Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0007769g0050 Nicotiana tabacum HOM05D005482 ORTHO05D006502 0.0e+00 1149.4 594 100.0
Nitab4.5_0000128g0050 Nicotiana tabacum HOM05D005482 ORTHO05D006502 0.0e+00 1120.1 594 96.8
PGSC0003DMG400014586 Solanum tuberosum HOM05D005482 ORTHO05D006502 3.5e-282 974.5 615 83.6
Solyc05g051370.3 Solanum lycopersicum HOM05D005482 ORTHO05D006502 8.4e-276 953.4 698 74.8
Sopen05g029760 Solanum pennellii HOM05D005482 ORTHO05D006502 1.1e-275 953.0 698 75.1
CAN.G581.10 Capsicum annuum HOM05D005482 ORTHO05D006502 1.2e-274 949.5 602 84.2
Peaxi162Scf01142g00001 Petunia axillaris HOM05D005482 ORTHO05D006502 1.7e-255 885.9 601 80.0
Dinv36943 Davidia involucrata HOM05D005482 ORTHO05D006502 1.8e-209 733.0 616 65.3
Cc07_g13970 Coffea canephora HOM05D005482 ORTHO05D006502 1.7e-204 716.5 615 65.4
Thecc.01G089100 Theobroma cacao HOM05D005482 ORTHO05D006502 9.2e-198 694.1 604 62.4
Hma1.2p1_0369F.1_g137400 Hydrangea macrophylla HOM05D005482 ORTHO05D006502 8.6e-196 687.6 604 62.6
QL06p035944 Quercus lobata HOM05D005482 ORTHO05D006502 3.1e-193 679.1 607 61.4
Gorai.008G093000 Gossypium raimondii HOM05D005482 ORTHO05D006502 2.0e-192 676.4 599 61.1
SGA_v2.0_scaffold108G30927 Striga asiatica HOM05D005482 ORTHO05D006502 2.0e-192 676.4 633 61.6
Gohir.D12G079700 Gossypium hirsutum HOM05D005482 ORTHO05D006502 4.4e-192 675.2 599 60.8
Gohir.A12G084900 Gossypium hirsutum HOM05D005482 ORTHO05D006502 2.9e-191 672.5 599 60.4
CSS0020800 Camellia sinensis var. sinensis HOM05D005482 ORTHO05D006502 8.4e-191 671.0 644 60.2
COL.COLO4_27370 Corchorus olitorius HOM05D005482 ORTHO05D006502 1.4e-190 670.2 602 60.5
MSTRG.23386 Avicennia marina HOM05D005482 ORTHO05D006502 1.9e-190 669.8 611 63.0
MD01G1040900 Malus domestica HOM05D005482 ORTHO05D006502 4.8e-186 655.2 608 60.2
Prupe.6G203300 Prunus persica HOM05D005482 ORTHO05D006502 2.9e-183 646.0 617 60.3
Cfa006872 Carpinus fangiana HOM05D005482 ORTHO05D006502 7.1e-182 641.3 616 57.3
TAR625G0934 Trochodendron aralioides HOM05D005482 ORTHO05D006502 6.0e-181 638.3 613 59.9
Manes.12G125300 Manihot esculenta HOM05D005482 ORTHO05D006502 4.3e-179 632.1 600 58.5
MD15G1310400 Malus domestica HOM05D005482 ORTHO05D006502 3.6e-178 629.0 614 58.6
Duzib264G1263 Durio zibethinus HOM05D005482 ORTHO05D006502 6.9e-177 624.8 605 57.5
vmacro18548 Vaccinium macrocarpon HOM05D005482 ORTHO05D006502 1.5e-176 623.6 628 56.8
FAN23G0007 Fragaria x ananassa HOM05D005482 ORTHO05D006502 9.9e-176 620.9 614 57.8
Oeu042113.2 Olea europaea HOM05D005482 ORTHO05D006502 6.4e-175 618.2 614 58.5
FvH4_1g19490 Fragaria vesca HOM05D005482 ORTHO05D006502 1.4e-174 617.1 614 57.7
FAN19G3176 Fragaria x ananassa HOM05D005482 ORTHO05D006502 3.2e-174 615.9 614 57.3
FAN28G0477 Fragaria x ananassa HOM05D005482 ORTHO05D006502 5.5e-174 615.1 618 57.0
CiPaw.08G141000 Carya illinoinensis HOM05D005482 ORTHO05D006502 1.6e-173 613.6 613 57.1
Sed0012268 Sechium edule HOM05D005482 ORTHO05D006502 1.6e-173 613.6 613 56.9
