Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0007632g0020 Nicotiana tabacum HOM05D003980 ORTHO05D005301 1.5e-121 439.5 213 100.0
Nitab4.5_0000663g0190 Nicotiana tabacum HOM05D003980 ORTHO05D005301 5.7e-81 304.7 187 85.0
Nitab4.5_0002450g0020 Nicotiana tabacum HOM05D003980 ORTHO05D005301 5.7e-81 304.7 187 85.0
Peaxi162Scf00314g00535 Petunia axillaris HOM05D003980 ORTHO05D005301 3.8e-69 265.4 187 75.9
Solyc03g118350.4 Solanum lycopersicum HOM05D003980 ORTHO05D005301 1.4e-68 263.5 187 74.9
Sopen03g037250 Solanum pennellii HOM05D003980 ORTHO05D005301 1.4e-68 263.5 187 74.9
CAN.G843.24 Capsicum annuum HOM05D003980 ORTHO05D005301 3.2e-68 262.3 187 74.3
PGSC0003DMG401014249 Solanum tuberosum HOM05D003980 ORTHO05D005301 7.9e-67 257.7 187 73.8
Dinv13736 Davidia involucrata HOM05D003980 ORTHO05D005301 1.8e-58 229.9 187 65.8
CSS0000982 Camellia sinensis var. sinensis HOM05D003980 ORTHO05D005301 1.6e-54 216.9 187 61.5
Dinv23210 Davidia involucrata HOM05D003980 ORTHO05D005301 2.0e-54 216.5 187 62.0
TAR371G0735 Trochodendron aralioides HOM05D003980 ORTHO05D005301 9.4e-52 207.6 187 59.4
Glyma.08G008600 Glycine max HOM05D003980 ORTHO05D005301 1.6e-51 206.8 187 61.0
Actinidia25530 Actinidia chinensis HOM05D003980 ORTHO05D005301 8.0e-51 204.5 187 58.8
SalBow7G4845 Salvia bowleyana HOM05D003980 ORTHO05D005301 1.4e-50 203.8 187 60.4
CSS0048257 Camellia sinensis var. sinensis HOM05D003980 ORTHO05D005301 4.0e-50 202.2 189 56.6
Haze_07113 Corylus avellana HOM05D003980 ORTHO05D005301 2.6e-49 199.5 187 58.8
MD06G1132400 Malus domestica HOM05D003980 ORTHO05D005301 2.6e-49 199.5 186 59.7
Cfa018720 Carpinus fangiana HOM05D003980 ORTHO05D005301 3.3e-49 199.1 187 58.8
CSS0005251 Camellia sinensis var. sinensis HOM05D003980 ORTHO05D005301 4.4e-49 198.7 189 56.1
COL.COLO4_37237 Corchorus olitorius HOM05D003980 ORTHO05D005301 4.4e-49 198.7 188 59.0
MSTRG.11233 Avicennia marina HOM05D003980 ORTHO05D005301 2.2e-48 196.4 187 57.2
TWI14G0519 Tripterygium wilfordii HOM05D003980 ORTHO05D005301 3.7e-48 195.7 187 56.7
Rhsim08G0195900 Rhododendron simsii HOM05D003980 ORTHO05D005301 1.1e-47 194.1 187 58.8
Ciclev10030650m.g Citrus clementina HOM05D003980 ORTHO05D005301 1.8e-47 193.4 187 58.8
Cc04_g05920 Coffea canephora HOM05D003980 ORTHO05D005301 1.8e-47 193.4 187 57.2
RcHm_v2.0_Chr7g0188941 Rosa chinensis HOM05D003980 ORTHO05D005301 7.0e-47 191.4 188 59.6
Cpa.g.sc4.108 Carica papaya HOM05D003980 ORTHO05D005301 1.2e-46 190.7 187 55.6
MD14G1148800 Malus domestica HOM05D003980 ORTHO05D005301 1.6e-46 190.3 186 58.6
Thecc.03G138500 Theobroma cacao HOM05D003980 ORTHO05D005301 1.6e-46 190.3 188 58.0
vmacro19166 Vaccinium macrocarpon HOM05D003980 ORTHO05D005301 2.0e-46 189.9 193 57.0
Duzib205G0834 Durio zibethinus HOM05D003980 ORTHO05D005301 2.7e-46 189.5 187 56.7
Lj4g0027174 Lotus japonicus HOM05D003980 ORTHO05D005301 3.5e-46 189.1 188 55.9
Lalb_Chr12g0202411 Lupinus albus HOM05D003980 ORTHO05D005301 7.7e-46 188.0 188 56.4
Prupe.5G143400 Prunus persica HOM05D003980 ORTHO05D005301 7.7e-46 188.0 186 57.5
