Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0007594g0010 Nicotiana tabacum HOM05D007041 ORTHO05D008036 4.5e-74 281.2 142 100.0
Nitab4.5_0000305g0050 Nicotiana tabacum HOM05D007041 ORTHO05D008036 3.9e-62 241.5 143 86.0
Peaxi162Scf00843g00001 Petunia axillaris HOM05D007041 ORTHO05D008036 1.0e-33 147.1 149 60.4
Rhsim01G0170500 Rhododendron simsii HOM05D007041 ORTHO05D008036 1.8e-14 83.2 129 41.9
PGSC0003DMG400000096 Solanum tuberosum HOM05D007041 ORTHO05D008036 1.8e-14 83.2 138 37.7
Rhsim01G0170200 Rhododendron simsii HOM05D007041 ORTHO05D008036 5.2e-14 81.6 126 42.9
Actinidia28494 Actinidia chinensis HOM05D000017 ORTHO05D008036 1.2e-13 80.5 118 43.2
CiPaw.02G039100 Carya illinoinensis HOM05D007041 ORTHO05D008036 1.2e-13 80.5 107 43.0
Oeu007855.1 Olea europaea HOM05D007041 ORTHO05D008036 1.5e-13 80.1 107 43.9
CSS0019600 Camellia sinensis var. sinensis HOM05D007041 ORTHO05D008036 2.0e-13 79.7 118 39.0
vmacro22517 Vaccinium macrocarpon HOM05D007041 ORTHO05D008036 3.4e-13 79.0 133 42.9
Rhsim07G0006100 Rhododendron simsii HOM05D000337 ORTHO05D000297 7.5e-13 77.8 116 44.8
CSS0049473 Camellia sinensis var. sinensis HOM05D007041 ORTHO05D008036 1.3e-12 77.0 119 39.5
FAN03G1744 Fragaria x ananassa HOM05D007041 ORTHO05D008036 1.7e-12 76.6 60 61.7
MD07G1146000 Malus domestica HOM05D007041 ORTHO05D008036 3.7e-12 75.5 119 42.9
Glyma.16G026800 Glycine max HOM05D007041 ORTHO05D008036 6.3e-12 74.7 120 35.0
Prupe.2G184300 Prunus persica HOM05D007041 ORTHO05D008036 6.3e-12 74.7 136 39.7
FvH4_7g16050 Fragaria vesca HOM05D007041 ORTHO05D008036 8.3e-12 74.3 60 58.3
FAN10G1361 Fragaria x ananassa HOM05D007041 ORTHO05D008036 8.3e-12 74.3 60 58.3
FAN10G2988 Fragaria x ananassa HOM05D007041 ORTHO05D008036 8.3e-12 74.3 60 58.3
Glyma.07G057800 Glycine max HOM05D007041 ORTHO05D008036 8.3e-12 74.3 128 35.9
TAR636G2915 Trochodendron aralioides HOM05D007041 ORTHO05D008036 8.3e-12 74.3 122 42.6
CiPaw.01G073300 Carya illinoinensis HOM05D007041 ORTHO05D008036 1.1e-11 73.9 93 46.2
vmacro22516 Vaccinium macrocarpon HOM05D007041 ORTHO05D008036 1.4e-11 73.6 122 41.8
SalBow3G2736 Salvia bowleyana HOM05D007041 ORTHO05D008036 1.8e-11 73.2 122 34.4
EL10Ac1g00306 Beta vulgaris HOM05D007041 ORTHO05D008036 3.1e-11 72.4 118 38.1
FAN06G2039 Fragaria x ananassa HOM05D007041 ORTHO05D008036 5.4e-11 71.6 60 56.7
FAN06G3979 Fragaria x ananassa HOM05D007041 ORTHO05D008036 5.4e-11 71.6 60 56.7
Manes.05G025400 Manihot esculenta HOM05D007041 ORTHO05D008036 5.4e-11 71.6 101 42.6
Gohir.D08G147100 Gossypium hirsutum HOM05D007041 ORTHO05D008036 9.2e-11 70.9 37 81.1
Gorai.004G152600 Gossypium raimondii HOM05D007041 ORTHO05D008036 9.2e-11 70.9 37 81.1
Lj3g0003817 Lotus japonicus HOM05D007041 ORTHO05D008036 9.2e-11 70.9 120 40.8
TPR.G7659 Trifolium pratense HOM05D007041 ORTHO05D008036 9.2e-11 70.9 114 39.5
Lsat_1_v5_gn_7_2180 Lactuca sativa HOM05D007041 ORTHO05D008036 1.6e-10 70.1 132 37.1
