Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0007609g0020 Nicotiana tabacum HOM05D005221 ORTHO05D006355 4.6e-99 364.8 212 100.0
Nitab4.5_0000321g0080 Nicotiana tabacum HOM05D005221 ORTHO05D006355 1.2e-75 287.0 194 86.6
Solyc06g054280.1 Solanum lycopersicum HOM05D005221 ORTHO05D006355 6.2e-64 248.1 201 74.1
Sopen06g019400 Solanum pennellii HOM05D005221 ORTHO05D006355 6.2e-64 248.1 201 74.6
PGSC0003DMG400011822 Solanum tuberosum HOM05D005221 ORTHO05D006355 1.8e-63 246.5 201 75.1
CAN.G873.5 Capsicum annuum HOM05D005221 ORTHO05D006355 1.0e-61 240.7 201 73.6
Peaxi162Scf00642g00022 Petunia axillaris HOM05D005221 ORTHO05D006355 2.5e-52 209.5 204 69.1
CAN.G668.8 Capsicum annuum HOM05D005221 ORTHO05D006355 2.3e-50 203.0 210 60.5
Nitab4.5_0000260g0100 Nicotiana tabacum HOM05D005221 ORTHO05D006355 2.0e-49 199.9 209 64.1
Nitab4.5_0001545g0020 Nicotiana tabacum HOM05D005221 ORTHO05D006355 7.4e-49 198.0 210 63.3
TWI53G0458 Tripterygium wilfordii HOM05D005221 ORTHO05D006355 1.0e-45 187.6 208 61.1
Peaxi162Scf00437g00052 Petunia axillaris HOM05D005221 ORTHO05D006355 2.9e-45 186.0 211 55.0
QL06p003360 Quercus lobata HOM05D005221 ORTHO05D006355 5.0e-45 185.3 208 60.1
Sopen09g030550 Solanum pennellii HOM05D005221 ORTHO05D006355 5.0e-45 185.3 208 62.5
Solyc09g075740.1 Solanum lycopersicum HOM05D005221 ORTHO05D006355 8.5e-45 184.5 206 64.6
CiPaw.01G163700 Carya illinoinensis HOM05D005221 ORTHO05D006355 1.9e-44 183.3 206 59.2
Cfa015617 Carpinus fangiana HOM05D005221 ORTHO05D006355 4.2e-44 182.2 207 64.3
PGSC0003DMG400031851 Solanum tuberosum HOM05D005221 ORTHO05D006355 4.2e-44 182.2 206 59.7
Potri.010G090700 Populus trichocarpa HOM05D005221 ORTHO05D006355 1.6e-43 180.3 208 60.1
Thecc.04G227300 Theobroma cacao HOM05D005221 ORTHO05D006355 3.6e-43 179.1 213 57.3
Oeu037551.1 Olea europaea HOM05D005221 ORTHO05D006355 7.9e-43 177.9 207 56.5
CSS0023930 Camellia sinensis var. sinensis HOM05D005221 ORTHO05D006355 1.8e-42 176.8 206 59.2
FvH4_4g15060 Fragaria vesca HOM05D005221 ORTHO05D006355 3.9e-42 175.6 212 53.3
FAN12G4146 Fragaria x ananassa HOM05D005221 ORTHO05D006355 6.7e-42 174.9 213 53.1
FAN07G2107 Fragaria x ananassa HOM05D005221 ORTHO05D006355 8.8e-42 174.5 213 54.0
FAN22G0945 Fragaria x ananassa HOM05D005221 ORTHO05D006355 2.6e-41 172.9 213 52.6
Cc03_g03470 Coffea canephora HOM05D005221 ORTHO05D006355 4.4e-41 172.2 214 53.3
Sabra10G0052800 Salix brachista HOM05D005221 ORTHO05D006355 5.7e-41 171.8 207 56.5
RcHm_v2.0_Chr4g0416801 Rosa chinensis HOM05D005221 ORTHO05D006355 1.3e-40 170.6 210 54.3
TWI09G0254 Tripterygium wilfordii HOM05D005221 ORTHO05D006355 2.8e-40 169.5 205 54.1
