Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0007711g0010 Nicotiana tabacum HOM05D006404 ORTHO05D008170 0.0e+00 1945.6 946 100.0
Nitab4.5_0006123g0010 Nicotiana tabacum HOM05D006404 ORTHO05D008170 0.0e+00 1698.3 910 91.2
CAN.G494.3 Capsicum annuum HOM05D006404 ORTHO05D008170 0.0e+00 1593.9 948 82.6
Solyc11g065340.2 Solanum lycopersicum HOM05D006404 ORTHO05D008170 0.0e+00 1572.8 939 82.6
Peaxi162Scf00004g03311 Petunia axillaris HOM05D006404 ORTHO05D008170 0.0e+00 1541.2 944 80.6
Sopen11g025080 Solanum pennellii HOM05D006404 ORTHO05D008170 0.0e+00 1521.9 937 80.6
PGSC0003DMG400029994 Solanum tuberosum HOM05D006404 ORTHO05D008170 0.0e+00 1476.1 880 83.3
Cc01_g05020 Coffea canephora HOM05D006404 ORTHO05D008170 0.0e+00 1233.4 940 62.6
TAR633G0603 Trochodendron aralioides HOM05D006404 ORTHO05D008170 0.0e+00 1190.3 959 61.4
CSS0037938 Camellia sinensis var. sinensis HOM05D006404 ORTHO05D008170 0.0e+00 1180.6 957 60.7
GSVIVG01031534001 Vitis vinifera HOM05D006404 ORTHO05D008170 0.0e+00 1171.4 938 61.5
Potri.001G255700 Populus trichocarpa HOM05D006404 ORTHO05D008170 0.0e+00 1170.2 950 59.7
QL01p004100 Quercus lobata HOM05D006404 ORTHO05D008170 0.0e+00 1169.5 954 61.2
MSTRG.12459 Avicennia marina HOM05D006404 ORTHO05D008170 0.0e+00 1162.5 943 59.7
Cfa009810 Carpinus fangiana HOM05D006404 ORTHO05D008170 0.0e+00 1158.7 947 60.6
Ciclev10014162m.g Citrus clementina HOM05D006404 ORTHO05D008170 0.0e+00 1158.7 949 59.9
Potri.009G051100 Populus trichocarpa HOM05D006404 ORTHO05D008170 0.0e+00 1158.7 949 59.9
TWI32G0006 Tripterygium wilfordii HOM05D006404 ORTHO05D008170 0.0e+00 1154.8 944 60.4
Oeu061307.1 Olea europaea HOM05D006404 ORTHO05D008170 0.0e+00 1152.5 850 65.1
Rhsim13G0217700 Rhododendron simsii HOM05D006404 ORTHO05D008170 0.0e+00 1151.3 989 58.6
Thecc.09G239000 Theobroma cacao HOM05D006404 ORTHO05D008170 0.0e+00 1150.2 961 59.7
Manes.06G162300 Manihot esculenta HOM05D006404 ORTHO05D008170 0.0e+00 1134.8 956 59.1
RcHm_v2.0_Chr5g0053011 Rosa chinensis HOM05D006404 ORTHO05D008170 0.0e+00 1131.3 947 59.5
FAN16G0405 Fragaria x ananassa HOM05D006404 ORTHO05D008170 0.0e+00 1128.2 947 58.8
FvH4_3g28450 Fragaria vesca HOM05D006404 ORTHO05D008170 0.0e+00 1122.1 951 57.9
FAN11G2181 Fragaria x ananassa HOM05D006404 ORTHO05D008170 0.0e+00 1121.3 946 58.2
Actinidia06923 Actinidia chinensis HOM05D006404 ORTHO05D008170 0.0e+00 1118.2 829 65.0
Eucgr.B03709 Eucalyptus grandis HOM05D006404 ORTHO05D008170 0.0e+00 1113.6 926 58.5
MD03G1172000 Malus domestica HOM05D006404 ORTHO05D008170 0.0e+00 1113.2 958 58.1
Nn7g36358 Nelumbo nucifera HOM05D006404 ORTHO05D008170 0.0e+00 1111.7 950 58.1