VMungo0331G1585 Vigna mungo HOM05D007041 ORTHO05D008036 1.6e-10 70.1 109 37.6
arahy.Tifrunner.gnm1.ann1.LKBY4F Arachis hypogaea HOM05D007041 ORTHO05D008036 3.5e-10 68.9 62 51.6
CSS0039531 Camellia sinensis var. sinensis HOM05D007041 ORTHO05D008036 4.5e-10 68.6 83 44.6
RcHm_v2.0_Chr1g0358991 Rosa chinensis HOM05D007041 ORTHO05D008036 4.5e-10 68.6 131 39.7
ECA236G3839 Erigeron canadensis HOM05D007041 ORTHO05D008036 5.9e-10 68.2 123 38.2
TAR629G2489 Trochodendron aralioides HOM05D007041 ORTHO05D008036 5.9e-10 68.2 120 36.7
vmacro22515 Vaccinium macrocarpon HOM05D007041 ORTHO05D008036 7.8e-10 67.8 122 41.8
arahy.Tifrunner.gnm1.ann1.JU2T19 Arachis hypogaea HOM05D007041 ORTHO05D008036 2.3e-09 66.2 44 61.4
Cpa.g.sc2382.1 Carica papaya HOM05D007041 ORTHO05D008036 2.9e-09 65.9 49 65.3
Sabra14G0070100 Salix brachista HOM05D007041 ORTHO05D008036 2.9e-09 65.9 65 50.8
Thecc.01G346300 Theobroma cacao HOM05D007041 ORTHO05D008036 2.9e-09 65.9 55 54.5
AL5G44060 Arabidopsis lyrata HOM05D007041 ORTHO05D008036 3.8e-09 65.5 98 38.8
A09p53730 Brassica napus HOM05D007041 ORTHO05D008036 3.8e-09 65.5 35 77.1
Migut.B01841 Erythranthe guttata HOM05D007041 ORTHO05D008036 3.8e-09 65.5 83 44.6
Sp5g01745 Schrenkiella parvula HOM05D007041 ORTHO05D008036 3.8e-09 65.5 38 71.1
BraA09t40795Z Brassica rapa HOM05D007041 ORTHO05D008036 6.6e-09 64.7 114 36.8
Oeu007854.1 Olea europaea HOM05D007041 ORTHO05D008036 1.1e-08 63.9 126 35.7
QL02p031389 Quercus lobata HOM05D007041 ORTHO05D008036 1.1e-08 63.9 107 33.6
COL.COLO4_06320 Corchorus olitorius HOM05D007041 ORTHO05D008036 1.5e-08 63.5 57 59.6
Medtr8g027305 Medicago truncatula HOM05D007041 ORTHO05D008036 1.5e-08 63.5 57 59.6
Nn1g01816 Nelumbo nucifera HOM05D007041 ORTHO05D008036 1.5e-08 63.5 44 65.9
Potri.014G095600 Populus trichocarpa HOM05D007041 ORTHO05D008036 1.5e-08 63.5 58 51.7
Lalb_Chr17g0342361 Lupinus albus HOM05D007041 ORTHO05D008036 1.9e-08 63.2 118 35.6
Medtr8g027905 Medicago truncatula HOM05D001941 ORTHO05D008036 1.9e-08 63.2 108 38.9
Phvul.010G111500 Phaseolus vulgaris HOM05D007041 ORTHO05D008036 1.9e-08 63.2 122 35.2
AT3G61660 Arabidopsis thaliana HOM05D007041 ORTHO05D008036 2.5e-08 62.8 35 71.4
C08p36510 Brassica napus HOM05D007041 ORTHO05D008036 2.5e-08 62.8 123 35.0
BolC8t51234H Brassica oleracea HOM05D007041 ORTHO05D008036 2.5e-08 62.8 123 35.0
Potri.003G137600 Populus trichocarpa HOM05D007041 ORTHO05D008036 2.5e-08 62.8 96 42.7
CARHR171970 Cardamine hirsuta HOM05D007041 ORTHO05D008036 3.3e-08 62.4 101 36.6
CiPaw.12G084900 Carya illinoinensis HOM05D007041 ORTHO05D008036 4.3e-08 62.0 105 35.2
Manes.02G012350 Manihot esculenta HOM05D007041 ORTHO05D008036 4.3e-08 62.0 122 32.0
Carub.0005s2835 Capsella rubella HOM05D007041 ORTHO05D008036 5.6e-08 61.6 107 33.6
Thhalv10006386m.g Eutrema salsugineum HOM05D007041 ORTHO05D008036 7.3e-08 61.2 114 35.1
TPR.G7661 Trifolium pratense HOM05D007041 ORTHO05D008036 7.3e-08 61.2 101 39.6
Glyma.19G254100 Glycine max HOM05D007041 ORTHO05D008036 9.5e-08 60.8 41 61.0
