Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0007745g0040 Nicotiana tabacum HOM05D005021 ORTHO05D006824 0.0e+00 2773.8 1390 100.0
Nitab4.5_0001288g0150 Nicotiana tabacum HOM05D005021 ORTHO05D006824 0.0e+00 2702.9 1389 97.6
Solyc02g068720.3 Solanum lycopersicum HOM05D005021 ORTHO05D006824 0.0e+00 2637.1 1397 94.8
Sopen02g017890 Solanum pennellii HOM05D005021 ORTHO05D006824 0.0e+00 2634.8 1397 94.8
CAN.G149.8 Capsicum annuum HOM05D005021 ORTHO05D006824 0.0e+00 2574.3 1410 92.0
Dinv25918 Davidia involucrata HOM05D005021 ORTHO05D006824 0.0e+00 2361.3 1400 84.4
CSS0004737 Camellia sinensis var. sinensis HOM05D005021 ORTHO05D006824 0.0e+00 2346.6 1401 83.7
Cc09_g06010 Coffea canephora HOM05D005021 ORTHO05D006824 0.0e+00 2303.1 1403 82.3
Migut.M01986 Erythranthe guttata HOM05D005021 ORTHO05D006824 0.0e+00 2299.6 1405 82.2
Oeu060353.1 Olea europaea HOM05D005021 ORTHO05D006824 0.0e+00 2279.6 1423 80.3
Prupe.4G113100 Prunus persica HOM05D005021 ORTHO05D006824 0.0e+00 2279.6 1401 80.9
COL.COLO4_17653 Corchorus olitorius HOM05D005021 ORTHO05D006824 0.0e+00 2277.3 1400 80.9
Potri.012G124400 Populus trichocarpa HOM05D005021 ORTHO05D006824 0.0e+00 2274.6 1401 80.6
Thecc.02G008800 Theobroma cacao HOM05D005021 ORTHO05D006824 0.0e+00 2274.2 1400 80.9
Sabra12G0094200 Salix brachista HOM05D005021 ORTHO05D006824 0.0e+00 2265.7 1401 80.5
Gohir.A01G141263 Gossypium hirsutum HOM05D005021 ORTHO05D006824 0.0e+00 2259.6 1402 80.3
RcHm_v2.0_Chr5g0020301 Rosa chinensis HOM05D005021 ORTHO05D006824 0.0e+00 2259.6 1398 80.8
Gorai.002G164100 Gossypium raimondii HOM05D005021 ORTHO05D006824 0.0e+00 2256.5 1402 80.4
QL11p016313 Quercus lobata HOM05D005021 ORTHO05D006824 0.0e+00 2254.6 1400 80.4
SalBow8G3018 Salvia bowleyana HOM05D005021 ORTHO05D006824 0.0e+00 2253.8 1409 80.3
GSVIVG01012103001 Vitis vinifera HOM05D005021 ORTHO05D006824 0.0e+00 2251.1 1406 80.2
CANSAT35G0082 Cannabis sativa HOM05D005021 ORTHO05D006824 0.0e+00 2248.8 1401 80.1
Cfa000703 Carpinus fangiana HOM05D005021 ORTHO05D006824 0.0e+00 2248.0 1400 79.6
Gohir.D01G132500 Gossypium hirsutum HOM05D005021 ORTHO05D006824 0.0e+00 2247.2 1402 80.2
MD10G1231300 Malus domestica HOM05D005021 ORTHO05D006824 0.0e+00 2245.7 1399 80.6
Ciclev10014047m.g Citrus clementina HOM05D005021 ORTHO05D006824 0.0e+00 2243.4 1399 79.4
FvH4_3g12410 Fragaria vesca HOM05D005021 ORTHO05D006824 0.0e+00 2243.4 1398 80.3
HanXRQChr14g0447451 Helianthus annuus HOM05D005021 ORTHO05D006824 0.0e+00 2238.8 1397 80.1
Atru.chr10.559 Acer truncatum HOM05D005021 ORTHO05D006824 0.0e+00 2236.8 1400 79.4
TAR626G1325 Trochodendron aralioides HOM05D005021 ORTHO05D006824 0.0e+00 2231.8 1400 79.5
