Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0007613g0030 Nicotiana tabacum HOM05D004415 ORTHO05D005198 7.4e-178 627.1 319 100.0
Nitab4.5_0010415g0030 Nicotiana tabacum HOM05D004415 ORTHO05D005198 1.6e-156 556.2 286 98.6
Solyc02g069640.3 Solanum lycopersicum HOM05D004415 ORTHO05D005198 6.8e-147 524.2 329 83.0
PGSC0003DMG400021134 Solanum tuberosum HOM05D004415 ORTHO05D005198 1.1e-144 516.9 296 89.5
Sopen02g018770 Solanum pennellii HOM05D004415 ORTHO05D005198 1.9e-144 516.2 296 89.5
Peaxi162Scf00195g00616 Petunia axillaris HOM05D004415 ORTHO05D005198 5.4e-144 514.6 296 88.2
CAN.G954.7 Capsicum annuum HOM05D004415 ORTHO05D005198 1.7e-134 483.0 281 89.0
Oeu063146.1 Olea europaea HOM05D004415 ORTHO05D005198 4.6e-127 458.4 294 79.6
Hma1.2p1_0008F-2.1_g005810 Hydrangea macrophylla HOM05D004415 ORTHO05D005198 6.6e-126 454.5 296 78.0
GSVIVG01037942001 Vitis vinifera HOM05D004415 ORTHO05D005198 7.3e-125 451.1 296 77.7
vmacro03476 Vaccinium macrocarpon HOM05D004415 ORTHO05D005198 8.1e-124 447.6 294 77.6
Actinidia29247 Actinidia chinensis HOM05D004415 ORTHO05D005198 1.4e-123 446.8 295 77.3
SalBow8G0313 Salvia bowleyana HOM05D004415 ORTHO05D005198 2.4e-123 446.0 298 75.2
FvH4_3g11520 Fragaria vesca HOM05D004415 ORTHO05D005198 3.1e-123 445.7 295 74.9
Dinv03287 Davidia involucrata HOM05D004415 ORTHO05D005198 5.2e-123 444.9 300 76.3
Rhsim13G0126400 Rhododendron simsii HOM05D004415 ORTHO05D005198 1.5e-122 443.4 294 77.2
SalBow8G4844 Salvia bowleyana HOM05D004415 ORTHO05D005198 1.5e-122 443.4 296 75.0
TAR627G0414 Trochodendron aralioides HOM05D004415 ORTHO05D005198 2.6e-122 442.6 296 76.0
TAR627G1150 Trochodendron aralioides HOM05D004415 ORTHO05D005198 2.6e-122 442.6 296 76.0
RcHm_v2.0_Chr5g0018471 Rosa chinensis HOM05D004415 ORTHO05D005198 3.4e-122 442.2 295 73.9
Cfa000755 Carpinus fangiana HOM05D004415 ORTHO05D005198 5.8e-122 441.4 295 76.9
Potri.001G440600 Populus trichocarpa HOM05D004415 ORTHO05D005198 7.6e-122 441.0 294 77.2
Lj1A1155G52 Lonicera japonica HOM05D004415 ORTHO05D005198 2.2e-121 439.5 294 77.9
Potri.011G155200 Populus trichocarpa HOM05D004415 ORTHO05D005198 4.9e-121 438.3 294 76.9
Ciclev10016110m.g Citrus clementina HOM05D004415 ORTHO05D005198 8.4e-121 437.6 294 76.5
Lalb_Chr11g0073471 Lupinus albus HOM05D004415 ORTHO05D005198 8.4e-121 437.6 295 74.9
MSTRG.16315 Avicennia marina HOM05D004415 ORTHO05D005198 1.9e-120 436.4 294 74.1
Cpa.g.sc173.46 Carica papaya HOM05D004415 ORTHO05D005198 2.4e-120 436.0 296 76.4
PGR083G0443 Punica granatum HOM05D004415 ORTHO05D005198 2.4e-120 436.0 296 75.3
Atru.chr10.660 Acer truncatum HOM05D004415 ORTHO05D005198 3.2e-120 435.6 295 75.9
arahy.Tifrunner.gnm1.ann1.ZSFV9B Arachis hypogaea HOM05D004415 ORTHO05D005198 3.2e-120 435.6 294 75.2