CANSAT56G1227 Cannabis sativa HOM05D007041 ORTHO05D008036 1.2e-07 60.5 112 37.5
Gohir.A07G139300 Gossypium hirsutum HOM05D007041 ORTHO05D008036 1.2e-07 60.5 71 40.8
SGA_v2.0_scaffold11G05722 Striga asiatica HOM05D007041 ORTHO05D008036 1.6e-07 60.1 126 35.7
Atru.chr5.628 Acer truncatum HOM05D007041 ORTHO05D008036 2.1e-07 59.7 116 35.3
MELO3C006045.2 Cucumis melo HOM05D007041 ORTHO05D008036 2.8e-07 59.3 85 40.0
Gohir.D07G144400 Gossypium hirsutum HOM05D007041 ORTHO05D008036 2.8e-07 59.3 71 42.3
Gorai.001G156400 Gossypium raimondii HOM05D007041 ORTHO05D008036 2.8e-07 59.3 71 42.3
arahy.Tifrunner.gnm1.ann1.3XXF02 Arachis hypogaea HOM05D007041 ORTHO05D008036 3.6e-07 58.9 101 36.6
Haze_08658 Corylus avellana HOM05D007041 ORTHO05D008036 3.6e-07 58.9 78 37.2
CsaV3_3G008250 Cucumis sativus L. HOM05D007041 ORTHO05D008036 3.6e-07 58.9 51 56.9
Manes.02G012400 Manihot esculenta HOM05D007041 ORTHO05D008036 3.6e-07 58.9 127 30.7
Zm00001eb310140 Zea mays HOM05D007041 ORTHO05D008036 3.6e-07 58.9 50 50.0
Zm00001eb441140 Zea mays HOM05D007041 ORTHO05D008036 3.6e-07 58.9 50 50.0
RcHm_v2.0_Chr7g0195411 Rosa chinensis HOM05D017100 ORTHO05D008036 4.7e-07 58.5 68 50.0
Medtr8g027915 Medicago truncatula HOM05D007041 ORTHO05D008036 8.0e-07 57.8 48 54.2
Potri.001G094000 Populus trichocarpa HOM05D007041 ORTHO05D008036 1.0e-06 57.4 112 33.9
Sc01g0010130 Simmondsia chinensis HOM05D007041 ORTHO05D008036 1.0e-06 57.4 28 78.6
Nn3g19073 Nelumbo nucifera HOM05D007041 ORTHO05D008036 1.4e-06 57.0 55 54.5
Sed0010994 Sechium edule HOM05D007041 ORTHO05D008036 1.4e-06 57.0 28 82.1
Lj1g0010364 Lotus japonicus HOM05D007041 ORTHO05D008036 1.8e-06 56.6 98 33.7
Nitab4.5_0004161g0040 Nicotiana tabacum HOM05D007041 ORTHO05D008036 1.8e-06 56.6 55 50.9
Oeu009948.1 Olea europaea HOM05D007041 ORTHO05D008036 2.3e-06 56.2 40 52.5
MSTRG.13877 Avicennia marina HOM05D007041 ORTHO05D008036 3.0e-06 55.8 47 55.3
Nn2g15118 Nelumbo nucifera HOM05D007041 ORTHO05D008036 3.0e-06 55.8 43 62.8
AUR62023489 Chenopodium quinoa HOM05D007041 ORTHO05D008036 4.0e-06 55.5 38 63.2
Gohir.A12G234950 Gossypium hirsutum HOM05D007041 ORTHO05D008036 4.0e-06 55.5 39 56.4
Gohir.D12G236050 Gossypium hirsutum HOM05D007041 ORTHO05D008036 4.0e-06 55.5 39 56.4
Gorai.008G252800 Gossypium raimondii HOM05D007041 ORTHO05D008036 4.0e-06 55.5 39 56.4
Prupe.5G115500 Prunus persica HOM05D007041 ORTHO05D008036 4.0e-06 55.5 91 33.0
Sabra01G0069900 Salix brachista HOM05D007041 ORTHO05D008036 5.2e-06 55.1 110 34.5
Sabra02G0143600 Salix brachista HOM05D007041 ORTHO05D008036 5.2e-06 55.1 58 46.6
PGSC0003DMG400012302 Solanum tuberosum HOM05D007041 ORTHO05D008036 5.2e-06 55.1 100 33.0
Thecc.03G293400 Theobroma cacao HOM05D007041 ORTHO05D008036 8.9e-06 54.3 46 52.2
HPP92_007621 Vanilla planifolia HOM05D007041 ORTHO05D008036 8.9e-06 54.3 82 39.0


User provided reference genes

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