Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0007565g0030 Nicotiana tabacum HOM05D004541 ORTHO05D006163 0.0e+00 1616.7 788 100.0
Solyc09g007300.3 Solanum lycopersicum HOM05D004541 ORTHO05D006163 0.0e+00 1483.0 764 93.6
CAN.G608.21 Capsicum annuum HOM05D004541 ORTHO05D006163 0.0e+00 1479.2 764 93.1
Peaxi162Scf00005g04811 Petunia axillaris HOM05D004541 ORTHO05D006163 0.0e+00 1435.6 764 91.8
Nitab4.5_0001142g0040 Nicotiana tabacum HOM05D004541 ORTHO05D006163 0.0e+00 1422.1 740 93.5
Dinv41612 Davidia involucrata HOM05D004541 ORTHO05D006163 0.0e+00 1366.3 767 86.0
CSS0034093 Camellia sinensis var. sinensis HOM05D004541 ORTHO05D006163 0.0e+00 1359.0 768 84.6
Actinidia07413 Actinidia chinensis HOM05D004541 ORTHO05D006163 0.0e+00 1355.5 768 83.5
Eucgr.C03820 Eucalyptus grandis HOM05D004541 ORTHO05D006163 0.0e+00 1341.3 767 83.4
Thecc.09G109100 Theobroma cacao HOM05D004541 ORTHO05D006163 0.0e+00 1340.9 766 83.6
COL.COLO4_34849 Corchorus olitorius HOM05D004541 ORTHO05D006163 0.0e+00 1335.9 768 83.3
Duzib187G1831 Durio zibethinus HOM05D004541 ORTHO05D006163 0.0e+00 1335.9 768 82.6
CSS0021602 Camellia sinensis var. sinensis HOM05D004541 ORTHO05D006163 0.0e+00 1334.3 737 85.2
Cc06_g09760 Coffea canephora HOM05D004541 ORTHO05D006163 0.0e+00 1332.4 765 83.4
Manes.16G115100 Manihot esculenta HOM05D004541 ORTHO05D006163 0.0e+00 1332.4 769 83.0
vmacro06222 Vaccinium macrocarpon HOM05D004541 ORTHO05D006163 0.0e+00 1328.2 768 82.4
TAR383G1084 Trochodendron aralioides HOM05D004541 ORTHO05D006163 0.0e+00 1324.3 776 82.9
GSVIVG01015382001 Vitis vinifera HOM05D004541 ORTHO05D006163 0.0e+00 1322.8 769 82.7
CANSAT56G4378 Cannabis sativa HOM05D004541 ORTHO05D006163 0.0e+00 1321.6 769 81.7
Lj7A652G69 Lonicera japonica HOM05D004541 ORTHO05D006163 0.0e+00 1320.8 765 82.7
CANSAT56G2738 Cannabis sativa HOM05D004541 ORTHO05D006163 0.0e+00 1319.7 769 81.5
Ca_20226_v3 Cicer arietinum L. HOM05D004541 ORTHO05D006163 0.0e+00 1319.7 768 82.0
Prupe.7G232300 Prunus persica HOM05D004541 ORTHO05D006163 0.0e+00 1318.5 769 81.8
Phvul.004G164500 Phaseolus vulgaris HOM05D004541 ORTHO05D006163 0.0e+00 1318.1 768 81.2
FAN23G1653 Fragaria x ananassa HOM05D004541 ORTHO05D006163 0.0e+00 1316.2 769 81.3
Potri.018G081400 Populus trichocarpa HOM05D004541 ORTHO05D006163 0.0e+00 1315.8 750 82.9
FvH4_1g04670 Fragaria vesca HOM05D004541 ORTHO05D006163 0.0e+00 1315.1 767 81.5
CiPaw.03G231000 Carya illinoinensis HOM05D004541 ORTHO05D006163 0.0e+00 1313.9 768 81.5
ClCG06G008600 Citrullus lanatus HOM05D004541 ORTHO05D006163 0.0e+00 1312.7 772 81.5
Atru.chr7.1362 Acer truncatum HOM05D004541 ORTHO05D006163 0.0e+00 1310.8 768 82.2
MELO3C025349.2 Cucumis melo HOM05D004541 ORTHO05D006163 0.0e+00 1308.5 767 81.0