CiPaw.02G095300 Carya illinoinensis HOM05D005221 ORTHO05D006355 3.7e-40 169.1 224 50.4
TAR362G0899 Trochodendron aralioides HOM05D005221 ORTHO05D006355 8.2e-40 167.9 209 52.2
Duzib212G0790 Durio zibethinus HOM05D005221 ORTHO05D006355 1.4e-39 167.2 206 58.7
Sed0008919 Sechium edule HOM05D005221 ORTHO05D006355 4.1e-39 165.6 208 51.9
Duzib151G0158 Durio zibethinus HOM05D005221 ORTHO05D006355 5.3e-39 165.2 210 55.7
Manes.03G181200 Manihot esculenta HOM05D005221 ORTHO05D006355 5.3e-39 165.2 211 54.0
Sabra08G0114400 Salix brachista HOM05D005221 ORTHO05D006355 5.3e-39 165.2 207 57.0
Manes.15G026700 Manihot esculenta HOM05D005221 ORTHO05D006355 7.0e-39 164.9 205 54.1
Potri.008G150300 Populus trichocarpa HOM05D005221 ORTHO05D006355 7.0e-39 164.9 207 56.5
Prupe.1G155500 Prunus persica HOM05D005221 ORTHO05D006355 9.1e-39 164.5 209 53.6
TAR636G2071 Trochodendron aralioides HOM05D002203 ORTHO05D002647 1.2e-38 164.1 144 60.4
Actinidia23488 Actinidia chinensis HOM05D005221 ORTHO05D006355 2.0e-38 163.3 203 52.2
MELO3C014491.2 Cucumis melo HOM05D005221 ORTHO05D006355 2.0e-38 163.3 208 57.7
Lj5g0028012 Lotus japonicus HOM05D005221 ORTHO05D006355 2.0e-38 163.3 217 51.2
Nn4g26263 Nelumbo nucifera HOM05D005221 ORTHO05D006355 2.6e-38 162.9 202 51.0
Duzib052G0196 Durio zibethinus HOM05D005221 ORTHO05D006355 4.5e-38 162.2 197 48.7
CsaV3_6G038280 Cucumis sativus L. HOM05D005221 ORTHO05D006355 1.3e-37 160.6 148 55.4
Cpa.g.sc8.322 Carica papaya HOM05D005221 ORTHO05D006355 1.7e-37 160.2 214 54.2
Sed0012211 Sechium edule HOM05D005221 ORTHO05D006355 2.2e-37 159.8 208 50.0
Glyma.20G143700 Glycine max HOM05D005221 ORTHO05D006355 3.8e-37 159.1 222 56.8
Aqoxy2G03348 Aquilegia oxysepala HOM05D005221 ORTHO05D006355 5.0e-37 158.7 210 51.4
Nn1g02242 Nelumbo nucifera HOM05D005221 ORTHO05D006355 5.0e-37 158.7 221 51.6
Sc13g0004240 Simmondsia chinensis HOM05D005221 ORTHO05D006355 8.5e-37 157.9 222 51.8
Rhsim04G0205100 Rhododendron simsii HOM05D005221 ORTHO05D006355 1.1e-36 157.5 209 48.8
MD16G1188800 Malus domestica HOM05D005221 ORTHO05D006355 3.2e-36 156.0 204 49.5
COL.COLO4_06196 Corchorus olitorius HOM05D005221 ORTHO05D006355 4.2e-36 155.6 212 55.2
ClCG06G006000 Citrullus lanatus HOM05D005221 ORTHO05D006355 9.4e-36 154.5 200 57.0
Glyma.10G249900 Glycine max HOM05D005221 ORTHO05D006355 1.2e-35 154.1 227 51.5
MSTRG.21844 Avicennia marina HOM05D005221 ORTHO05D006355 3.6e-35 152.5 203 52.2
Gohir.D09G216800 Gossypium hirsutum HOM05D005221 ORTHO05D006355 1.0e-34 151.0 153 53.6
Phvul.007G054700 Phaseolus vulgaris HOM05D005221 ORTHO05D006355 1.0e-34 151.0 223 56.1
ECA234G2268 Erigeron canadensis HOM05D005221 ORTHO05D006355 1.4e-34 150.6 194 58.8