TWI38G0923 Tripterygium wilfordii HOM05D005021 ORTHO05D006824 0.0e+00 2226.4 1401 79.2
MD05G1250500 Malus domestica HOM05D005021 ORTHO05D006824 0.0e+00 2224.1 1401 79.5
Eucgr.D00052 Eucalyptus grandis HOM05D005021 ORTHO05D006824 0.0e+00 2222.6 1400 79.1
Cpa.g.sc30.159 Carica papaya HOM05D005021 ORTHO05D006824 0.0e+00 2220.7 1412 78.7
CiPaw.10G064100 Carya illinoinensis HOM05D005021 ORTHO05D006824 0.0e+00 2220.7 1399 78.8
ECA238G3003 Erigeron canadensis HOM05D005021 ORTHO05D006824 0.0e+00 2220.7 1398 79.6
DCAR_003775 Daucus carota HOM05D005021 ORTHO05D006824 0.0e+00 2218.7 1398 79.8
TWI38G0776 Tripterygium wilfordii HOM05D005021 ORTHO05D006824 0.0e+00 2217.2 1398 79.0
Glyma.20G019300 Glycine max HOM05D005021 ORTHO05D006824 0.0e+00 2211.4 1401 77.7
FAN21G1452 Fragaria x ananassa HOM05D005021 ORTHO05D006824 0.0e+00 2200.6 1398 79.0
Duzib248G0067 Durio zibethinus HOM05D005021 ORTHO05D006824 0.0e+00 2198.3 1358 80.5
Lj4g0005220 Lotus japonicus HOM05D005021 ORTHO05D006824 0.0e+00 2192.5 1403 77.6
Phvul.002G097500 Phaseolus vulgaris HOM05D005021 ORTHO05D006824 0.0e+00 2189.1 1405 77.1
Haze_06074 Corylus avellana HOM05D005021 ORTHO05D006824 0.0e+00 2187.1 1444 76.5
Nn7g38248 Nelumbo nucifera HOM05D005021 ORTHO05D006824 0.0e+00 2182.5 1437 77.0
Ca_18756_v3 Cicer arietinum L. HOM05D005021 ORTHO05D006824 0.0e+00 2181.4 1399 76.9
Psat7g129680 Pisum sativum HOM05D005021 ORTHO05D006824 0.0e+00 2181.0 1399 77.0
TPR.G38288 Trifolium pratense HOM05D005021 ORTHO05D006824 0.0e+00 2179.4 1399 77.0
ClCG01G009560 Citrullus lanatus HOM05D005021 ORTHO05D006824 0.0e+00 2177.9 1400 76.6
Sed0001856 Sechium edule HOM05D005021 ORTHO05D006824 0.0e+00 2167.1 1397 77.3
arahy.Tifrunner.gnm1.ann1.79RC6W Arachis hypogaea HOM05D005021 ORTHO05D006824 0.0e+00 2166.0 1493 73.1
Medtr4g084140 Medicago truncatula HOM05D005021 ORTHO05D006824 0.0e+00 2164.0 1401 76.4
Lalb_Chr16g0385181 Lupinus albus HOM05D005021 ORTHO05D006824 0.0e+00 2160.6 1403 76.5
Potri.015G124500 Populus trichocarpa HOM05D005021 ORTHO05D006824 0.0e+00 2159.8 1402 77.7
CsaV3_1G046230 Cucumis sativus L. HOM05D005021 ORTHO05D006824 0.0e+00 2158.6 1400 76.5
MELO3C021737.2 Cucumis melo HOM05D005021 ORTHO05D006824 0.0e+00 2158.3 1401 76.6
FAN25G1951 Fragaria x ananassa HOM05D005021 ORTHO05D006824 0.0e+00 2158.3 1414 77.4
PGR004G0612 Punica granatum HOM05D005021 ORTHO05D006824 0.0e+00 2144.4 1387 77.5
Lj1A1146G59 Lonicera japonica HOM05D005021 ORTHO05D006824 0.0e+00 2144.0 1418 77.8
Carub.0004s1679 Capsella rubella HOM05D005021 ORTHO05D006824 0.0e+00 2136.3 1419 76.3
Aa31LG9G16120 Aethionema arabicum HOM05D005021 ORTHO05D006824 0.0e+00 2133.6 1429 75.1
AL4G31120 Arabidopsis lyrata HOM05D005021 ORTHO05D006824 0.0e+00 2130.5 1415 76.1