Glyma.09G191400 Glycine max HOM05D004541 ORTHO05D006163 0.0e+00 1307.7 767 80.8
Medtr6g087520 Medicago truncatula HOM05D004541 ORTHO05D006163 0.0e+00 1307.7 769 81.8
CsaV3_1G024300 Cucumis sativus L. HOM05D004541 ORTHO05D006163 0.0e+00 1307.4 766 81.1
Psat1g043400 Pisum sativum HOM05D004541 ORTHO05D006163 0.0e+00 1307.0 768 81.6
RcHm_v2.0_Chr2g0090281 Rosa chinensis HOM05D004541 ORTHO05D006163 0.0e+00 1307.0 768 81.0
Sabra18G0068500 Salix brachista HOM05D004541 ORTHO05D006163 0.0e+00 1306.2 738 83.9
VMungo0464G1118 Vigna mungo HOM05D004541 ORTHO05D006163 0.0e+00 1306.2 767 80.7
Glyma.07G085500 Glycine max HOM05D004541 ORTHO05D006163 0.0e+00 1305.4 769 81.0
Gorai.004G280300 Gossypium raimondii HOM05D004541 ORTHO05D006163 0.0e+00 1305.4 768 81.4
Gohir.A08G241500 Gossypium hirsutum HOM05D004541 ORTHO05D006163 0.0e+00 1304.7 766 81.7
QL02p040000 Quercus lobata HOM05D004541 ORTHO05D006163 0.0e+00 1303.9 767 82.1
Lalb_Chr09g0331191 Lupinus albus HOM05D004541 ORTHO05D006163 0.0e+00 1303.1 768 80.9
Gohir.A05G023600 Gossypium hirsutum HOM05D004541 ORTHO05D006163 0.0e+00 1301.6 768 80.3
Migut.J01157 Erythranthe guttata HOM05D004541 ORTHO05D006163 0.0e+00 1300.0 766 80.8
Gohir.D08G262300 Gossypium hirsutum HOM05D004541 ORTHO05D006163 0.0e+00 1297.0 766 82.1
Sed0019002 Sechium edule HOM05D004541 ORTHO05D006163 0.0e+00 1295.8 769 80.8
FAN19G1993 Fragaria x ananassa HOM05D004541 ORTHO05D006163 0.0e+00 1295.4 739 82.7
Lj2g0016785 Lotus japonicus HOM05D004541 ORTHO05D006163 0.0e+00 1295.4 769 80.5
MD15G1183900 Malus domestica HOM05D004541 ORTHO05D006163 0.0e+00 1295.0 768 81.1
Oeu018244.1 Olea europaea HOM05D004541 ORTHO05D006163 0.0e+00 1295.0 768 80.9
Gorai.009G025200 Gossypium raimondii HOM05D004541 ORTHO05D006163 0.0e+00 1294.6 768 80.3
ECA234G1988 Erigeron canadensis HOM05D004541 ORTHO05D006163 0.0e+00 1293.9 769 80.6
TPR.G10041 Trifolium pratense HOM05D004541 ORTHO05D006163 0.0e+00 1289.6 769 80.6
Ciclev10007326m.g Citrus clementina HOM05D004541 ORTHO05D006163 0.0e+00 1289.2 768 79.2
Nitab4.5_0000754g0130 Nicotiana tabacum HOM05D004541 ORTHO05D006163 0.0e+00 1289.2 735 83.3
Rhsim03G0241000 Rhododendron simsii HOM05D004541 ORTHO05D006163 0.0e+00 1287.3 760 80.8
DCAR_024689 Daucus carota HOM05D004541 ORTHO05D006163 0.0e+00 1286.6 740 81.8
HanXRQChr10g0318611 Helianthus annuus HOM05D004541 ORTHO05D006163 0.0e+00 1281.9 769 79.2
Sp6g24730 Schrenkiella parvula HOM05D004541 ORTHO05D006163 0.0e+00 1281.9 765 80.1
Thhalv10012541m.g Eutrema salsugineum HOM05D004541 ORTHO05D006163 0.0e+00 1281.5 764 80.9
PGR102G1372 Punica granatum HOM05D004541 ORTHO05D006163 0.0e+00 1281.2 767 80.3
TWI34G1287 Tripterygium wilfordii HOM05D004541 ORTHO05D006163 0.0e+00 1280.8 768 80.5