Lj2A532G30 Lonicera japonica HOM05D005482 ORTHO05D006502 1.0e-172 610.9 605 56.4
TWI74G1080 Tripterygium wilfordii HOM05D005482 ORTHO05D006502 4.0e-169 599.0 601 57.1
CANSAT01G3178 Cannabis sativa HOM05D005482 ORTHO05D006502 2.0e-168 596.7 683 52.3
Migut.H02285 Erythranthe guttata HOM05D005482 ORTHO05D006502 5.8e-168 595.1 630 56.7
Dinv13587 Davidia involucrata HOM05D005482 ORTHO05D006502 2.2e-167 593.2 506 65.4
Rhsim08G0017200 Rhododendron simsii HOM05D005482 ORTHO05D006502 2.2e-167 593.2 619 55.3
TWI77G0993 Tripterygium wilfordii HOM05D005482 ORTHO05D006502 7.1e-166 588.2 601 56.9
Potri.007G011800 Populus trichocarpa HOM05D005482 ORTHO05D006502 2.1e-165 586.6 603 56.2
CSS0030560 Camellia sinensis var. sinensis HOM05D005482 ORTHO05D006502 2.7e-165 586.3 562 60.3
THA.LOC104798625 Tarenaya hassleriana HOM05D005482 ORTHO05D006502 3.0e-164 582.8 608 57.1
HanXRQChr12g0368991 Helianthus annuus HOM05D005482 ORTHO05D006502 3.9e-164 582.4 619 56.9
DCAR_003442 Daucus carota HOM05D005482 ORTHO05D006502 1.9e-163 580.1 612 54.2
Eucgr.H02447 Eucalyptus grandis HOM05D005482 ORTHO05D006502 1.4e-161 573.9 631 53.6
CiPaw.07G046300 Carya illinoinensis HOM05D005482 ORTHO05D006502 1.5e-160 570.5 565 57.2
FAN26G3253 Fragaria x ananassa HOM05D005482 ORTHO05D006502 1.5e-160 570.5 587 56.0
Sc03g0000430 Simmondsia chinensis HOM05D005482 ORTHO05D006502 8.5e-159 564.7 607 54.0
CsaV3_6G044940 Cucumis sativus L. HOM05D005482 ORTHO05D006502 9.3e-158 561.2 618 53.4
RcHm_v2.0_Chr2g0110941 Rosa chinensis HOM05D005482 ORTHO05D006502 1.2e-157 560.8 585 54.9
SalBow3G1020 Salvia bowleyana HOM05D005482 ORTHO05D006502 1.8e-156 557.0 566 59.2
Cpa.g.sc55.13 Carica papaya HOM05D005482 ORTHO05D006502 5.1e-156 555.4 616 54.4
Sabra07G0009200 Salix brachista HOM05D005482 ORTHO05D006502 5.1e-156 555.4 618 53.4
Aa31LG3G16620 Aethionema arabicum HOM05D005482 ORTHO05D006502 6.9e-153 545.0 617 53.8
PSO170G0154 Papaver somniferum HOM05D005482 ORTHO05D006502 1.3e-151 540.8 640 51.6
PSO210G6830 Papaver somniferum HOM05D005482 ORTHO05D006502 5.0e-151 538.9 620 51.9
ClCG01G018310 Citrullus lanatus HOM05D005482 ORTHO05D006502 1.1e-150 537.7 615 52.5
Nn1g05603 Nelumbo nucifera HOM05D005482 ORTHO05D006502 1.4e-150 537.3 615 52.0
PGR102G1704 Punica granatum HOM05D005482 ORTHO05D006502 4.2e-150 535.8 603 52.7
CARHR279520 Cardamine hirsuta HOM05D005482 ORTHO05D006502 1.4e-148 530.8 614 51.6
Atru.chr3.678 Acer truncatum HOM05D005482 ORTHO05D006502 1.1e-147 527.7 614 52.0
Lalb_Chr16g0381591 Lupinus albus HOM05D005482 ORTHO05D006502 1.1e-147 527.7 607 52.4
Atru.chr3.724 Acer truncatum HOM05D005482 ORTHO05D006502 5.7e-147 525.4 614 51.8
arahy.Tifrunner.gnm1.ann1.52LQAS Arachis hypogaea HOM05D005482 ORTHO05D006502 5.7e-147 525.4 662 49.4
arahy.Tifrunner.gnm1.ann1.HVQN9F Arachis hypogaea HOM05D005482 ORTHO05D006502 5.7e-147 525.4 662 49.4
Thhalv10003865m.g Eutrema salsugineum HOM05D005482 ORTHO05D006502 1.1e-145 521.2 611 51.2
