Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0007721g0020 Nicotiana tabacum HOM05D003325 ORTHO05D003852 2.7e-310 1067.8 516 100.0
Nitab4.5_0012330g0020 Nicotiana tabacum HOM05D003325 ORTHO05D003852 3.0e-205 718.8 416 86.5
Peaxi162Scf00130g00520 Petunia axillaris HOM05D003325 ORTHO05D003852 1.6e-201 706.4 404 85.4
CAN.G676.19 Capsicum annuum HOM05D003325 ORTHO05D003852 4.5e-201 704.9 415 81.9
Sopen04g008200 Solanum pennellii HOM05D003325 ORTHO05D003852 9.5e-199 697.2 416 82.5
Solyc04g016130.3 Solanum lycopersicum HOM05D003325 ORTHO05D003852 2.3e-197 692.6 416 82.2
Nitab4.5_0000636g0090 Nicotiana tabacum HOM05D003325 ORTHO05D003852 5.4e-162 575.1 296 93.6
PGSC0003DMG400023730 Solanum tuberosum HOM05D003325 ORTHO05D003852 7.6e-156 554.7 416 65.9
Sopen04g008210 Solanum pennellii HOM05D003325 ORTHO05D003852 3.5e-153 545.8 416 67.1
Sopen10g030630 Solanum pennellii HOM05D003325 ORTHO05D003852 1.0e-152 544.3 416 66.3
Solyc10g080020.3 Solanum lycopersicum HOM05D003325 ORTHO05D003852 8.7e-152 541.2 416 65.9
Solyc04g016160.4 Solanum lycopersicum HOM05D003325 ORTHO05D003852 1.6e-150 537.0 416 66.6
PGSC0003DMG400038085 Solanum tuberosum HOM05D003325 ORTHO05D003852 4.5e-148 528.9 417 65.2
PGSC0003DMG400027287 Solanum tuberosum HOM05D003325 ORTHO05D003852 2.1e-145 520.0 423 64.3
Oeu061142.1 Olea europaea HOM05D003325 ORTHO05D003852 4.5e-124 449.1 418 54.8
Cc01_g02380 Coffea canephora HOM05D003325 ORTHO05D003852 3.2e-122 443.0 419 52.5
MSTRG.11269 Avicennia marina HOM05D003325 ORTHO05D003852 3.0e-120 436.4 415 52.5
ECA247G1358 Erigeron canadensis HOM05D003325 ORTHO05D003852 1.1e-119 434.5 421 50.8
HanXRQChr13g0407901 Helianthus annuus HOM05D003325 ORTHO05D003852 3.7e-118 429.5 417 52.5
Migut.I00547 Erythranthe guttata HOM05D003325 ORTHO05D003852 3.5e-116 422.9 405 53.1
CSS0012678 Camellia sinensis var. sinensis HOM05D003325 ORTHO05D003852 5.2e-112 409.1 426 50.5
Lsat_1_v5_gn_1_33020 Lactuca sativa HOM05D003325 ORTHO05D003852 8.8e-112 408.3 411 48.9
Oeu061143.2 Olea europaea HOM05D003325 ORTHO05D003852 2.0e-111 407.1 418 53.1
GSVIVG01008557001 Vitis vinifera HOM05D003325 ORTHO05D003852 2.2e-110 403.7 429 50.1
vmacro19124 Vaccinium macrocarpon HOM05D003325 ORTHO05D003852 1.1e-109 401.4 425 48.5
Atru.chr6.1822 Acer truncatum HOM05D003325 ORTHO05D003852 3.2e-106 389.8 423 50.1
SGA_v2.0_scaffold383G50423 Striga asiatica HOM05D003325 ORTHO05D003852 4.2e-106 389.4 436 47.9
Hma1.2p1_0014F.1_g009260 Hydrangea macrophylla HOM05D003325 ORTHO05D003852 5.5e-106 389.0 421 50.8
Rhsim08G0191500 Rhododendron simsii HOM05D003325 ORTHO05D003852 2.7e-105 386.7 422 46.9