Aqoxy7G01635 Aquilegia oxysepala HOM05D004541 ORTHO05D006163 0.0e+00 1278.8 773 79.0
THA.LOC104804980 Tarenaya hassleriana HOM05D004541 ORTHO05D006163 0.0e+00 1275.0 754 80.2
unitig_8.g3279 Utricularia gibba HOM05D004541 ORTHO05D006163 0.0e+00 1272.3 760 78.4
BolC3t13584H Brassica oleracea HOM05D004541 ORTHO05D006163 0.0e+00 1271.9 765 79.5
AL6G31170 Arabidopsis lyrata HOM05D004541 ORTHO05D006163 0.0e+00 1271.5 766 79.8
A03p09570 Brassica napus HOM05D004541 ORTHO05D006163 0.0e+00 1270.8 765 79.5
Carub.0006s1801 Capsella rubella HOM05D004541 ORTHO05D006163 0.0e+00 1270.8 765 79.0
Lsat_1_v5_gn_5_103081 Lactuca sativa HOM05D004541 ORTHO05D006163 0.0e+00 1269.6 770 79.5
C03p11140 Brassica napus HOM05D004541 ORTHO05D006163 0.0e+00 1269.2 765 79.3
CARHR193250 Cardamine hirsuta HOM05D004541 ORTHO05D006163 0.0e+00 1268.8 770 79.5
AT5G19660 Arabidopsis thaliana HOM05D004541 ORTHO05D006163 0.0e+00 1268.4 765 78.8
Hund26211 Selenicereus undatus HOM05D004541 ORTHO05D006163 0.0e+00 1264.6 773 78.7
Gohir.D05G025100 Gossypium hirsutum HOM05D004541 ORTHO05D006163 0.0e+00 1261.5 768 79.0
PSO210G2419 Papaver somniferum HOM05D004541 ORTHO05D006163 0.0e+00 1258.8 776 77.1
AUR62010981 Chenopodium quinoa HOM05D004541 ORTHO05D006163 0.0e+00 1257.7 738 80.5
Aa31LG3G3200 Aethionema arabicum HOM05D004541 ORTHO05D006163 0.0e+00 1256.9 754 79.0
BraA03t10274Z Brassica rapa HOM05D004541 ORTHO05D006163 0.0e+00 1256.5 788 77.2
PSO210G5975 Papaver somniferum HOM05D004541 ORTHO05D006163 0.0e+00 1253.4 776 76.7
SGA_v2.0_scaffold17G08177 Striga asiatica HOM05D004541 ORTHO05D006163 0.0e+00 1250.3 718 81.8
MBI01_g28040_MAGBIO Magnolia biondii HOM05D004541 ORTHO05D006163 0.0e+00 1250.0 747 79.4
EL10Ac8g18481 Beta vulgaris HOM05D004541 ORTHO05D006163 0.0e+00 1249.2 735 80.1
BcaB01g04837 Brassica carinata HOM05D004541 ORTHO05D006163 0.0e+00 1248.4 765 79.0
Duzib168G0462 Durio zibethinus HOM05D004541 ORTHO05D006163 0.0e+00 1245.7 722 81.7
MD02G1045500 Malus domestica HOM05D004541 ORTHO05D006163 0.0e+00 1239.6 714 81.7
Sopen00g009260 Solanum pennellii HOM05D004541 ORTHO05D006163 0.0e+00 1236.5 642 93.0
Sc18g0001290 Simmondsia chinensis HOM05D004541 ORTHO05D006163 0.0e+00 1234.2 717 80.2
FAN26G2455 Fragaria x ananassa HOM05D004541 ORTHO05D006163 0.0e+00 1232.2 718 81.3
Nn8g39153 Nelumbo nucifera HOM05D004541 ORTHO05D006163 0.0e+00 1216.4 781 75.3
SHI02736 Sapria himalayana HOM05D004541 ORTHO05D006163 0.0e+00 1213.4 750 76.0
Gohir.D05G025033 Gossypium hirsutum HOM05D004541 ORTHO05D006163 0.0e+00 1209.5 786 75.2
AUR62021490 Chenopodium quinoa HOM05D004541 ORTHO05D006163 0.0e+00 1208.7 768 75.9
CAN.G933.11 Capsicum annuum HOM05D004541 ORTHO05D006163 0.0e+00 1205.7 764 77.4
VMungo0464G1847 Vigna mungo HOM05D004541 ORTHO05D006163 0.0e+00 1204.9 769 75.9