Gohir.A09G248100 Gossypium hirsutum HOM05D003980 ORTHO05D005301 1.0e-45 187.6 187 56.1
Gohir.D09G248900 Gossypium hirsutum HOM05D003980 ORTHO05D005301 1.0e-45 187.6 187 56.1
Gorai.006G273300 Gossypium raimondii HOM05D003980 ORTHO05D005301 1.0e-45 187.6 187 56.1
PGSC0003DMG402014249 Solanum tuberosum HOM05D003980 ORTHO05D005301 1.3e-45 187.2 116 83.6
arahy.Tifrunner.gnm1.ann1.US1BEE Arachis hypogaea HOM05D003980 ORTHO05D005301 3.8e-45 185.7 187 55.6
FAN08G3345 Fragaria x ananassa HOM05D003980 ORTHO05D005301 3.8e-45 185.7 197 56.3
arahy.Tifrunner.gnm1.ann1.JJXJ29 Arachis hypogaea HOM05D003980 ORTHO05D005301 6.5e-45 184.9 187 55.6
Duzib084G0479 Durio zibethinus HOM05D003980 ORTHO05D005301 6.5e-45 184.9 188 56.4
FAN04G0599 Fragaria x ananassa HOM05D003980 ORTHO05D005301 8.5e-45 184.5 197 56.3
Lj5A88T63 Lonicera japonica HOM05D003980 ORTHO05D005301 8.5e-45 184.5 187 57.2
Lj9A485G82 Lonicera japonica HOM05D003980 ORTHO05D005301 1.1e-44 184.1 189 55.6
VMungo0251G0815 Vigna mungo HOM05D003980 ORTHO05D005301 1.1e-44 184.1 187 55.1
FvH4_5g09220 Fragaria vesca HOM05D003980 ORTHO05D005301 1.5e-44 183.7 197 56.3
FAN18G3345 Fragaria x ananassa HOM05D003980 ORTHO05D005301 1.5e-44 183.7 197 56.3
Eucgr.B00073 Eucalyptus grandis HOM05D003980 ORTHO05D005301 1.9e-44 183.3 186 56.5
Aqoxy5G03175 Aquilegia oxysepala HOM05D003980 ORTHO05D005301 2.5e-44 183.0 187 54.5
FAN13G1995 Fragaria x ananassa HOM05D003980 ORTHO05D005301 2.5e-44 183.0 197 55.8
Atru.chr6.1901 Acer truncatum HOM05D003980 ORTHO05D005301 3.2e-44 182.6 188 56.4
Nn4g22168 Nelumbo nucifera HOM05D003980 ORTHO05D005301 3.2e-44 182.6 187 53.5
Potri.015G105000 Populus trichocarpa HOM05D003980 ORTHO05D005301 5.5e-44 181.8 188 56.4
EL10Ac5g11306 Beta vulgaris HOM05D003980 ORTHO05D005301 9.4e-44 181.0 189 56.1
Manes.06G125700 Manihot esculenta HOM05D003980 ORTHO05D005301 1.2e-43 180.6 189 55.6
Ca_17584_v3 Cicer arietinum L. HOM05D003980 ORTHO05D005301 1.6e-43 180.3 187 55.1
Lalb_Chr13g0297021 Lupinus albus HOM05D003980 ORTHO05D005301 2.1e-43 179.9 188 54.8
Medtr8g100000 Medicago truncatula HOM05D003980 ORTHO05D005301 2.7e-43 179.5 187 55.1
Potri.012G105800 Populus trichocarpa HOM05D003980 ORTHO05D005301 2.7e-43 179.5 189 57.1
PGR083G0225 Punica granatum HOM05D003980 ORTHO05D005301 3.6e-43 179.1 187 57.2
MBI19_g26308_MAGBIO Magnolia biondii HOM05D003980 ORTHO05D005301 6.1e-43 178.3 187 52.9
Hund10056 Selenicereus undatus HOM05D003980 ORTHO05D005301 6.1e-43 178.3 189 54.5
TWI39G0366 Tripterygium wilfordii HOM05D003980 ORTHO05D005301 1.0e-42 177.6 187 54.5
Glyma.05G201200 Glycine max HOM05D003980 ORTHO05D005301 2.3e-42 176.4 174 57.5
AUR62009517 Chenopodium quinoa HOM05D003980 ORTHO05D005301 3.0e-42 176.0 187 54.0
unitig_22.g6271 Utricularia gibba HOM05D003980 ORTHO05D005301 3.0e-42 176.0 188 52.1
VMungo1309G0598 Vigna mungo HOM05D003980 ORTHO05D005301 5.2e-42 175.3 188 55.3
Glyma.04G200300 Glycine max HOM05D003980 ORTHO05D005301 1.5e-41 173.7 188 55.3
Sc04g0000260 Simmondsia chinensis HOM05D003980 ORTHO05D005301 4.4e-41 172.2 187 53.5