TWI14G0714 Tripterygium wilfordii HOM05D003325 ORTHO05D003852 2.0e-103 380.6 406 48.5
Actinidia25563 Actinidia chinensis HOM05D003325 ORTHO05D003852 2.6e-103 380.2 420 47.6
Cpa.g.sc13.92 Carica papaya HOM05D003325 ORTHO05D003852 7.5e-103 378.6 417 49.4
MD14G1155200 Malus domestica HOM05D003325 ORTHO05D003852 2.2e-102 377.1 424 46.5
CiPaw.11G005500 Carya illinoinensis HOM05D003325 ORTHO05D003852 3.7e-102 376.3 430 46.3
TAR622G0641 Trochodendron aralioides HOM05D003325 ORTHO05D003852 4.5e-100 369.4 439 46.7
Thecc.03G131500 Theobroma cacao HOM05D003325 ORTHO05D003852 7.7e-100 368.6 423 46.8
Cfa018776 Carpinus fangiana HOM05D003325 ORTHO05D003852 2.2e-99 367.1 421 47.3
Potri.015G098700 Populus trichocarpa HOM05D003325 ORTHO05D003852 1.1e-98 364.8 419 45.3
Prupe.5G149200 Prunus persica HOM05D003325 ORTHO05D003852 2.5e-98 363.6 430 44.9
SalBow5G0035 Salvia bowleyana HOM05D003325 ORTHO05D003852 3.2e-98 363.2 413 46.2
Haze_07162 Corylus avellana HOM05D003325 ORTHO05D003852 1.8e-96 357.5 430 45.8
Gohir.A03G053200 Gossypium hirsutum HOM05D003325 ORTHO05D003852 3.0e-96 356.7 416 47.1
Duzib205G1086 Durio zibethinus HOM05D003325 ORTHO05D003852 5.2e-96 355.9 424 46.0
Gohir.D03G113900 Gossypium hirsutum HOM05D003325 ORTHO05D003852 6.8e-96 355.5 413 47.5
THA.LOC104798940 Tarenaya hassleriana HOM05D003325 ORTHO05D003852 6.8e-96 355.5 420 45.7
Eucgr.B00095 Eucalyptus grandis HOM05D003325 ORTHO05D003852 8.8e-96 355.1 417 46.3
Gorai.003G120100 Gossypium raimondii HOM05D003325 ORTHO05D003852 3.4e-95 353.2 413 47.2
Duzib068G1443 Durio zibethinus HOM05D003325 ORTHO05D003852 4.4e-95 352.8 415 45.1
Sabra12G0073800 Salix brachista HOM05D003325 ORTHO05D003852 9.8e-95 351.7 422 46.0
Manes.06G120800 Manihot esculenta HOM05D003325 ORTHO05D003852 3.7e-94 349.7 402 48.5
Potri.012G100500 Populus trichocarpa HOM05D003325 ORTHO05D003852 4.8e-94 349.4 423 46.3
COL.COLO4_07120 Corchorus olitorius HOM05D003325 ORTHO05D003852 1.1e-93 348.2 408 46.3
Lalb_Chr08g0237261 Lupinus albus HOM05D003325 ORTHO05D003852 2.7e-92 343.6 414 45.4
QL10p002570 Quercus lobata HOM05D003325 ORTHO05D003852 3.5e-92 343.2 426 45.3
CANSAT80G0326 Cannabis sativa HOM05D003325 ORTHO05D003852 1.1e-90 338.2 424 43.9
Glyma.04G196900 Glycine max HOM05D003325 ORTHO05D003852 4.2e-90 336.3 405 44.2
CANSAT80G2651 Cannabis sativa HOM05D003325 ORTHO05D003852 9.5e-90 335.1 427 43.8
Lj1g0000526 Lotus japonicus HOM05D003325 ORTHO05D003852 1.2e-89 334.7 414 44.2
RcHm_v2.0_Chr7g0189831 Rosa chinensis HOM05D003325 ORTHO05D003852 3.6e-89 333.2 428 44.2
Phvul.009G165200 Phaseolus vulgaris HOM05D003325 ORTHO05D003852 1.0e-88 331.6 408 45.1
Potri.004G005700 Populus trichocarpa HOM05D003325 ORTHO05D003852 1.8e-88 330.9 425 43.5