Dinv36641 Davidia involucrata HOM05D004541 ORTHO05D006163 0.0e+00 1203.3 722 81.3
CDE05G1732 Ceratophyllum demersum HOM05D004541 ORTHO05D006163 0.0e+00 1172.1 771 71.6
HPP92_003938 Vanilla planifolia HOM05D004541 ORTHO05D006163 0.0e+00 1146.0 687 77.9
ATR0315G070 Amborella trichopoda HOM05D004541 ORTHO05D006163 0.0e+00 1145.2 694 77.5
Cpa.g.sc23.98 Carica papaya HOM05D004541 ORTHO05D006163 0.0e+00 1141.3 774 71.8
Ah.14g082120 Amaranthus hybridus HOM05D004541 ORTHO05D006163 0.0e+00 1137.5 713 77.3
Lsat_1_v5_gn_8_105101 Lactuca sativa HOM05D004541 ORTHO05D006163 0.0e+00 1090.9 717 71.5
Haze_25754 Corylus avellana HOM05D004541 ORTHO05D006163 0.0e+00 1078.5 654 80.0
Mapoly0155s0018 Marchantia polymorpha HOM05D004541 ORTHO05D006163 1.8e-297 1025.8 664 73.2
SMO347G0168 Selaginella moellendorffii HOM05D004541 ORTHO05D006163 2.2e-287 992.3 649 70.6
Pp3c3_30280 Physcomitrium patens HOM05D004541 ORTHO05D006163 7.8e-277 957.2 770 62.1
Os06g0163500 Oryza sativa ssp. japonica HOM05D004541 ORTHO05D006163 1.5e-267 926.4 686 64.0
CSS0043571 Camellia sinensis var. sinensis HOM05D004541 ORTHO05D006163 3.7e-263 911.8 663 69.5
Nitab4.5_0006929g0020 Nicotiana tabacum HOM05D004541 ORTHO05D006163 2.6e-256 889.0 681 66.8
AagrBONN_evm.TU.Sc2ySwM_344.4490 Anthoceros agrestis HOM05D004541 ORTHO05D006163 8.3e-255 884.0 539 75.1
SEGI_28317 Sequoiadendron giganteum HOM05D004541 ORTHO05D006163 1.3e-247 860.1 555 73.3
SEGI_41546 Sequoiadendron giganteum HOM05D004541 ORTHO05D006163 6.6e-236 821.2 466 82.4
MCO08G100 Micromonas commoda HOM05D004541 ORTHO05D006163 9.6e-227 790.8 706 55.8
Zm00001eb375700 Zea mays HOM05D004541 ORTHO05D006163 5.1e-220 768.5 601 61.4
Cre14.g628800 Chlamydomonas reinhardtii HOM05D004541 ORTHO05D006163 5.8e-216 755.0 605 58.8
PRCOL_00005929 Prasinoderma coloniale HOM05D004541 ORTHO05D006163 4.3e-211 738.8 661 54.8
PGSC0003DMG400017594 Solanum tuberosum HOM05D004541 ORTHO05D006163 1.6e-210 736.9 524 71.0
CAN.G268.4 Capsicum annuum HOM05D004541 ORTHO05D006163 9.7e-203 711.1 511 71.0
Medtr6g086780 Medicago truncatula HOM05D004541 ORTHO05D006163 1.1e-182 644.4 489 66.1
Gorai.006G096000 Gossypium raimondii HOM05D004541 ORTHO05D006163 1.8e-87 328.2 173 91.3
Nitab4.5_0000754g0080 Nicotiana tabacum HOM05D004541 ORTHO05D006163 1.1e-84 318.9 628 36.8
Gohir.A08G250201 Gossypium hirsutum HOM05D004541 ORTHO05D006163 2.4e-84 317.8 163 93.9
Gohir.D07G157100 Gossypium hirsutum HOM05D004541 ORTHO05D006163 2.4e-84 317.8 163 93.9
Gohir.D09G033000 Gossypium hirsutum HOM05D004541 ORTHO05D006163 2.4e-84 317.8 163 93.9
CBR_g30873 Chara braunii HOM05D004541 ORTHO05D000800 4.1e-84 317.0 218 75.2
Gohir.A06G119402 Gossypium hirsutum HOM05D004541 ORTHO05D006163 6.9e-84 316.2 163 93.3