Gorai.006G126600 Gossypium raimondii HOM05D006404 ORTHO05D008170 0.0e+00 1110.5 950 59.3
Gohir.D09G109000 Gossypium hirsutum HOM05D006404 ORTHO05D008170 0.0e+00 1109.7 950 59.2
FAN21G1559 Fragaria x ananassa HOM05D006404 ORTHO05D008170 0.0e+00 1107.8 969 57.1
Gorai.009G074000 Gossypium raimondii HOM05D006404 ORTHO05D008170 0.0e+00 1105.5 944 58.5
COL.COLO4_36457 Corchorus olitorius HOM05D006404 ORTHO05D008170 0.0e+00 1104.0 832 64.2
Nn2g15163 Nelumbo nucifera HOM05D006404 ORTHO05D008170 0.0e+00 1100.1 918 58.3
Sabra09G0037200 Salix brachista HOM05D006404 ORTHO05D008170 0.0e+00 1086.6 881 59.9
Migut.N02343 Erythranthe guttata HOM05D006404 ORTHO05D008170 6.5e-312 1073.9 941 57.6
Sabra16G0156500 Salix brachista HOM05D006404 ORTHO05D008170 9.7e-311 1070.1 919 58.1
MELO3C015171.2 Cucumis melo HOM05D006404 ORTHO05D008170 1.4e-309 1066.2 938 55.2
CsaV3_1G042990 Cucumis sativus L. HOM05D006404 ORTHO05D008170 5.4e-309 1064.3 940 55.5
Haze_23174 Corylus avellana HOM05D006404 ORTHO05D008170 1.0e-307 1060.1 939 57.0
PGR102G1713 Punica granatum HOM05D006404 ORTHO05D008170 3.0e-307 1058.5 946 56.9
Prupe.4G254900 Prunus persica HOM05D006404 ORTHO05D008170 1.1e-304 1050.0 821 60.9
Duzib150G0746 Durio zibethinus HOM05D006404 ORTHO05D008170 1.4e-304 1049.7 969 56.3
Glyma.12G020900 Glycine max HOM05D006404 ORTHO05D008170 2.0e-303 1045.8 918 55.8
Actinidia16347 Actinidia chinensis HOM05D006404 ORTHO05D008170 4.4e-303 1044.6 791 62.5
ClCG03G013070 Citrullus lanatus HOM05D006404 ORTHO05D008170 1.6e-300 1036.2 941 54.7
Hund07470 Selenicereus undatus HOM05D006404 ORTHO05D008170 3.0e-299 1031.9 902 56.7
VMungo1127G0106 Vigna mungo HOM05D006404 ORTHO05D008170 1.1e-298 1030.0 916 55.3
Glyma.01G227500 Glycine max HOM05D006404 ORTHO05D008170 1.1e-296 1023.5 949 54.3
VMungo1215G1207 Vigna mungo HOM05D006404 ORTHO05D008170 1.1e-296 1023.5 921 54.9
Lj3g0019929 Lotus japonicus HOM05D006404 ORTHO05D008170 6.9e-296 1020.8 954 54.6
Medtr4g076810 Medicago truncatula HOM05D006404 ORTHO05D008170 7.6e-295 1017.3 950 54.6
Aqoxy2G00213 Aquilegia oxysepala HOM05D006404 ORTHO05D008170 3.8e-294 1015.0 959 53.3
Psat7g172680 Pisum sativum HOM05D006404 ORTHO05D008170 1.9e-293 1012.7 959 53.9
vmacro04128 Vaccinium macrocarpon HOM05D006404 ORTHO05D008170 2.3e-291 1005.7 904 57.4
CANSAT54G0859 Cannabis sativa HOM05D006404 ORTHO05D008170 5.1e-291 1004.6 884 55.5
DCAR_029968 Daucus carota HOM05D006404 ORTHO05D008170 3.3e-290 1001.9 911 54.3
TPR.G13759 Trifolium pratense HOM05D006404 ORTHO05D008170 9.6e-290 1000.3 948 54.1
THA.LOC104811179 Tarenaya hassleriana HOM05D006404 ORTHO05D008170 7.6e-287 990.7 923 53.4
SGA_v2.0_scaffold3G01478 Striga asiatica HOM05D006404 ORTHO05D008170 9.9e-287 990.3 959 52.1