Glyma.06G168700 Glycine max HOM05D003325 ORTHO05D003852 2.3e-88 330.5 406 44.6
Psat5g052120 Pisum sativum HOM05D003325 ORTHO05D003852 2.3e-88 330.5 415 44.1
PGR083G0510 Punica granatum HOM05D003325 ORTHO05D003852 1.2e-87 328.2 421 43.2
Medtr3g099090 Medicago truncatula HOM05D003325 ORTHO05D003852 1.5e-87 327.8 414 43.5
Ciclev10031319m.g Citrus clementina HOM05D003325 ORTHO05D003852 4.4e-87 326.2 379 47.8
DCAR_016380 Daucus carota HOM05D003325 ORTHO05D003852 4.4e-87 326.2 421 45.1
Ca_16056_v3 Cicer arietinum L. HOM05D003325 ORTHO05D003852 9.8e-87 325.1 406 44.3
Potri.011G010200 Populus trichocarpa HOM05D003325 ORTHO05D003852 2.8e-86 323.6 423 43.3
HanXRQChr13g0408781 Helianthus annuus HOM05D003325 ORTHO05D003852 2.4e-85 320.5 420 44.0
Potri.011G010100 Populus trichocarpa HOM05D003325 ORTHO05D003852 2.4e-85 320.5 424 43.4
QL10p002524 Quercus lobata HOM05D003325 ORTHO05D003852 1.2e-84 318.2 441 41.7
FAN13G2783 Fragaria x ananassa HOM05D003325 ORTHO05D003852 2.7e-84 317.0 438 42.2
FvH4_5g08560 Fragaria vesca HOM05D003325 ORTHO05D003852 7.8e-84 315.5 436 41.7
FAN04G0895 Fragaria x ananassa HOM05D003325 ORTHO05D003852 1.0e-83 315.1 439 42.1
FAN18G4277 Fragaria x ananassa HOM05D003325 ORTHO05D003852 5.6e-82 309.3 441 41.0
HanXRQChr13g0407851 Helianthus annuus HOM05D003325 ORTHO05D003852 1.0e-80 305.1 422 43.1
HanXRQChr02g0034321 Helianthus annuus HOM05D003325 ORTHO05D003852 3.1e-80 303.5 405 42.7
Eucgr.F00440 Eucalyptus grandis HOM05D003325 ORTHO05D003852 5.8e-79 299.3 419 41.5
Thecc.03G131600 Theobroma cacao HOM05D003325 ORTHO05D003852 9.8e-79 298.5 428 42.3
Manes.06G120900 Manihot esculenta HOM05D003325 ORTHO05D003852 1.7e-78 297.7 419 39.6
QL10p002543 Quercus lobata HOM05D003325 ORTHO05D003852 4.9e-78 296.2 422 41.0
HanXRQChr10g0317761 Helianthus annuus HOM05D003325 ORTHO05D003852 2.4e-77 293.9 412 43.0
HanXRQChr02g0034341 Helianthus annuus HOM05D003325 ORTHO05D003852 3.2e-77 293.5 409 42.3
Lj5A94T50 Lonicera japonica HOM05D003325 ORTHO05D003852 3.2e-77 293.5 245 59.2
Duzib084G0716 Durio zibethinus HOM05D003325 ORTHO05D003852 5.4e-77 292.7 425 40.9
HanXRQChr13g0408791 Helianthus annuus HOM05D003325 ORTHO05D003852 9.2e-77 292.0 415 40.2
HanXRQChr13g0407891 Helianthus annuus HOM05D003325 ORTHO05D003852 1.6e-76 291.2 412 42.5
MD06G1139200 Malus domestica HOM05D003325 ORTHO05D003852 1.6e-76 291.2 416 40.9
DCAR_021633 Daucus carota HOM05D003325 ORTHO05D003852 2.0e-76 290.8 429 41.0
DCAR_021631 Daucus carota HOM05D003325 ORTHO05D003852 3.5e-76 290.0 429 40.8
Hund10145 Selenicereus undatus HOM05D003325 ORTHO05D003852 6.0e-76 289.3 405 40.2
