D000262 1.6e-06 56.2 45 55.6
CANSAT78G1250 Cannabis sativa HOM05D000200 ORTHO05D000262 1.6e-06 56.2 38 65.8
Dinv27140 Davidia involucrata HOM05D000200 ORTHO05D000262 1.6e-06 56.2 45 55.6
CANSAT01G0471 Cannabis sativa HOM05D000200 ORTHO05D000262 2.1e-06 55.8 45 55.6
Manes.15G047900 Manihot esculenta HOM05D000200 ORTHO05D000262 2.1e-06 55.8 45 60.0
Sp1g02980 Schrenkiella parvula HOM05D000200 ORTHO05D000262 2.1e-06 55.8 43 60.5
AT5G43900 Arabidopsis thaliana HOM05D000200 ORTHO05D000262 2.7e-06 55.5 43 55.8
BcaB07g30994 Brassica carinata HOM05D000200 ORTHO05D000262 2.7e-06 55.5 43 55.8
BcaC07g42203 Brassica carinata HOM05D000200 ORTHO05D000262 2.7e-06 55.5 43 58.1
A09p68010 Brassica napus HOM05D000200 ORTHO05D000262 2.7e-06 55.5 43 58.1
C08p52450 Brassica napus HOM05D000200 ORTHO05D000262 2.7e-06 55.5 43 58.1
BolC8t52772H Brassica oleracea HOM05D000200 ORTHO05D000262 2.7e-06 55.5 43 58.1
BraA09t42136Z Brassica rapa HOM05D000200 ORTHO05D000262 2.7e-06 55.5 43 58.1
ECA247G1722 Erigeron canadensis HOM05D000200 ORTHO05D000262 2.7e-06 55.5 42 59.5
Sed0000280 Sechium edule HOM05D000200 ORTHO05D000262 2.7e-06 55.5 45 57.8
AL1G13760 Arabidopsis lyrata HOM05D000200 ORTHO05D000262 3.5e-06 55.1 43 60.5
BcaC06g31671 Brassica carinata HOM05D000200 ORTHO05D000262 3.5e-06 55.1 43 55.8
BcaC06g34611 Brassica carinata HOM05D000200 ORTHO05D000262 3.5e-06 55.1 43 55.8
A06p47630 Brassica napus HOM05D000200 ORTHO05D000262 3.5e-06 55.1 43 55.8
C07p26470 Brassica napus HOM05D000200 ORTHO05D000262 3.5e-06 55.1 43 55.8
BolC7t43176H Brassica oleracea HOM05D000200 ORTHO05D000262 3.5e-06 55.1 43 55.8
BraA06t27631Z Brassica rapa HOM05D000200 ORTHO05D000262 3.5e-06 55.1 43 55.8
CSS0028794 Camellia sinensis var. sinensis HOM05D000200 ORTHO05D000262 3.5e-06 55.1 45 53.3
Carub.0001s0331 Capsella rubella HOM05D000200 ORTHO05D000262 3.5e-06 55.1 43 60.5
Carub.0008s0469 Capsella rubella HOM05D000200 ORTHO05D000262 3.5e-06 55.1 43 55.8
CARHR003500 Cardamine hirsuta HOM05D000200 ORTHO05D000262 3.5e-06 55.1 43 60.5
Lj5g0016610 Lotus japonicus HOM05D000200 ORTHO05D000262 3.5e-06 55.1 45 55.6
Lalb_Chr20g0113391 Lupinus albus HOM05D000200 ORTHO05D000262 3.5e-06 55.1 37 62.2
Sabra08G0133100 Salix brachista HOM05D000200 ORTHO05D000262 3.5e-06 55.1 45 60.0
Sp2g08710 Schrenkiella parvula HOM05D000200 ORTHO05D000262 3.5e-06 55.1 43 55.8
TWI18G0133 Tripterygium wilfordii HOM05D000200 ORTHO05D000262 3.5e-06 55.1 43 58.1
A09p20660 Brassica napus HOM05D000200 ORTHO05D000262 4.6e-06 54.7 43 55.8
BraA09t37670Z Brassica rapa HOM05D000200 ORTHO05D000262 4.6e-06 54.7 43 55.8
Ca_09632_v3 Cicer arietinum L. HOM05D000200 ORTHO05D000262 4.6e-06 54.7 45 57.8
ClCG05G003810 Citrullus lanatus HOM05D000200 ORTHO05D000262 4.6e-06 54.7 45 57.8
Lalb_Chr02g0152891 Lupinus albus HOM05D000200 ORTHO05D000262 4.6e-06 54.7 45 57.8
Potri.008G174500 Populus trichocarpa HOM05D000200 ORTHO05D000262 4.6e-06 54.7 45 57.8
THA.LOC104801116 Tarenaya hassleriana HOM05D000200 ORTHO05D000262 4.6e-06 54.7 42 57.1
THA.LOC104804032 Tarenaya hassleriana HOM05D000200 ORTHO05D000262 4.6e-06 54.7 42 57.1
THA.LOC104814540 Tarenaya hassleriana HOM05D000200 ORTHO05D000262 4.6e-06 54.7 44 52.3
Ca_08763_v3 Cicer arietinum L. HOM05D000200 ORTHO05D000262 6.0e-06 54.3 45 57.8
Ah.15g091700 Amaranthus hybridus HOM05D000200 ORTHO05D000262 7.8e-06 53.9 45 55.6
AL8G16230 Arabidopsis lyrata HOM05D000200 ORTHO05D000262 7.8e-06 53.9 43 53.5
CiPaw.01G174700 Carya illinoinensis HOM05D000200 ORTHO05D000262 7.8e-06 53.9 45 57.8
AUR62025404 Chenopodium quinoa HOM05D000200 ORTHO05D000262 7.8e-06 53.9 45 55.6
Gohir.1Z049356 Gossypium hirsutum HOM05D000200 ORTHO05D000262 7.8e-06 53.9 45 51.1
Gohir.A10G119200 Gossypium hirsutum HOM05D000200 ORTHO05D000262 7.8e-06 53.9 45 51.1
Gohir.D10G147201 Gossypium hirsutum HOM05D000200 ORTHO05D000262 7.8e-06 53.9 45 51.1
Gorai.011G164300 Gossypium raimondii HOM05D000200 ORTHO05D000262 7.8e-06 53.9 45 51.1
PSO764G0301 Papaver somniferum HOM05D000200 ORTHO05D000262 7.8e-06 53.9 45 60.0
HPP92_025956 Vanilla planifolia HOM05D000200 ORTHO05D000262 7.8e-06 53.9 45 55.6


User provided reference genes

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