CANSAT35G0835 Cannabis sativa HOM05D004415 ORTHO05D005198 3.2e-120 435.6 298 74.5
Nn7g37839 Nelumbo nucifera HOM05D004415 ORTHO05D005198 5.4e-120 434.9 295 72.5
FAN21G2450 Fragaria x ananassa HOM05D004415 ORTHO05D005198 7.1e-120 434.5 313 70.9
MD00G1097300 Malus domestica HOM05D004415 ORTHO05D005198 9.3e-120 434.1 295 73.2
CSS0002194 Camellia sinensis var. sinensis HOM05D004415 ORTHO05D005198 1.2e-119 433.7 294 74.1
Phvul.009G218500 Phaseolus vulgaris HOM05D004415 ORTHO05D005198 1.2e-119 433.7 295 73.6
Thecc.06G005600 Theobroma cacao HOM05D004415 ORTHO05D005198 1.6e-119 433.3 294 75.9
Duzib235G0717 Durio zibethinus HOM05D004415 ORTHO05D005198 2.1e-119 433.0 294 75.2
Sabra16G0298000 Salix brachista HOM05D004415 ORTHO05D005198 2.7e-119 432.6 302 74.8
Ca_02386_v3 Cicer arietinum L. HOM05D004415 ORTHO05D005198 3.5e-119 432.2 294 74.8
FAN16G2189 Fragaria x ananassa HOM05D004415 ORTHO05D005198 3.5e-119 432.2 313 70.3
Migut.M01938 Erythranthe guttata HOM05D004415 ORTHO05D005198 7.8e-119 431.0 294 73.5
arahy.Tifrunner.gnm1.ann1.UW0JAL Arachis hypogaea HOM05D004415 ORTHO05D005198 1.0e-118 430.6 294 74.8
Sabra16G0300000 Salix brachista HOM05D004415 ORTHO05D005198 1.0e-118 430.6 302 74.5
CSS0048897 Camellia sinensis var. sinensis HOM05D004415 ORTHO05D005198 1.7e-118 429.9 294 73.1
SGA_v2.0_scaffold298G47634 Striga asiatica HOM05D004415 ORTHO05D005198 2.3e-118 429.5 294 74.1
CiPaw.09G149000 Carya illinoinensis HOM05D004415 ORTHO05D005198 3.0e-118 429.1 294 74.8
Lalb_Chr08g0233111 Lupinus albus HOM05D004415 ORTHO05D005198 5.1e-118 428.3 294 73.1
MSTRG.7566 Avicennia marina HOM05D004415 ORTHO05D005198 6.6e-118 427.9 294 74.8
Gohir.A06G202400 Gossypium hirsutum HOM05D004415 ORTHO05D005198 1.5e-117 426.8 294 74.1
Gorai.010G247000 Gossypium raimondii HOM05D004415 ORTHO05D005198 1.5e-117 426.8 294 74.5
TWI38G1449 Tripterygium wilfordii HOM05D004415 ORTHO05D005198 1.5e-117 426.8 294 73.5
Manes.16G062800 Manihot esculenta HOM05D004415 ORTHO05D005198 3.3e-117 425.6 294 73.8
ClCG01G008890 Citrullus lanatus HOM05D004415 ORTHO05D005198 4.3e-117 425.2 294 74.5
Sc17g0004090 Simmondsia chinensis HOM05D004415 ORTHO05D005198 4.3e-117 425.2 295 73.2
CsaV3_1G037760 Cucumis sativus L. HOM05D004415 ORTHO05D005198 7.3e-117 424.5 294 74.8
Ah.01g002800 Amaranthus hybridus HOM05D004415 ORTHO05D005198 9.6e-117 424.1 293 73.4
CDE03G0179 Ceratophyllum demersum HOM05D004415 ORTHO05D005198 2.1e-116 422.9 294 72.1
FAN25G0769 Fragaria x ananassa HOM05D004415 ORTHO05D005198 3.6e-116 422.2 313 69.3
Medtr2g047110 Medicago truncatula HOM05D004415 ORTHO05D005198 3.6e-116 422.2 294 72.1
unitig_37.g12064 Utricularia gibba HOM05D004415 ORTHO05D005198 4.8e-116 421.8 294 73.1