Phvul.002G282600 Phaseolus vulgaris HOM05D003980 ORTHO05D005301 5.7e-41 171.8 187 54.5
CANSAT56G3290 Cannabis sativa HOM05D003980 ORTHO05D005301 7.5e-41 171.4 186 54.8
MELO3C026163.2 Cucumis melo HOM05D003980 ORTHO05D005301 7.5e-41 171.4 187 55.1
Lj1g0007025 Lotus japonicus HOM05D003980 ORTHO05D005301 4.8e-40 168.7 187 53.5
Phvul.009G164700 Phaseolus vulgaris HOM05D003980 ORTHO05D005301 4.8e-40 168.7 188 52.7
TPR.G21586 Trifolium pratense HOM05D003980 ORTHO05D005301 8.3e-40 167.9 187 55.1
QL10p000901 Quercus lobata HOM05D003980 ORTHO05D005301 1.4e-39 167.2 187 53.5
Migut.I00610 Erythranthe guttata HOM05D003980 ORTHO05D005301 2.4e-39 166.4 188 52.7
Nn3g16303 Nelumbo nucifera HOM05D003980 ORTHO05D005301 4.1e-39 165.6 187 49.2
ClCG06G018320 Citrullus lanatus HOM05D003980 ORTHO05D005301 5.4e-39 165.2 187 53.5
ECA232G4466 Erigeron canadensis HOM05D003980 ORTHO05D005301 1.2e-38 164.1 189 51.9
Ca_10885_v3 Cicer arietinum L. HOM05D003980 ORTHO05D005301 1.6e-38 163.7 187 53.5
Hund02497 Selenicereus undatus HOM05D003980 ORTHO05D005301 1.6e-38 163.7 187 51.3
Ca_16085_v3 Cicer arietinum L. HOM05D003980 ORTHO05D005301 2.7e-38 162.9 187 53.5
TPR.G12812 Trifolium pratense HOM05D003980 ORTHO05D005301 2.7e-38 162.9 187 51.3
Ah.02g114660 Amaranthus hybridus HOM05D003980 ORTHO05D005301 3.5e-38 162.5 186 52.2
CsaV3_1G000110 Cucumis sativus L. HOM05D003980 ORTHO05D005301 3.5e-38 162.5 187 53.5
Lalb_Chr23g0272921 Lupinus albus HOM05D003980 ORTHO05D005301 4.5e-38 162.2 188 53.7
DCAR_025658 Daucus carota HOM05D003980 ORTHO05D005301 5.9e-38 161.8 187 51.3
PSO832G3889 Papaver somniferum HOM05D003980 ORTHO05D005301 5.9e-38 161.8 195 46.7
Psat7g039040 Pisum sativum HOM05D003980 ORTHO05D005301 1.0e-37 161.0 187 51.9
Lsat_1_v5_gn_4_84700 Lactuca sativa HOM05D003980 ORTHO05D005301 5.0e-37 158.7 190 52.1
PSO591G0475 Papaver somniferum HOM05D003980 ORTHO05D005301 6.5e-37 158.3 187 47.1
ATR0693G246 Amborella trichopoda HOM05D003980 ORTHO05D005301 8.5e-37 157.9 187 48.1
AUR62034771 Chenopodium quinoa HOM05D003980 ORTHO05D005301 1.1e-36 157.5 187 50.8
CiPaw.11G001400 Carya illinoinensis HOM05D003980 ORTHO05D005301 1.9e-36 156.8 187 49.2
Psat5g054480 Pisum sativum HOM05D003980 ORTHO05D005301 1.9e-36 156.8 187 52.4
HanXRQChr16g0498871 Helianthus annuus HOM05D003980 ORTHO05D005301 2.5e-36 156.4 191 50.8
THA.LOC104821537 Tarenaya hassleriana HOM05D003980 ORTHO05D005301 3.2e-36 156.0 186 48.9
Sed0025035 Sechium edule HOM05D003980 ORTHO05D005301 6.1e-35 151.8 187 49.7
Medtr3g498735 Medicago truncatula HOM05D003980 ORTHO05D005301 8.0e-35 151.4 185 52.4
A06p34620 Brassica napus HOM05D003980 ORTHO05D005301 3.0e-34 149.4 188 45.7
BraA06t26390Z Brassica rapa HOM05D003980 ORTHO05D005301 3.0e-34 149.4 188 44.7
C07p43870 Brassica napus HOM05D003980 ORTHO05D005301 4.0e-34 149.1 188 44.1
DCAR_021407 Daucus carota HOM05D003980 ORTHO05D005301 5.2e-34 148.7 195 48.2
CARHR189830 Cardamine hirsuta HOM05D003980 ORTHO05D005301 6.8e-34 148.3 186 44.6
Thhalv10003616m.g Eutrema salsugineum HOM05D003980 ORTHO05D005301 8.8e-34 147.9 185 43.2