Sed0002434 Sechium edule HOM05D006404 ORTHO05D008170 6.4e-286 987.6 945 53.1
Atru.chr3.2649 Acer truncatum HOM05D006404 ORTHO05D008170 2.4e-285 985.7 714 65.3
arahy.Tifrunner.gnm1.ann1.E0EAPG Arachis hypogaea HOM05D006404 ORTHO05D008170 2.4e-285 985.7 951 53.7
Lalb_Chr03g0024521 Lupinus albus HOM05D006404 ORTHO05D008170 7.1e-285 984.2 951 52.7
arahy.Tifrunner.gnm1.ann1.BK260Y Arachis hypogaea HOM05D006404 ORTHO05D008170 1.6e-284 983.0 942 53.7
AUR62039864 Chenopodium quinoa HOM05D006404 ORTHO05D008170 1.3e-283 979.9 905 54.9
Zm00001eb332810 Zea mays HOM05D006404 ORTHO05D008170 3.0e-283 978.8 922 52.0
AUR62000151 Chenopodium quinoa HOM05D006404 ORTHO05D008170 1.5e-282 976.5 910 54.1
Sc16g0011280 Simmondsia chinensis HOM05D006404 ORTHO05D008170 2.8e-281 972.2 907 54.1
Lj2A624G32 Lonicera japonica HOM05D006404 ORTHO05D008170 1.8e-280 969.5 913 54.7
HanXRQChr13g0401241 Helianthus annuus HOM05D006404 ORTHO05D008170 3.1e-280 968.8 915 53.6
Ca_26059_v3 Cicer arietinum L. HOM05D006404 ORTHO05D008170 2.5e-277 959.1 821 57.0
Ca_30127_v3 Cicer arietinum L. HOM05D006404 ORTHO05D008170 2.5e-277 959.1 821 57.0
ECA233G0536 Erigeron canadensis HOM05D006404 ORTHO05D008170 3.2e-269 932.2 818 57.2
Lsat_1_v5_gn_6_25840 Lactuca sativa HOM05D006404 ORTHO05D008170 3.3e-266 922.2 910 52.3
MBI19_g45588_MAGBIO Magnolia biondii HOM05D006404 ORTHO05D008170 1.2e-263 913.7 821 56.2
CiPaw.13G154900 Carya illinoinensis HOM05D006404 ORTHO05D008170 1.7e-262 909.8 750 59.5
Gohir.A05G070000 Gossypium hirsutum HOM05D006404 ORTHO05D008170 1.2e-255 887.1 747 58.5
Glyma.11G094500 Glycine max HOM05D006404 ORTHO05D008170 1.7e-254 883.2 722 58.7
Ah.06g193910 Amaranthus hybridus HOM05D006404 ORTHO05D008170 1.9e-253 879.8 898 50.6
ATR0307G124 Amborella trichopoda HOM05D006404 ORTHO05D008170 2.5e-253 879.4 948 48.4
SEGI_17812 Sequoiadendron giganteum HOM05D006404 ORTHO05D008170 1.1e-248 864.0 929 49.3
EL10Ac4g10212 Beta vulgaris HOM05D006404 ORTHO05D008170 1.5e-245 853.6 898 49.7
Duzib168G1842 Durio zibethinus HOM05D006404 ORTHO05D008170 5.7e-242 841.6 636 63.1
Gohir.A09G112300 Gossypium hirsutum HOM05D006404 ORTHO05D008170 1.6e-228 797.0 628 61.9
Cpa.g.sc84.27 Carica papaya HOM05D006404 ORTHO05D008170 1.0e-227 794.3 817 50.8
Manes.14G004336 Manihot esculenta HOM05D006404 ORTHO05D008170 1.9e-205 720.3 950 44.8
CSS0019486 Camellia sinensis var. sinensis HOM05D006404 ORTHO05D008170 3.9e-198 696.0 489 66.5
Phvul.002G034601 Phaseolus vulgaris HOM05D006404 ORTHO05D008170 2.1e-191 673.7 651 51.5
Mapoly0128s0014 Marchantia polymorpha HOM05D006404 ORTHO05D008170 1.1e-187 661.4 979 38.4
Os01g0275900 Oryza sativa ssp. japonica HOM05D006404 ORTHO05D008170 2.3e-182 643.7 583 53.3