CSS0010489 Camellia sinensis var. sinensis HOM05D004415 ORTHO05D005198 6.2e-116 421.4 282 74.1
Hund01093 Selenicereus undatus HOM05D004415 ORTHO05D005198 8.1e-116 421.0 299 72.2
CDE06G2804 Ceratophyllum demersum HOM05D004415 ORTHO05D005198 1.5e-114 416.8 294 71.1
Ca_17811_v3 Cicer arietinum L. HOM05D004415 ORTHO05D005198 2.0e-114 416.4 296 70.9
COL.COLO4_22898 Corchorus olitorius HOM05D004415 ORTHO05D005198 3.4e-114 415.6 294 73.8
Sed0021762 Sechium edule HOM05D004415 ORTHO05D005198 9.9e-114 414.1 295 72.9
VMungo1309G0873 Vigna mungo HOM05D004415 ORTHO05D005198 9.9e-114 414.1 294 71.4
Psat1g018760 Pisum sativum HOM05D004415 ORTHO05D005198 1.7e-113 413.3 294 71.1
TPR.G22904 Trifolium pratense HOM05D004415 ORTHO05D005198 1.7e-113 413.3 305 68.9
QL05p063115 Quercus lobata HOM05D004415 ORTHO05D005198 2.9e-113 412.5 338 64.8
Aqoxy4G00050 Aquilegia oxysepala HOM05D004415 ORTHO05D005198 4.9e-113 411.8 293 71.7
Prupe.4G102500 Prunus persica HOM05D004415 ORTHO05D005198 6.4e-113 411.4 295 72.9
ATR1098G142 Amborella trichopoda HOM05D004415 ORTHO05D005198 5.4e-112 408.3 293 71.0
Glyma.15G191200 Glycine max HOM05D004415 ORTHO05D005198 5.4e-112 408.3 294 69.7
Thhalv10025893m.g Eutrema salsugineum HOM05D004415 ORTHO05D005198 1.2e-111 407.1 296 70.9
CARHR227240 Cardamine hirsuta HOM05D004415 ORTHO05D005198 1.6e-111 406.8 296 70.6
Carub.0007s2075 Capsella rubella HOM05D004415 ORTHO05D005198 2.1e-111 406.4 296 69.6
AUR62025006 Chenopodium quinoa HOM05D004415 ORTHO05D005198 2.7e-111 406.0 294 70.7
Sabra11G0144600 Salix brachista HOM05D004415 ORTHO05D005198 4.6e-111 405.2 277 76.2
THA.LOC104812930 Tarenaya hassleriana HOM05D004415 ORTHO05D005198 4.6e-111 405.2 296 68.9
Os04g0618500 Oryza sativa ssp. japonica HOM05D004415 ORTHO05D005198 6.0e-111 404.8 298 68.1
Sp7g18770 Schrenkiella parvula HOM05D004415 ORTHO05D005198 1.0e-110 404.1 296 69.6
AL7G33480 Arabidopsis lyrata HOM05D004415 ORTHO05D005198 1.3e-110 403.7 296 69.6
AT4G20410 Arabidopsis thaliana HOM05D004415 ORTHO05D005198 1.3e-110 403.7 296 69.3
Glyma.09G083100 Glycine max HOM05D004415 ORTHO05D005198 2.3e-110 402.9 294 70.4
Medtr8g089250 Medicago truncatula HOM05D004415 ORTHO05D005198 2.3e-110 402.9 294 68.0
AUR62006530 Chenopodium quinoa HOM05D004415 ORTHO05D005198 5.1e-110 401.7 294 70.1
TPR.G6264 Trifolium pratense HOM05D004415 ORTHO05D005198 6.6e-110 401.4 300 67.7
Sed0009944 Sechium edule HOM05D004415 ORTHO05D005198 2.5e-109 399.4 276 74.3
C01p14410 Brassica napus HOM05D004415 ORTHO05D005198 7.3e-109 397.9 296 68.9
BolC1t01398H Brassica oleracea HOM05D004415 ORTHO05D005198 7.3e-109 397.9 296 68.9
PSO675G6508 Papaver somniferum HOM05D004415 ORTHO05D005198 7.3e-109 397.9 309 67.3
arahy.Tifrunner.gnm1.ann1.5MZ6ZS Arachis hypogaea HOM05D004415 ORTHO05D005198 1.3e-108 397.1 295 67.5