HanXRQChr00c0029g0571191 Helianthus annuus HOM05D003325 ORTHO05D003852 2.3e-75 287.3 410 41.2
Gohir.A03G053300 Gossypium hirsutum HOM05D003325 ORTHO05D003852 3.0e-75 287.0 422 39.3
Gohir.D03G113600 Gossypium hirsutum HOM05D003325 ORTHO05D003852 5.0e-75 286.2 422 39.1
Gorai.003G119900 Gossypium raimondii HOM05D003325 ORTHO05D003852 5.0e-75 286.2 422 39.1
DCAR_021629 Daucus carota HOM05D003325 ORTHO05D003852 6.6e-75 285.8 426 40.1
MBI11_g22691_MAGBIO Magnolia biondii HOM05D003325 ORTHO05D003852 6.6e-75 285.8 445 39.8
arahy.Tifrunner.gnm1.ann1.C4UAPE Arachis hypogaea HOM05D003325 ORTHO05D003852 3.6e-73 280.0 412 40.8
Sc10g0010520 Simmondsia chinensis HOM05D003325 ORTHO05D003852 6.2e-73 279.3 421 39.2
Migut.N02143 Erythranthe guttata HOM05D003325 ORTHO05D003852 8.0e-73 278.9 360 43.9
Lj1g0016208 Lotus japonicus HOM05D003325 ORTHO05D003852 1.4e-72 278.1 414 40.3
Potri.015G098800 Populus trichocarpa HOM05D003325 ORTHO05D003852 1.8e-72 277.7 424 36.1
Nn4g22275 Nelumbo nucifera HOM05D003325 ORTHO05D003852 3.1e-72 276.9 313 48.9
Cpa.g.sc4.169 Carica papaya HOM05D003325 ORTHO05D003852 1.5e-71 274.6 447 38.7
AUR62029583 Chenopodium quinoa HOM05D003325 ORTHO05D003852 4.4e-71 273.1 397 39.3
Dinv23165 Davidia involucrata HOM05D003325 ORTHO05D003852 7.5e-71 272.3 279 51.3
Aa31LG1G18420 Aethionema arabicum HOM05D003325 ORTHO05D003852 4.1e-69 266.5 412 39.6
Sp2g26610 Schrenkiella parvula HOM05D003325 ORTHO05D003852 4.1e-69 266.5 425 39.1
Eucgr.L01506 Eucalyptus grandis HOM05D003325 ORTHO05D003852 2.7e-68 263.8 289 49.1
Prupe.5G149100 Prunus persica HOM05D003325 ORTHO05D003852 7.8e-68 262.3 412 36.9
Carub.0008s2425 Capsella rubella HOM05D003325 ORTHO05D003852 2.3e-67 260.8 420 39.8
A02p42850 Brassica napus HOM05D003325 ORTHO05D003852 7.3e-66 255.8 425 38.8
AL8G40600 Arabidopsis lyrata HOM05D003325 ORTHO05D003852 2.1e-65 254.2 420 39.5
Thhalv10004048m.g Eutrema salsugineum HOM05D003325 ORTHO05D003852 6.2e-65 252.7 420 37.1
Potri.012G100600 Populus trichocarpa HOM05D003325 ORTHO05D003852 1.4e-64 251.5 424 35.6
BcaB07g29692 Brassica carinata HOM05D003325 ORTHO05D003852 1.8e-64 251.1 425 38.6
AT5G63520 Arabidopsis thaliana HOM05D003325 ORTHO05D003852 4.0e-64 250.0 421 39.4
BcaC03g18211 Brassica carinata HOM05D003325 ORTHO05D003852 8.9e-64 248.8 425 37.9
MD06G1139600 Malus domestica HOM05D003325 ORTHO05D003852 2.0e-63 247.7 278 46.8
arahy.Tifrunner.gnm1.ann1.XMC2I2 Arachis hypogaea HOM05D003325 ORTHO05D003852 2.6e-63 247.3 381 39.1
TAR622G0196 Trochodendron aralioides HOM05D003325 ORTHO05D003852 3.4e-63 246.9 359 43.2
HanXRQChr13g0408811 Helianthus annuus HOM05D003325 ORTHO05D003852 5.8e-63 246.1 413 40.0