Gohir.D05G073000 Gossypium hirsutum HOM05D006404 ORTHO05D008170 5.3e-155 552.7 433 61.0
Phvul.011G076700 Phaseolus vulgaris HOM05D006404 ORTHO05D008170 3.9e-150 536.6 540 50.4
unitig_27.g25000 Utricularia gibba HOM05D006404 ORTHO05D008170 1.9e-149 534.3 503 54.3
HPP92_028181 Vanilla planifolia HOM05D006404 ORTHO05D008170 2.0e-141 507.7 499 49.5
Gohir.D05G072932 Gossypium hirsutum HOM05D006404 ORTHO05D008170 9.1e-139 498.8 479 54.3
CBR_g12234 Chara braunii HOM05D006404 ORTHO05D008170 2.2e-124 451.1 1025 32.6
Glyma.11G015367 Glycine max HOM05D006404 ORTHO05D008170 2.8e-116 424.1 381 54.1
FAN25G0856 Fragaria x ananassa HOM05D006404 ORTHO05D008170 1.0e-110 405.6 408 52.7
PGSC0003DMG400035426 Solanum tuberosum HOM05D006404 ORTHO05D008170 2.0e-98 364.8 207 85.0
HPP92_028182 Vanilla planifolia HOM05D006404 ORTHO05D008170 3.0e-97 360.9 308 54.9
Gohir.A09G112350 Gossypium hirsutum HOM05D006404 ORTHO05D008170 1.5e-72 278.9 301 52.2
Os01g0275950 Oryza sativa ssp. japonica HOM05D006404 ORTHO05D008170 1.9e-59 235.3 286 44.1
Duzib168G1560 Durio zibethinus HOM05D006404 ORTHO05D008170 7.1e-59 233.4 254 53.1
TAR633G2510 Trochodendron aralioides HOM05D006404 ORTHO05D008170 6.0e-58 230.3 296 46.3
unitig_27.g24999 Utricularia gibba HOM05D006404 ORTHO05D008170 4.8e-55 220.7 337 38.6
PGSC0003DMG400025695 Solanum tuberosum HOM05D006404 ORTHO05D008170 8.7e-49 199.9 115 82.6
MBI19_g48146_MAGBIO Magnolia biondii HOM05D006404 ORTHO05D008170 1.4e-46 192.6 252 44.0
Lsat_1_v5_gn_8_47480 Lactuca sativa HOM05D006404 ORTHO05D008170 5.0e-28 131.0 159 46.5
PRCOL_00003209 Prasinoderma coloniale HOM05D006404 ORTHO05D008170 1.4e-27 129.4 809 22.4
Atru.chr3.2650 Acer truncatum HOM05D006404 ORTHO05D008170 3.2e-27 128.3 104 59.6
Lsat_1_v5_gn_4_119980 Lactuca sativa HOM05D006404 ORTHO05D008170 2.7e-26 125.2 135 49.6
Lsat_1_v5_gn_5_69941 Lactuca sativa HOM05D006404 ORTHO05D008170 4.7e-26 124.4 159 44.0
HPP92_012439 Vanilla planifolia HOM05D006404 ORTHO05D008170 1.0e-20 106.7 216 31.9
MELO3C030880.2 Cucumis melo HOM05D006404 ORTHO05D008170 6.7e-17 94.0 94 50.0
Thecc.01G390500 Theobroma cacao HOM05D006404 ORTHO05D008170 2.4e-14 85.5 71 54.9
COL.COLO4_24475 Corchorus olitorius HOM05D003120 ORTHO05D003568 2.9e-12 78.6 42 83.3
MELO3C034790.2 Cucumis melo HOM05D006404 ORTHO05D008170 3.8e-12 78.2 50 64.0
Atru.chr3.2651 Acer truncatum HOM05D006404 ORTHO05D008170 6.5e-12 77.4 93 44.1
MELO3C028471.2 Cucumis melo HOM05D006404 ORTHO05D008170 6.1e-10 70.9 52 59.6
MELO3C034469.2 Cucumis melo HOM05D006404 ORTHO05D003726 3.3e-08 65.1 61 49.2


User provided reference genes

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