arahy.Tifrunner.gnm1.ann1.Z0R64B Arachis hypogaea HOM05D004415 ORTHO05D005198 2.1e-108 396.4 295 67.1
A01p12100 Brassica napus HOM05D004415 ORTHO05D005198 2.1e-108 396.4 296 68.6
ECA236G1935 Erigeron canadensis HOM05D004415 ORTHO05D005198 1.4e-107 393.7 295 69.5
BraA01t01153Z Brassica rapa HOM05D004415 ORTHO05D005198 3.1e-107 392.5 296 68.2
Gorai.009G116300 Gossypium raimondii HOM05D004415 ORTHO05D005198 3.1e-107 392.5 293 69.3
HPP92_013188 Vanilla planifolia HOM05D004415 ORTHO05D005198 4.0e-107 392.1 293 68.9
PSO541G2694 Papaver somniferum HOM05D004415 ORTHO05D005198 1.5e-106 390.2 295 68.5
Lalb_Chr07g0185681 Lupinus albus HOM05D004415 ORTHO05D005198 2.0e-106 389.8 282 68.8
EL10Ac9g22486 Beta vulgaris HOM05D004415 ORTHO05D005198 5.8e-106 388.3 289 67.5
Aa31LG6G2800 Aethionema arabicum HOM05D004415 ORTHO05D005198 2.9e-105 386.0 296 68.2
Eucgr.D01029 Eucalyptus grandis HOM05D004415 ORTHO05D005198 4.9e-105 385.2 266 74.1
Gohir.D06G219300 Gossypium hirsutum HOM05D004415 ORTHO05D005198 4.8e-100 368.6 247 75.7
Haze_05963 Corylus avellana HOM05D004415 ORTHO05D005198 1.8e-99 366.7 285 68.4
Lsat_1_v5_gn_7_31101 Lactuca sativa HOM05D004415 ORTHO05D005198 1.4e-96 357.1 296 63.9
Hma1.2p1_0008F-2.1_g005800 Hydrangea macrophylla HOM05D004415 ORTHO05D005198 1.3e-94 350.5 217 81.1
Gohir.D05G112100 Gossypium hirsutum HOM05D004415 ORTHO05D005198 5.1e-94 348.6 318 59.7
Cc09_g04060 Coffea canephora HOM05D004415 ORTHO05D005198 1.0e-89 334.3 223 76.2
AagrBONN_evm.TU.Sc2ySwM_368.1346 Anthoceros agrestis HOM05D004415 ORTHO05D005198 2.5e-88 329.7 294 57.1
Lj6g0004921 Lotus japonicus HOM05D004415 ORTHO05D005198 6.7e-86 321.6 294 59.2
Zm00001eb431060 Zea mays HOM05D004415 ORTHO05D005198 4.1e-83 312.4 217 71.9
MELO3C021810.2 Cucumis melo HOM05D004415 ORTHO05D005198 5.3e-83 312.0 223 73.1
AagrBONN_evm.TU.Sc2ySwM_362.579 Anthoceros agrestis HOM05D004415 ORTHO05D005198 2.6e-82 309.7 294 55.8
Zm00001eb410240 Zea mays HOM05D004415 ORTHO05D005198 5.0e-81 305.4 209 70.8
HanXRQChr04g0119541 Helianthus annuus HOM05D004415 ORTHO05D005198 9.4e-80 301.2 223 69.5
AagrBONN_evm.TU.Sc2ySwM_368.3355 Anthoceros agrestis HOM05D004415 ORTHO05D005198 2.1e-79 300.1 294 54.4
arahy.Tifrunner.gnm1.ann1.QWIY8B Arachis hypogaea HOM05D004415 ORTHO05D005198 2.1e-79 300.1 273 58.2
Mapoly0008s0129 Marchantia polymorpha HOM05D004415 ORTHO05D005198 2.1e-79 300.1 294 53.1
Pp3c19_23300 Physcomitrium patens HOM05D004415 ORTHO05D005198 5.1e-78 295.4 313 51.8
SMO228G0081 Selaginella moellendorffii HOM05D004415 ORTHO05D005198 4.3e-77 292.4 262 56.9
CBR_g24190 Chara braunii HOM05D004415 ORTHO05D005198 7.4e-77 291.6 295 54.9
CDE03G0221 Ceratophyllum demersum HOM05D004415 ORTHO05D005198 9.4e-72 274.6 286 56.3