BolC2t12350H Brassica oleracea HOM05D003325 ORTHO05D003852 7.5e-63 245.7 425 37.6
BraA02t09207Z Brassica rapa HOM05D003325 ORTHO05D003852 7.5e-63 245.7 426 38.0
C02p62780 Brassica napus HOM05D003325 ORTHO05D003852 1.3e-62 245.0 426 37.8
CARHR277380 Cardamine hirsuta HOM05D003325 ORTHO05D003852 2.4e-61 240.7 422 37.4
HanXRQChr13g0407821 Helianthus annuus HOM05D003325 ORTHO05D003852 2.4e-61 240.7 275 49.1
Ciclev10033680m.g Citrus clementina HOM05D003325 ORTHO05D003852 3.2e-61 240.4 428 36.9
TWI39G0380 Tripterygium wilfordii HOM05D003325 ORTHO05D003852 4.1e-61 240.0 432 34.5
THA.LOC104798939 Tarenaya hassleriana HOM05D003325 ORTHO05D003852 2.1e-60 237.7 393 36.9
ATR0561G074 Amborella trichopoda HOM05D003325 ORTHO05D003852 1.1e-58 231.9 432 35.6
AUR62038854 Chenopodium quinoa HOM05D003325 ORTHO05D003852 1.9e-58 231.1 389 35.0
HanXRQChr04g0099631 Helianthus annuus HOM05D003325 ORTHO05D003852 9.5e-58 228.8 396 38.9
COL.COLO4_07119 Corchorus olitorius HOM05D003325 ORTHO05D003852 1.2e-57 228.4 478 32.6
Migut.N02169 Erythranthe guttata HOM05D003325 ORTHO05D003852 3.4e-55 220.3 294 41.8
VMungo1309G3084 Vigna mungo HOM05D003325 ORTHO05D003852 4.4e-55 219.9 233 48.5
Sabra12G0073900 Salix brachista HOM05D003325 ORTHO05D003852 9.9e-55 218.8 424 33.0
Thhalv10004000m.g Eutrema salsugineum HOM05D003325 ORTHO05D003852 1.5e-50 204.9 401 34.4
HanXRQChr13g0408771 Helianthus annuus HOM05D003325 ORTHO05D003852 1.5e-50 204.9 332 39.8
Sc10g0010530 Simmondsia chinensis HOM05D003325 ORTHO05D003852 5.6e-50 203.0 279 41.6
A06p30150 Brassica napus HOM05D003325 ORTHO05D003852 1.1e-48 198.7 391 34.0
BraA06t25966Z Brassica rapa HOM05D003325 ORTHO05D003852 1.1e-48 198.7 391 34.0
BcaB02g09754 Brassica carinata HOM05D003325 ORTHO05D003852 6.9e-48 196.1 390 33.6
BcaC01g06930 Brassica carinata HOM05D003325 ORTHO05D003852 6.9e-48 196.1 390 33.8
BolC3t18546H Brassica oleracea HOM05D003325 ORTHO05D003852 6.9e-48 196.1 390 34.1
C03p62920 Brassica napus HOM05D003325 ORTHO05D003852 9.0e-48 195.7 390 33.8
CDE06G2031 Ceratophyllum demersum HOM05D003325 ORTHO05D003852 6.4e-46 189.5 374 34.8
FvH4_5g08570 Fragaria vesca HOM05D003325 ORTHO05D003852 4.2e-45 186.8 423 34.0
Eucgr.B00098 Eucalyptus grandis HOM05D003325 ORTHO05D003852 5.1e-43 179.9 182 49.5
FAN04G2439 Fragaria x ananassa HOM05D003325 ORTHO05D003852 1.5e-42 178.3 430 33.5
FAN18G2108 Fragaria x ananassa HOM05D003325 ORTHO05D003852 1.4e-40 171.8 447 31.5
Sed0021268 Sechium edule HOM05D003325 ORTHO05D003852 2.6e-39 167.5 428 31.5
HanXRQChr01g0000031 Helianthus annuus HOM05D003325 ORTHO05D003852 2.9e-38 164.1 371 33.2