AL6G34990 Arabidopsis lyrata HOM05D003980 ORTHO05D005301 1.2e-33 147.5 186 44.6
AT5G23720 Arabidopsis thaliana HOM05D003980 ORTHO05D005301 1.5e-33 147.1 186 44.1
Sabra12G0078100 Salix brachista HOM05D003980 ORTHO05D005301 2.6e-33 146.4 188 48.9
Aa31LG11G3070 Aethionema arabicum HOM05D003980 ORTHO05D005301 1.3e-32 144.1 188 44.7
BolC7t44915H Brassica oleracea HOM05D003980 ORTHO05D005301 1.3e-32 144.1 188 44.1
Glyma.06G165302 Glycine max HOM05D003980 ORTHO05D005301 4.9e-32 142.1 188 47.9
Psat5g054520 Pisum sativum HOM05D003980 ORTHO05D005301 1.1e-31 141.0 187 49.7
Sp2g23510 Schrenkiella parvula HOM05D003980 ORTHO05D005301 1.8e-31 140.2 186 41.9
Carub.0006s2147 Capsella rubella HOM05D003980 ORTHO05D005301 2.4e-31 139.8 186 43.0
GSVIVG01008633001 Vitis vinifera HOM05D003980 ORTHO05D005301 1.2e-30 137.5 139 58.3
HanXRQChr09g0273931 Helianthus annuus HOM05D003980 ORTHO05D005301 7.7e-30 134.8 187 47.1
HPP92_006911 Vanilla planifolia HOM05D003980 ORTHO05D005301 5.0e-29 132.1 190 45.3
Os01g0311500 Oryza sativa ssp. japonica HOM05D003980 ORTHO05D005301 8.6e-29 131.3 187 43.9
SEGI_36335 Sequoiadendron giganteum HOM05D003980 ORTHO05D005301 8.6e-29 131.3 194 41.2
CDE01G0794 Ceratophyllum demersum HOM05D003980 ORTHO05D005301 1.9e-28 130.2 188 46.8
Ca_14153_v3 Cicer arietinum L. HOM05D003980 ORTHO05D005301 3.3e-28 129.4 144 54.2
SHI14124 Sapria himalayana HOM05D003980 ORTHO05D005301 9.5e-28 127.9 187 44.4
arahy.Tifrunner.gnm1.ann1.1NY8SK Arachis hypogaea HOM05D003980 ORTHO05D005301 4.7e-27 125.6 188 42.0
BcaNung01844 Brassica carinata HOM05D003980 ORTHO05D005301 1.0e-26 124.4 155 47.7
Zm00001eb130450 Zea mays HOM05D003980 ORTHO05D005301 5.7e-25 118.6 187 43.3
CDE05G3070 Ceratophyllum demersum HOM05D003980 ORTHO05D005301 1.6e-22 110.5 187 40.6
Os01g0347000 Oryza sativa ssp. japonica HOM05D003980 ORTHO05D005301 2.0e-22 110.2 143 44.1
Zm00001eb340730 Zea mays HOM05D003980 ORTHO05D005301 4.6e-22 109.0 139 44.6
Hma1.2p1_1171F.1_g263500 Hydrangea macrophylla HOM05D003980 ORTHO05D005301 6.8e-18 95.1 49 87.8
arahy.Tifrunner.gnm1.ann1.2VM69K Arachis hypogaea HOM05D003980 ORTHO05D005301 4.4e-17 92.4 50 80.0
FAN04G0251 Fragaria x ananassa HOM05D003980 ORTHO05D005301 8.3e-16 88.2 49 85.7
Lsat_1_v5_gn_8_14540 Lactuca sativa HOM05D003847 ORTHO05D005301 1.6e-14 84.0 49 77.6
TPR.G30827 Trifolium pratense HOM05D003980 ORTHO05D005301 2.7e-14 83.2 50 80.0
DCAR_031844 Daucus carota HOM05D003980 ORTHO05D005301 4.6e-14 82.4 156 39.7
Actinidia18312 Actinidia chinensis HOM05D003980 ORTHO05D005301 7.8e-14 81.6 188 34.6
BcaNung01843 Brassica carinata HOM05D003980 ORTHO05D005301 2.3e-13 80.1 50 68.0
Mapoly0024s0055 Marchantia polymorpha HOM05D003980 ORTHO05D005301 2.2e-08 63.5 158 27.2
SMO116G0359 Selaginella moellendorffii HOM05D003980 ORTHO05D005301 2.2e-08 63.5 127 34.6
Pp3c9_1160 Physcomitrium patens HOM05D003980 ORTHO05D005301 3.7e-08 62.8 69 43.5
Pp3c9_1168 Physcomitrium patens HOM05D003980 ORTHO05D005301 3.7e-08 62.8 69 43.5


User provided reference genes

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