CBR_g48904 Chara braunii HOM05D004415 ORTHO05D005198 7.2e-64 248.4 256 52.7
arahy.Tifrunner.gnm1.ann1.09GK0V Arachis hypogaea HOM05D004415 ORTHO05D005198 1.8e-62 243.8 237 55.7
MBI02_g43828_MAGBIO Magnolia biondii HOM05D004415 ORTHO05D005198 6.7e-62 241.9 150 80.7
Duzib043G0003 Durio zibethinus HOM05D004415 ORTHO05D005198 1.8e-59 233.8 177 68.9
SEGI_29507 Sequoiadendron giganteum HOM05D004415 ORTHO05D005198 1.8e-59 233.8 162 71.0
arahy.Tifrunner.gnm1.ann1.6K3MVX Arachis hypogaea HOM05D004415 ORTHO05D005198 2.7e-55 219.9 177 60.5
Gohir.A05G111501 Gossypium hirsutum HOM05D004415 ORTHO05D005198 7.7e-50 201.8 203 57.1
arahy.Tifrunner.gnm1.ann1.W2C20P Arachis hypogaea HOM05D004415 ORTHO05D005198 4.7e-47 192.6 149 61.1
Zm00001eb072080 Zea mays HOM05D004415 ORTHO05D005198 8.8e-46 188.3 143 63.6
TAR627G0753 Trochodendron aralioides HOM05D004415 ORTHO05D005198 3.4e-45 186.4 135 68.9
Oeu063144.1 Olea europaea HOM05D004415 ORTHO05D005198 6.3e-44 182.2 185 57.3
arahy.Tifrunner.gnm1.ann1.NJ63RV Arachis hypogaea HOM05D004415 ORTHO05D005198 6.6e-41 172.2 136 66.9
MCO11G422 Micromonas commoda HOM05D004415 ORTHO05D005198 5.2e-38 162.5 266 36.1
VMungo0464G1344 Vigna mungo HOM05D004415 ORTHO05D005198 1.7e-33 147.5 106 67.9
SEGI_22365 Sequoiadendron giganteum HOM05D004415 ORTHO05D005198 1.8e-30 137.5 107 65.4
arahy.Tifrunner.gnm1.ann1.YAAB6X Arachis hypogaea HOM05D004415 ORTHO05D005198 5.2e-30 136.0 132 59.1
PRCOL_00005341 Prasinoderma coloniale HOM05D004415 ORTHO05D005198 1.2e-29 134.8 304 34.2
Zm00001eb266710 Zea mays HOM05D004415 ORTHO05D005198 1.2e-29 134.8 105 60.0
Cc09_g04070 Coffea canephora HOM05D004415 ORTHO05D005198 6.8e-22 109.0 66 81.8
FvH4_3g11480 Fragaria vesca HOM05D004415 ORTHO05D005198 9.8e-21 105.1 81 64.2
arahy.Tifrunner.gnm1.ann1.479FYN Arachis hypogaea HOM05D004415 ORTHO05D005198 4.9e-20 102.8 116 53.4
Cre08.g385700 Chlamydomonas reinhardtii HOM05D004415 ORTHO05D005198 6.4e-20 102.4 276 27.5
SGA_v2.0_scaffold298G47629 Striga asiatica HOM05D004415 ORTHO05D005198 1.4e-19 101.3 128 49.2
arahy.Tifrunner.gnm1.ann1.LII2ER Arachis hypogaea HOM05D004415 ORTHO05D005198 2.8e-15 87.0 98 54.1
arahy.Tifrunner.gnm1.ann1.8SCZ96 Arachis hypogaea HOM05D004415 ORTHO05D005198 6.8e-14 82.4 98 52.0
BcaB03g15995 Brassica carinata HOM05D004415 ORTHO05D005198 2.9e-12 77.0 108 47.2
SGA_v2.0_scaffold298G47630 Striga asiatica HOM05D004415 ORTHO05D005198 1.1e-08 65.1 60 56.7
HanXRQChr04g0119531 Helianthus annuus HOM05D004415 ORTHO05D005198 8.1e-07 58.9 36 72.2
VMungo0331G0484 Vigna mungo HOM05D003730 ORTHO05D005198 1.4e-06 58.2 43 62.8
GSVIVG01003362001 Vitis vinifera HOM05D004415 ORTHO05D005198 1.4e-06 58.2 52 55.8


User provided reference genes

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