AT5G65540 Arabidopsis thaliana HOM05D005482 ORTHO05D006502 1.8e-145 520.4 616 50.8
Ciclev10025202m.g Citrus clementina HOM05D005482 ORTHO05D006502 2.4e-145 520.0 639 50.2
MBI16_g31257_MAGBIO Magnolia biondii HOM05D005482 ORTHO05D006502 4.1e-145 519.2 621 51.4
EL10Ac6g15187 Beta vulgaris HOM05D005482 ORTHO05D006502 9.1e-145 518.1 604 50.8
Lsat_1_v5_gn_3_62981 Lactuca sativa HOM05D005482 ORTHO05D006502 1.2e-144 517.7 614 52.1
Hund16521 Selenicereus undatus HOM05D005482 ORTHO05D006502 2.6e-144 516.5 601 51.2
AL8G43140 Arabidopsis lyrata HOM05D005482 ORTHO05D006502 3.4e-144 516.2 619 50.4
Sp2g28640 Schrenkiella parvula HOM05D005482 ORTHO05D006502 4.5e-144 515.8 617 50.9
Carub.0008s2640 Capsella rubella HOM05D005482 ORTHO05D006502 1.1e-142 511.1 620 49.7
MELO3C007709.2 Cucumis melo HOM05D005482 ORTHO05D006502 1.4e-142 510.8 585 52.3
Sabra15G0071300 Salix brachista HOM05D005482 ORTHO05D006502 1.0e-140 504.6 603 51.7
AUR62017985 Chenopodium quinoa HOM05D005482 ORTHO05D006502 2.6e-139 500.0 603 49.3
Aqoxy5G01366 Aquilegia oxysepala HOM05D005482 ORTHO05D006502 3.3e-139 499.6 627 50.9
Ah.03g139850 Amaranthus hybridus HOM05D005482 ORTHO05D006502 1.0e-135 488.0 607 50.4
C03p60440 Brassica napus HOM05D005482 ORTHO05D006502 5.0e-135 485.7 617 48.6
BolC3t18305H Brassica oleracea HOM05D005482 ORTHO05D006502 5.0e-135 485.7 617 48.6
Haze_03890 Corylus avellana HOM05D005482 ORTHO05D006502 1.9e-134 483.8 474 56.8
BraA06t26164Z Brassica rapa HOM05D005482 ORTHO05D006502 4.0e-132 476.1 620 47.1
Psat3g169840 Pisum sativum HOM05D005482 ORTHO05D006502 5.2e-132 475.7 600 50.3
A06p32390 Brassica napus HOM05D005482 ORTHO05D006502 2.6e-131 473.4 620 46.9
ECA246G0291 Erigeron canadensis HOM05D005482 ORTHO05D006502 1.0e-127 461.5 451 57.6
unitig_736.g22591 Utricularia gibba HOM05D005482 ORTHO05D006502 2.9e-127 459.9 572 51.2
Lj2g0006088 Lotus japonicus HOM05D005482 ORTHO05D006502 1.5e-126 457.6 637 47.6
Ca_25228_v3 Cicer arietinum L. HOM05D005482 ORTHO05D006502 1.6e-125 454.1 599 48.4
Oeu017109.1 Olea europaea HOM05D005482 ORTHO05D006502 4.0e-124 449.5 409 59.2
Glyma.09G200000 Glycine max HOM05D005482 ORTHO05D006502 2.2e-122 443.7 623 47.0
Glyma.01G021600 Glycine max HOM05D005482 ORTHO05D006502 4.8e-122 442.6 613 47.3
VMungo1215G0139 Vigna mungo HOM05D005482 ORTHO05D006502 6.5e-119 432.2 605 47.8
Actinidia24562 Actinidia chinensis HOM05D005482 ORTHO05D006502 1.1e-113 414.8 411 58.4
Phvul.002G145800 Phaseolus vulgaris HOM05D005482 ORTHO05D006502 3.1e-113 413.3 603 46.9
Medtr5g031750 Medicago truncatula HOM05D005482 ORTHO05D006502 9.5e-110 401.7 599 45.9
Hma1.2p1_0369F.1_g137390 Hydrangea macrophylla HOM05D005482 ORTHO05D006502 3.6e-109 399.8 360 60.0
HPP92_017563 Vanilla planifolia HOM05D005482 ORTHO05D006502 8.3e-106 388.7 612 43.8
BcaC01g02786 Brassica carinata HOM05D005482 ORTHO05D006502 3.6e-101 373.2 646 42.9
GSVIVG01002523001 Vitis vinifera HOM05D005482 ORTHO05D006502 2.1e-85 320.9 291 57.4