VMungo0720G0147 Vigna mungo HOM05D005221 ORTHO05D006355 2.3e-34 149.8 222 55.4
Hma1.2p1_0511F.1_g168910 Hydrangea macrophylla HOM05D005221 ORTHO05D006355 4.0e-34 149.1 150 58.0
Gorai.006G237300 Gossypium raimondii HOM05D005221 ORTHO05D006355 5.2e-34 148.7 153 52.9
Gohir.A09G214300 Gossypium hirsutum HOM05D005221 ORTHO05D006355 6.7e-34 148.3 154 53.2
Lj3P740T18 Lonicera japonica HOM05D005221 ORTHO05D006355 6.7e-34 148.3 147 53.1
DCAR_030618 Daucus carota HOM05D005221 ORTHO05D006355 2.6e-33 146.4 200 53.0
Hma1.2p1_0995F.1_g245620 Hydrangea macrophylla HOM05D005221 ORTHO05D006355 3.3e-33 146.0 150 56.0
TPR.G5529 Trifolium pratense HOM05D005221 ORTHO05D006355 3.3e-33 146.0 207 47.8
EL10As3g23360 Beta vulgaris HOM05D005221 ORTHO05D006355 7.5e-33 144.8 234 45.3
Ca_10924_v3 Cicer arietinum L. HOM05D005221 ORTHO05D006355 9.7e-33 144.4 229 49.3
THA.LOC104802759 Tarenaya hassleriana HOM05D005221 ORTHO05D006355 1.3e-32 144.1 197 55.8
FAN17G2349 Fragaria x ananassa HOM05D005221 ORTHO05D006355 1.7e-32 143.7 201 47.3
Sc19g0004310 Simmondsia chinensis HOM05D005221 ORTHO05D006355 1.7e-32 143.7 221 48.4
Medtr1g104840 Medicago truncatula HOM05D005221 ORTHO05D006355 6.3e-32 141.7 216 48.1
Ciclev10005615m.g Citrus clementina HOM05D005221 ORTHO05D006355 8.2e-32 141.4 241 47.3
Lalb_Chr06g0160581 Lupinus albus HOM05D005221 ORTHO05D006355 2.4e-31 139.8 202 57.4
Aqoxy5G00503 Aquilegia oxysepala HOM05D005221 ORTHO05D006355 3.1e-31 139.4 208 53.4
Lsat_1_v5_gn_5_148500 Lactuca sativa HOM05D005221 ORTHO05D006355 4.1e-31 139.0 195 55.9
Carub.0003s0539 Capsella rubella HOM05D005221 ORTHO05D006355 5.3e-31 138.7 155 52.9
MD13G1188400 Malus domestica HOM05D005221 ORTHO05D006355 9.1e-31 137.9 189 47.1
HanXRQChr10g0296561 Helianthus annuus HOM05D005221 ORTHO05D006355 2.0e-30 136.7 197 54.8
A05p42050 Brassica napus HOM05D005221 ORTHO05D006355 3.5e-30 136.0 146 54.1
DCAR_002395 Daucus carota HOM05D005221 ORTHO05D006355 3.5e-30 136.0 215 47.4
BraA05t22925Z Brassica rapa HOM05D005221 ORTHO05D006355 5.9e-30 135.2 148 52.7
BcaC05g30072 Brassica carinata HOM05D005221 ORTHO05D006355 7.7e-30 134.8 150 51.3
C05p61280 Brassica napus HOM05D005221 ORTHO05D006355 7.7e-30 134.8 150 51.3
BolC5t34787H Brassica oleracea HOM05D005221 ORTHO05D006355 7.7e-30 134.8 150 51.3
CANSAT78G1299 Cannabis sativa HOM05D005221 ORTHO05D006355 3.8e-29 132.5 252 42.1
AT3G05980 Arabidopsis thaliana HOM05D005221 ORTHO05D006355 1.5e-28 130.6 152 52.0
SGA_v2.0_scaffold10G05107 Striga asiatica HOM05D005221 ORTHO05D006355 3.2e-28 129.4 196 56.6
AL3G16790 Arabidopsis lyrata HOM05D005221 ORTHO05D006355 4.2e-28 129.0 155 52.3
THA.LOC104818779 Tarenaya hassleriana HOM05D005221 ORTHO05D006355 9.4e-28 127.9 147 51.0