THA.LOC104798554 Tarenaya hassleriana HOM05D005021 ORTHO05D006824 0.0e+00 2127.8 1408 75.7
Aqoxy1G01424 Aquilegia oxysepala HOM05D005021 ORTHO05D006824 0.0e+00 2126.7 1398 76.5
Thhalv10016146m.g Eutrema salsugineum HOM05D005021 ORTHO05D006824 0.0e+00 2126.7 1415 76.0
arahy.Tifrunner.gnm1.ann1.59QZXR Arachis hypogaea HOM05D005021 ORTHO05D006824 0.0e+00 2120.9 1489 72.0
BolC4t22962H Brassica oleracea HOM05D005021 ORTHO05D006824 0.0e+00 2120.9 1415 75.8
BcaB02g09478 Brassica carinata HOM05D005021 ORTHO05D006824 0.0e+00 2114.7 1415 75.6
A05p10630 Brassica napus HOM05D005021 ORTHO05D006824 0.0e+00 2113.6 1414 75.6
C04p13730 Brassica napus HOM05D005021 ORTHO05D006824 0.0e+00 2112.4 1415 75.5
BraA05t20004Z Brassica rapa HOM05D005021 ORTHO05D006824 0.0e+00 2112.0 1415 75.5
PSO675G8902 Papaver somniferum HOM05D005021 ORTHO05D006824 0.0e+00 2107.0 1403 76.1
Hma1.2p1_1005F.1_g246940 Hydrangea macrophylla HOM05D005021 ORTHO05D006824 0.0e+00 2097.0 1235 84.1
BcaB02g09480 Brassica carinata HOM05D005021 ORTHO05D006824 0.0e+00 2092.0 1425 74.9
vmacro03526 Vaccinium macrocarpon HOM05D005021 ORTHO05D006824 0.0e+00 2084.7 1699 65.3
AT2G35110 Arabidopsis thaliana HOM05D005021 ORTHO05D006824 0.0e+00 2082.0 1380 76.2
Manes.16G055900 Manihot esculenta HOM05D005021 ORTHO05D006824 0.0e+00 2065.0 1264 80.9
RhsimUnG0043400 Rhododendron simsii HOM05D005021 ORTHO05D006824 0.0e+00 2004.9 1312 77.5
AUR62037395 Chenopodium quinoa HOM05D005021 ORTHO05D006824 0.0e+00 1979.5 1337 74.6
SGA_v2.0_scaffold175G39355 Striga asiatica HOM05D005021 ORTHO05D006824 0.0e+00 1978.8 1381 74.2
AUR62041742 Chenopodium quinoa HOM05D005021 ORTHO05D006824 0.0e+00 1972.2 1337 74.1
Hund09140 Selenicereus undatus HOM05D005021 ORTHO05D006824 0.0e+00 1962.6 1340 74.2
unitig_748.g8077 Utricularia gibba HOM05D005021 ORTHO05D006824 0.0e+00 1962.2 1340 73.7
EL10Ac9g20953 Beta vulgaris HOM05D005021 ORTHO05D006824 0.0e+00 1898.6 1411 69.7
Os08g0544500 Oryza sativa ssp. japonica HOM05D005021 ORTHO05D006824 0.0e+00 1898.6 1380 68.9
Sc17g0003700 Simmondsia chinensis HOM05D005021 ORTHO05D006824 0.0e+00 1879.4 1202 77.6
Zm00001eb405230 Zea mays HOM05D005021 ORTHO05D006824 0.0e+00 1842.4 1376 67.9
ATR0752G031 Amborella trichopoda HOM05D005021 ORTHO05D006824 0.0e+00 1829.3 1404 66.0
Peaxi162Scf00149g00312 Petunia axillaris HOM05D005021 ORTHO05D006824 0.0e+00 1785.8 927 96.3
Ah.01g015830 Amaranthus hybridus HOM05D005021 ORTHO05D006824 0.0e+00 1743.0 1520 61.4
CDE05G3601 Ceratophyllum demersum HOM05D005021 ORTHO05D006824 0.0e+00 1472.6 1160 64.0
Lsat_1_v5_gn_2_63641 Lactuca sativa HOM05D005021 ORTHO05D006824 0.0e+00 1389.8 975 72.9