Os03g0802300 Oryza sativa ssp. japonica HOM05D005482 ORTHO05D006502 1.4e-84 318.2 545 39.8
Zm00001eb061260 Zea mays HOM05D005482 ORTHO05D006502 2.1e-80 304.3 531 40.3
Solyc11g016980.3 Solanum lycopersicum HOM05D005482 ORTHO05D006502 1.1e-70 271.9 173 79.2
GSVIVG01002660001 Vitis vinifera HOM05D005482 ORTHO05D006502 1.5e-67 261.5 232 65.5
TPR.G7258 Trifolium pratense HOM05D005482 ORTHO05D006502 7.9e-56 222.6 268 48.9
TPR.G36831 Trifolium pratense HOM05D005482 ORTHO05D006502 5.6e-54 216.5 463 37.1
Pp3c20_16050 Physcomitrium patens HOM05D005482 ORTHO05D006502 1.8e-52 211.5 547 33.1
ATR0767G089 Amborella trichopoda HOM05D005482 ORTHO05D006502 9.3e-49 199.1 278 42.4
Solyc01g056590.2 Solanum lycopersicum HOM05D005482 ORTHO05D006502 6.0e-48 196.4 127 78.0
Oeu017110.1 Olea europaea HOM05D005482 ORTHO05D006502 1.5e-43 181.8 146 67.8
Haze_03887 Corylus avellana HOM05D005482 ORTHO05D006502 2.5e-41 174.5 124 68.5
TAR381G1343 Trochodendron aralioides HOM05D005482 ORTHO05D006502 1.5e-38 165.2 286 46.2
Actinidia28819 Actinidia chinensis HOM05D000138 ORTHO05D000078 1.5e-35 155.2 494 31.4
CiPaw.10G105100 Carya illinoinensis HOM05D005482 ORTHO05D006502 5.0e-34 150.2 113 65.5
ECA246G4867 Erigeron canadensis HOM05D005482 ORTHO05D006502 4.7e-32 143.7 133 64.7
CiPaw.01G172300 Carya illinoinensis HOM05D005482 ORTHO05D006502 2.3e-31 141.4 149 53.0
CDE07G2034 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 1.1e-30 139.0 102 66.7
CDE07G0659 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 1.1e-25 122.5 206 38.8
AagrBONN_evm.TU.Sc2ySwM_117.475 Anthoceros agrestis HOM05D005482 ORTHO05D006502 2.5e-25 121.3 617 26.7
Mapoly0105s0033 Marchantia polymorpha HOM05D005482 ORTHO05D006502 2.5e-25 121.3 581 23.6
SMO203G0252 Selaginella moellendorffii HOM05D005482 ORTHO05D006502 2.5e-25 121.3 594 25.1
BolC3t18285H Brassica oleracea HOM05D005482 ORTHO05D006502 7.2e-25 119.8 177 45.2
CiPaw.03G215800 Carya illinoinensis HOM05D005482 ORTHO05D006502 1.4e-23 115.5 75 72.0
C03p60240 Brassica napus HOM05D005482 ORTHO05D006502 1.7e-21 108.6 187 43.9
RcHm_v2.0_Chr2g0110871 Rosa chinensis HOM05D005482 ORTHO05D006502 3.5e-19 100.9 109 49.5
Solyc02g062815.1 Solanum lycopersicum HOM05D005482 ORTHO05D006502 8.5e-18 96.3 50 92.0
HanXRQChr04g0112001 Helianthus annuus HOM05D005482 ORTHO05D006502 1.5e-17 95.5 79 65.8
Sabra15G0079600 Salix brachista HOM05D005482 ORTHO05D006502 1.9e-17 95.1 79 62.0
BcaC01g02797 Brassica carinata HOM05D005482 ORTHO05D006502 2.7e-16 91.3 138 39.1
CDE07G1819 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 5.2e-15 87.0 69 55.1
ATR0767G001 Amborella trichopoda HOM05D005482 ORTHO05D006502 3.1e-12 77.8 155 41.3
TAR375G0200 Trochodendron aralioides HOM05D005482 ORTHO05D006502 2.7e-11 74.7 95 55.8
CDE07G1566 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 3.8e-10 70.9 150 40.7
BcaB04g20020 Brassica carinata HOM05D005482 ORTHO05D006502 2.5e-09 68.2 68 47.1


User provided reference genes

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