Migut.N00171 Erythranthe guttata HOM05D005221 ORTHO05D006355 1.6e-27 127.1 149 50.3
Aa31LG5G16450 Aethionema arabicum HOM05D005221 ORTHO05D006355 6.1e-27 125.2 132 53.8
Thhalv10021379m.g Eutrema salsugineum HOM05D005221 ORTHO05D006355 8.0e-27 124.8 159 47.2
Sp3g04920 Schrenkiella parvula HOM05D005221 ORTHO05D006355 8.0e-27 124.8 158 48.1
HanXRQChr04g0110301 Helianthus annuus HOM05D005221 ORTHO05D006355 1.0e-26 124.4 133 58.6
PGR142G0441 Punica granatum HOM05D005221 ORTHO05D006355 1.0e-26 124.4 172 47.7
MBI17_g31753_MAGBIO Magnolia biondii HOM05D005221 ORTHO05D006355 3.0e-26 122.9 194 41.8
CARHR080490 Cardamine hirsuta HOM05D005221 ORTHO05D006355 4.0e-26 122.5 152 47.4
DCAR_024599 Daucus carota HOM05D005221 ORTHO05D006355 5.2e-26 122.1 201 44.3
Dinv38425 Davidia involucrata HOM05D005221 ORTHO05D006355 5.2e-26 122.1 136 60.3
BraA01t04457Z Brassica rapa HOM05D005221 ORTHO05D006355 8.8e-26 121.3 153 49.0
BcaC09g47869 Brassica carinata HOM05D005221 ORTHO05D006355 4.4e-25 119.0 187 48.1
BolC1t05645H Brassica oleracea HOM05D005221 ORTHO05D006355 7.5e-25 118.2 189 47.6
MSTRG.4014 Avicennia marina HOM05D005221 ORTHO05D006355 9.8e-25 117.9 149 52.3
Eucgr.B01092 Eucalyptus grandis HOM05D005221 ORTHO05D006355 1.3e-24 117.5 235 40.0
BolC9t58548H Brassica oleracea HOM05D005221 ORTHO05D006355 1.7e-24 117.1 165 46.1
BolC3t13571H Brassica oleracea HOM05D005221 ORTHO05D006355 4.1e-23 112.5 218 45.0
BcaB01g05141 Brassica carinata HOM05D005221 ORTHO05D006355 5.4e-23 112.1 218 45.0
A10p20340 Brassica napus HOM05D005221 ORTHO05D006355 7.0e-23 111.7 168 44.0
BraA10t44105Z Brassica rapa HOM05D005221 ORTHO05D006355 7.0e-23 111.7 168 44.0
BcaC04g18576 Brassica carinata HOM05D005221 ORTHO05D006355 9.1e-23 111.3 170 43.5
C09p56940 Brassica napus HOM05D005221 ORTHO05D006355 9.1e-23 111.3 170 43.5
C03p11020 Brassica napus HOM05D005221 ORTHO05D006355 2.7e-22 109.8 218 44.5
BraA03t10262Z Brassica rapa HOM05D005221 ORTHO05D006355 4.5e-22 109.0 222 42.8
BcaB01g04866 Brassica carinata HOM05D005221 ORTHO05D006355 2.2e-21 106.7 211 43.1
BcaNung07026 Brassica carinata HOM05D005221 ORTHO05D006355 5.0e-21 105.5 159 42.1
PSO302G0248 Papaver somniferum HOM05D005221 ORTHO05D006355 1.5e-20 104.0 150 48.0
Oeu029026.1 Olea europaea HOM05D005221 ORTHO05D006355 1.9e-20 103.6 137 47.4
Atru.chr4.2515 Acer truncatum HOM05D005221 ORTHO05D006355 2.5e-20 103.2 194 39.7
AUR62038640 Chenopodium quinoa HOM05D005221 ORTHO05D006355 4.2e-20 102.4 160 41.2
Nn5g28878 Nelumbo nucifera HOM05D005221 ORTHO05D006355 5.5e-20 102.1 93 55.9
PGR004G1499 Punica granatum HOM05D005221 ORTHO05D006355 9.4e-20 101.3 229 36.2