Gohir.A12G025200 Gossypium hirsutum HOM05D004541 ORTHO05D006163 6.9e-84 316.2 163 93.3
Gohir.A10G147200 Gossypium hirsutum HOM05D004541 ORTHO05D006163 2.0e-83 314.7 163 93.3
Gohir.D04G083366 Gossypium hirsutum HOM05D004541 ORTHO05D006163 2.1e-80 304.7 153 96.1
SGA_v2.0_scaffold176G39378 Striga asiatica HOM05D004541 ORTHO05D006163 3.8e-66 257.3 215 61.4
Sopen00g009180 Solanum pennellii HOM05D004541 ORTHO05D006163 4.0e-55 220.7 108 96.3
MBI04_g39576_MAGBIO Magnolia biondii HOM05D004541 ORTHO05D006163 1.2e-46 192.6 124 74.2
BolC9t58517H Brassica oleracea HOM05D004541 ORTHO05D006163 1.3e-45 189.1 143 65.0
CBR_g30877 Chara braunii HOM05D004541 ORTHO05D000002 1.4e-44 185.7 126 63.5
Haze_25737 Corylus avellana HOM05D004541 ORTHO05D006163 3.3e-41 174.5 149 62.4
C09p56520 Brassica napus HOM05D004541 ORTHO05D006163 2.1e-40 171.8 129 65.9
BcaC04g19361 Brassica carinata HOM05D002433 ORTHO05D003234 4.4e-38 164.1 125 65.6
Lsat_1_v5_gn_5_96741 Lactuca sativa HOM05D004541 ORTHO05D006163 6.0e-35 153.7 100 76.0
Haze_25735 Corylus avellana HOM05D004541 ORTHO05D006163 8.9e-31 139.8 86 74.4
CSS0008653 Camellia sinensis var. sinensis HOM05D000916 ORTHO05D001797 1.5e-30 139.0 73 89.0
CBR_g30889 Chara braunii HOM05D001523 ORTHO05D000184 2.0e-30 138.7 144 47.9
CSS0038393 Camellia sinensis var. sinensis HOM05D000916 ORTHO05D001797 4.4e-30 137.5 73 87.7
CSS0024771 Camellia sinensis var. sinensis HOM05D004541 ORTHO05D001797 1.3e-29 136.0 76 85.5
SEGI_08862 Sequoiadendron giganteum HOM05D004541 ORTHO05D006163 1.7e-29 135.6 237 35.4
Actinidia32680 Actinidia chinensis HOM05D004541 ORTHO05D006163 6.0e-27 127.1 74 85.1
CSS0002864 Camellia sinensis var. sinensis HOM05D000916 ORTHO05D001797 7.3e-25 120.2 57 98.2
Ah.14g082140 Amaranthus hybridus HOM05D004541 ORTHO05D006163 3.1e-15 88.2 45 91.1
Lj3g0016708 Lotus japonicus HOM05D004541 ORTHO05D006163 1.5e-14 85.9 45 88.9
Pp3s169_40 Physcomitrium patens HOM05D004541 ORTHO05D012764 1.5e-09 69.3 165 30.9
Aa31LG3G3160 Aethionema arabicum HOM05D004541 ORTHO05D058835 2.5e-09 68.6 162 34.0
CBR_g30886 Chara braunii HOM05D000019 ORTHO05D000353 1.4e-07 62.8 34 73.5
MSTRG.26979 Avicennia marina HOM05D000015 ORTHO05D001173 2.0e-06 58.9 94 40.4
Ciclev10018942m.g Citrus clementina HOM05D000015 ORTHO05D001173 2.0e-06 58.9 138 36.2
FvH4_5g10480 Fragaria vesca HOM05D000015 ORTHO05D001173 2.6e-06 58.5 179 32.4
SMO198G0046 Selaginella moellendorffii HOM05D000015 ORTHO05D375385 4.5e-06 57.8 155 32.9
Haze_15385 Corylus avellana HOM05D000015 ORTHO05D000734 5.8e-06 57.4 82 39.0
Os02g0269600 Oryza sativa ssp. japonica HOM05D000015 ORTHO05D001173 5.8e-06 57.4 138 34.8


User provided reference genes

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