Sp4g17340 Schrenkiella parvula HOM05D005021 ORTHO05D006824 0.0e+00 1377.8 834 82.9
Mapoly0087s0075 Marchantia polymorpha HOM05D005021 ORTHO05D006824 0.0e+00 1376.7 1366 51.4
SMO367G0195 Selaginella moellendorffii HOM05D005021 ORTHO05D006824 0.0e+00 1320.4 1350 50.1
Pp3c1_6150 Physcomitrium patens HOM05D005021 ORTHO05D006824 0.0e+00 1302.3 1364 49.2
Pp3c11_1080 Physcomitrium patens HOM05D005021 ORTHO05D006824 0.0e+00 1296.2 1375 48.7
FAN16G3288 Fragaria x ananassa HOM05D005021 ORTHO05D006824 0.0e+00 1201.4 727 83.4
HPP92_017169 Vanilla planifolia HOM05D005021 ORTHO05D006824 0.0e+00 1198.0 878 67.3
Actinidia33677 Actinidia chinensis HOM05D005021 ORTHO05D006824 0.0e+00 1175.2 791 75.2
CARHR129260 Cardamine hirsuta HOM05D005021 ORTHO05D006824 0.0e+00 1164.4 815 71.9
VMungo0251G0795 Vigna mungo HOM05D005021 ORTHO05D006824 0.0e+00 1159.4 761 74.6
VMungo0251G3115 Vigna mungo HOM05D005021 ORTHO05D006824 6.1e-277 958.4 600 79.3
AagrBONN_evm.TU.Sc2ySwM_344.1422 Anthoceros agrestis HOM05D005021 ORTHO05D006824 2.7e-272 943.0 826 56.5
Potri.015G123900 Populus trichocarpa HOM05D005021 ORTHO05D006824 5.1e-247 859.0 601 72.2
Oeu060352.1 Olea europaea HOM05D005021 ORTHO05D006824 3.8e-218 763.1 496 78.4
QL11p016288 Quercus lobata HOM05D005021 ORTHO05D006824 3.2e-201 706.8 519 68.8
SHI31491 Sapria himalayana HOM05D005021 ORTHO05D006824 6.3e-189 666.0 523 64.4
CBR_g30692 Chara braunii HOM05D005021 ORTHO05D006824 1.1e-177 628.6 1489 28.9
BcaNung06473 Brassica carinata HOM05D005021 ORTHO05D006824 1.7e-154 551.6 533 56.8
HPP92_017178 Vanilla planifolia HOM05D005021 ORTHO05D006824 8.6e-138 496.1 382 67.0
SEGI_39898 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 3.3e-137 494.2 527 50.9
Medtr4g081610 Medicago truncatula HOM05D005021 ORTHO05D006824 4.2e-124 450.7 538 49.6
Psat0s5010g0080 Pisum sativum HOM05D005021 ORTHO05D006824 5.0e-101 374.0 226 77.9
Psat0s2371g0040 Pisum sativum HOM05D000434 ORTHO05D006824 4.6e-91 340.9 221 73.8
SEGI_00319 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 5.0e-85 320.9 203 76.4
Medtr4g081600 Medicago truncatula HOM05D005021 ORTHO05D006824 5.5e-84 317.4 418 44.5
Sp2g07020 Schrenkiella parvula HOM05D005021 ORTHO05D006824 2.5e-68 265.4 297 49.8
HPP92_017177 Vanilla planifolia HOM05D005021 ORTHO05D006824 5.4e-63 247.7 147 81.6
Psat0s5010g0040 Pisum sativum HOM05D005021 ORTHO05D004273 7.2e-52 210.7 139 73.4
SEGI_02164 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 1.9e-44 186.0 128 66.4
Oeu003620.1 Olea europaea HOM05D005021 ORTHO05D006824 4.9e-40 171.4 116 75.9
Potri.015G124200 Populus trichocarpa HOM05D005021 ORTHO05D006824 4.0e-34 151.8 133 63.2
BcaB07g31175 Brassica carinata HOM05D005021 ORTHO05D006824 2.0e-33 149.4 89 75.3