A03p09440 Brassica napus HOM05D005221 ORTHO05D006355 1.2e-19 100.9 221 41.6
Thhalv10016073m.g Eutrema salsugineum HOM05D005221 ORTHO05D006355 1.2e-19 100.9 172 43.6
AT5G19340 Arabidopsis thaliana HOM05D005221 ORTHO05D006355 1.6e-19 100.5 238 42.4
BcaB08g36581 Brassica carinata HOM05D005221 ORTHO05D006355 2.7e-19 99.8 161 42.2
Carub.0006s1768 Capsella rubella HOM05D005221 ORTHO05D006355 3.0e-18 96.3 238 40.8
Lj6P597T84 Lonicera japonica HOM05D005221 ORTHO05D006355 8.8e-18 94.7 80 62.5
Nn3g20708 Nelumbo nucifera HOM05D005221 ORTHO05D006355 4.4e-17 92.4 114 47.4
SGA_v2.0_scaffold237G43792 Striga asiatica HOM05D005221 ORTHO05D006355 1.8e-15 87.0 159 39.0
Ah.04g154490 Amaranthus hybridus HOM05D005221 ORTHO05D006355 4.1e-15 85.9 161 47.2
arahy.Tifrunner.gnm1.ann1.0RM5BV Arachis hypogaea HOM05D005221 ORTHO05D006355 4.1e-15 85.9 115 44.3
CARHR193620 Cardamine hirsuta HOM05D005221 ORTHO05D006355 2.7e-14 83.2 239 38.9
AL6G30830 Arabidopsis lyrata HOM05D005221 ORTHO05D006355 7.7e-14 81.6 213 39.9
Sp6g25070 Schrenkiella parvula HOM05D005221 ORTHO05D006355 7.7e-14 81.6 150 38.7
AUR62038093 Chenopodium quinoa HOM05D005221 ORTHO05D006355 1.9e-12 77.0 149 36.2
ATR0626G396 Amborella trichopoda HOM05D005221 ORTHO05D006355 3.4e-09 66.2 133 37.6
Nn1g04890 Nelumbo nucifera HOM05D002458 ORTHO05D002603 3.4e-09 66.2 127 35.4
Psat6g208720 Pisum sativum HOM05D005221 ORTHO05D006355 1.3e-08 64.3 39 71.8
SGA_v2.0_scaffold39G15291 Striga asiatica HOM05D005221 ORTHO05D006355 2.2e-08 63.5 150 31.3
CiPaw.01G019100 Carya illinoinensis HOM05D002458 ORTHO05D002603 1.1e-07 61.2 127 33.1
Manes.12G102900 Manihot esculenta HOM05D002458 ORTHO05D002603 1.8e-07 60.5 130 33.1
Actinidia16500 Actinidia chinensis HOM05D002458 ORTHO05D002603 3.2e-07 59.7 132 34.8
Nn5g30245 Nelumbo nucifera HOM05D002458 ORTHO05D002603 4.1e-07 59.3 127 35.4
Haze_15416 Corylus avellana HOM05D002458 ORTHO05D002603 7.0e-07 58.5 127 33.1
TAR628G0915 Trochodendron aralioides HOM05D002458 ORTHO05D002603 9.2e-07 58.2 127 33.9
CsaV3_2G016870 Cucumis sativus L. HOM05D002458 ORTHO05D002603 1.6e-06 57.4 131 36.6
THA.LOC104826982 Tarenaya hassleriana HOM05D002458 ORTHO05D002603 1.6e-06 57.4 142 32.4
Peaxi162Scf00450g00733 Petunia axillaris HOM05D002458 ORTHO05D002603 2.0e-06 57.0 127 34.6
Nitab4.5_0000728g0040 Nicotiana tabacum HOM05D002458 ORTHO05D002603 4.6e-06 55.8 135 34.1
CSS0037574 Camellia sinensis var. sinensis HOM05D002458 ORTHO05D002603 5.9e-06 55.5 127 36.2
Nn1g06084 Nelumbo nucifera HOM05D005221 ORTHO05D006355 5.9e-06 55.5 34 67.6
Manes.13G127400 Manihot esculenta HOM05D002458 ORTHO05D002603 7.8e-06 55.1 133 31.6


User provided reference genes

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