Aqoxy5G03311 Aquilegia oxysepala HOM05D003325 ORTHO05D003852 8.4e-38 162.5 243 40.3
ATR0561G042 Amborella trichopoda HOM05D003325 ORTHO05D003852 2.4e-37 161.0 293 37.9
HanXRQChr04g0099641 Helianthus annuus HOM05D003325 ORTHO05D003852 2.7e-36 157.5 276 37.7
MD14G1155100 Malus domestica HOM05D003325 ORTHO05D003852 7.9e-36 156.0 297 36.4
HanXRQChr13g0408751 Helianthus annuus HOM05D003325 ORTHO05D003852 1.3e-35 155.2 407 30.2
Solyc04g016150.2 Solanum lycopersicum HOM05D003325 ORTHO05D003852 3.0e-35 154.1 115 62.6
Migut.K00759 Erythranthe guttata HOM05D003325 ORTHO05D003852 3.3e-34 150.6 222 39.6
Migut.O00357 Erythranthe guttata HOM05D003325 ORTHO05D003852 4.3e-34 150.2 222 39.6
HanXRQChr02g0034301 Helianthus annuus HOM05D003325 ORTHO05D003852 4.5e-31 140.2 159 49.1
MD06G1139800 Malus domestica HOM05D003325 ORTHO05D003852 1.3e-30 138.7 148 48.6
TPR.G27817 Trifolium pratense HOM05D003325 ORTHO05D003852 2.2e-30 137.9 180 42.8
Ah.11g045510 Amaranthus hybridus HOM05D003325 ORTHO05D003852 3.5e-28 130.6 157 42.0
VMungo1309G1507 Vigna mungo HOM05D003325 ORTHO05D003852 3.0e-27 127.5 173 39.9
HanXRQChr13g0403611 Helianthus annuus HOM05D003325 ORTHO05D003852 8.7e-19 99.4 113 45.1
TPR.G496 Trifolium pratense HOM05D003325 ORTHO05D003852 3.3e-18 97.4 122 50.8
HanXRQChr02g0034311 Helianthus annuus HOM05D003325 ORTHO05D003852 4.3e-18 97.1 123 41.5
EL10Ac5g11389 Beta vulgaris HOM05D003325 ORTHO05D003852 5.7e-18 96.7 116 45.7
Sabra15G0119600 Salix brachista HOM05D003325 ORTHO05D003852 5.7e-18 96.7 129 39.5
SEGI_07717 Sequoiadendron giganteum HOM05D003325 ORTHO05D003852 1.1e-16 92.4 145 36.6
QL03p041468 Quercus lobata HOM05D003325 ORTHO05D003852 4.1e-16 90.5 129 39.5
HanXRQChr04g0099661 Helianthus annuus HOM05D003325 ORTHO05D003852 1.2e-15 89.0 120 39.2
QL03p041488 Quercus lobata HOM05D003325 ORTHO05D003852 1.3e-14 85.5 134 35.8
MD07G1107900 Malus domestica HOM05D003543 ORTHO05D004112 6.5e-14 83.2 96 46.9
ATR0561G214 Amborella trichopoda HOM05D003325 ORTHO05D003852 4.2e-13 80.5 145 35.9
Sabra15G0119700 Salix brachista HOM05D003325 ORTHO05D003852 7.9e-12 76.3 127 34.6
Lj5A94T49 Lonicera japonica HOM05D003325 ORTHO05D003852 2.3e-11 74.7 73 46.6
SEGI_12810 Sequoiadendron giganteum HOM05D003325 ORTHO05D003852 2.5e-10 71.2 124 33.1
MD06G1139000 Malus domestica HOM05D003325 ORTHO05D003852 3.1e-08 64.3 125 33.6
FAN08G2527 Fragaria x ananassa HOM05D003325 ORTHO05D003852 3.4e-07 60.8 74 40.5
SEGI_40826 Sequoiadendron giganteum HOM05D003325 ORTHO05D003852 1.0e-06 59.3 59 49.2
Migut.I00368 Erythranthe guttata HOM05D003325 ORTHO05D003852 1.7e-06 58.5 72 40.3


User provided reference genes

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