SGA_v2.0_scaffold88G27325 Striga asiatica HOM05D005021 ORTHO05D006824 1.4e-31 143.3 114 61.4
SEGI_41047 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 1.6e-30 139.8 164 43.3
Actinidia33676 Actinidia chinensis HOM05D005021 ORTHO05D006824 3.9e-29 135.2 94 75.5
MBI13_g07384_MAGBIO Magnolia biondii HOM05D005021 ORTHO05D018021 8.6e-29 134.0 113 65.5
QL05p044008 Quercus lobata HOM05D005021 ORTHO05D006824 1.9e-28 132.9 83 79.5
SHI31497 Sapria himalayana HOM05D005021 ORTHO05D006824 2.8e-27 129.0 112 58.0
Lsat_1_v5_gn_6_73941 Lactuca sativa HOM05D005021 ORTHO05D020826 3.6e-27 128.6 153 55.6
GSVIVG01004787001 Vitis vinifera HOM05D000908 ORTHO05D000789 3.6e-27 128.6 83 71.1
Oeu048766.1 Olea europaea HOM05D001727 ORTHO05D001758 6.8e-26 124.4 89 70.8
Lsat_1_v5_gn_3_96441 Lactuca sativa HOM05D005021 ORTHO05D020826 3.7e-24 118.6 239 37.7
SHI31495 Sapria himalayana HOM05D005021 ORTHO05D006824 4.6e-22 111.7 121 48.8
Zm00001eb290420 Zea mays HOM05D005021 ORTHO05D006824 1.7e-21 109.8 98 51.0
SGA_v2.0_scaffold181G39736 Striga asiatica HOM05D003210 ORTHO05D000001 1.6e-19 103.2 177 39.5
HPP92_017168 Vanilla planifolia HOM05D005021 ORTHO05D006824 2.4e-18 99.4 96 59.4
Zm00001eb404970 Zea mays HOM05D005021 ORTHO05D006824 2.4e-18 99.4 109 50.5
Potri.015G123001 Populus trichocarpa HOM05D005021 ORTHO05D006824 2.6e-17 95.9 53 88.7
Psat5g003360 Pisum sativum HOM05D005021 ORTHO05D006824 6.0e-14 84.7 89 48.3
Oeu008861.1 Olea europaea HOM05D005021 ORTHO05D006824 3.9e-13 82.0 52 76.9
SEGI_05203 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 1.9e-12 79.7 43 93.0
Lsat_1_v5_gn_8_50200 Lactuca sativa HOM05D003846 ORTHO05D004726 9.6e-12 77.4 41 92.7
Lsat_1_v5_gn_2_58240 Lactuca sativa HOM05D003297 ORTHO05D020826 2.8e-11 75.9 42 90.5
Psat0s659g0040 Pisum sativum HOM05D005021 ORTHO05D023083 5.8e-09 68.2 137 32.1
Lsat_1_v5_gn_4_123441 Lactuca sativa HOM05D003846 ORTHO05D004726 2.9e-08 65.9 44 75.0
Lsat_1_v5_gn_5_125381 Lactuca sativa HOM05D003846 ORTHO05D020826 2.9e-08 65.9 44 75.0
Lsat_1_v5_gn_5_18841 Lactuca sativa HOM05D003846 ORTHO05D020826 2.9e-08 65.9 44 75.0
Lsat_1_v5_gn_5_43841 Lactuca sativa HOM05D003846 ORTHO05D020826 2.9e-08 65.9 44 75.0
Lsat_1_v5_gn_7_114520 Lactuca sativa HOM05D003846 ORTHO05D004726 2.9e-08 65.9 44 75.0
Medtr3g014450 Medicago truncatula HOM05D005021 ORTHO05D006824 1.9e-07 63.2 54 55.6
Lsat_1_v5_gn_4_70420 Lactuca sativa HOM05D003297 ORTHO05D020826 4.2e-07 62.0 43 72.1
Psat1g136920 Pisum sativum HOM05D005021 ORTHO05D023083 4.2e-07 62.0 56 50.0
Psat2g014320 Pisum sativum HOM05D005021 ORTHO05D023083 4.2e-07 62.0 56 50.0


User provided reference genes

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