Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0007541g0020 Nicotiana tabacum HOM05D005613 ORTHO05D006903 8.2e-168 593.6 285 100.0
Nitab4.5_0011040g0030 Nicotiana tabacum HOM05D005613 ORTHO05D006903 1.5e-166 589.3 285 99.3
CAN.G767.35 Capsicum annuum HOM05D005613 ORTHO05D006903 7.6e-158 560.5 285 93.0
Peaxi162Scf00378g00519 Petunia axillaris HOM05D005613 ORTHO05D006903 3.0e-154 548.5 283 91.2
Sopen12g033400 Solanum pennellii HOM05D005613 ORTHO05D006903 8.8e-154 547.0 287 90.6
Solyc12g098640.3 Solanum lycopersicum HOM05D005613 ORTHO05D006903 4.3e-153 544.7 287 89.9
PGSC0003DMG400004674 Solanum tuberosum HOM05D005613 ORTHO05D006903 6.3e-152 540.8 282 91.1
Dinv11157 Davidia involucrata HOM05D005613 ORTHO05D006903 2.7e-139 498.8 282 81.6
MSTRG.17588 Avicennia marina HOM05D005613 ORTHO05D006903 2.6e-137 492.3 282 79.8
RcHm_v2.0_Chr7g0190451 Rosa chinensis HOM05D005613 ORTHO05D006903 5.7e-137 491.1 283 79.5
Cc00_g03610 Coffea canephora HOM05D005613 ORTHO05D006903 1.7e-136 489.6 273 81.7
Migut.N02308 Erythranthe guttata HOM05D005613 ORTHO05D006903 2.2e-136 489.2 285 77.9
PGR044G0561 Punica granatum HOM05D005613 ORTHO05D006903 2.2e-136 489.2 283 80.6
CSS0000406 Camellia sinensis var. sinensis HOM05D005613 ORTHO05D006903 2.8e-136 488.8 280 79.6
Cc07_g17610 Coffea canephora HOM05D005613 ORTHO05D006903 2.8e-136 488.8 271 82.7
THA.LOC104803145 Tarenaya hassleriana HOM05D005613 ORTHO05D006903 2.4e-135 485.7 283 79.2
CANSAT80G2472 Cannabis sativa HOM05D005613 ORTHO05D006903 3.1e-135 485.3 282 78.7
FvH4_5g07950 Fragaria vesca HOM05D005613 ORTHO05D006903 3.1e-135 485.3 282 78.0
Glyma.04G194500 Glycine max HOM05D005613 ORTHO05D006903 4.1e-135 485.0 275 81.5
Glyma.06G171500 Glycine max HOM05D005613 ORTHO05D006903 7.0e-135 484.2 276 81.5
TWI39G1237 Tripterygium wilfordii HOM05D005613 ORTHO05D006903 7.0e-135 484.2 282 78.4
Manes.06G118100 Manihot esculenta HOM05D005613 ORTHO05D006903 1.2e-134 483.4 282 78.0
Actinidia15836 Actinidia chinensis HOM05D005613 ORTHO05D006903 2.0e-134 482.6 282 77.7
SalBow7G2516 Salvia bowleyana HOM05D005613 ORTHO05D006903 2.0e-134 482.6 288 77.1
Manes.14G052800 Manihot esculenta HOM05D005613 ORTHO05D006903 2.6e-134 482.3 282 78.7
Thecc.03G126700 Theobroma cacao HOM05D005613 ORTHO05D006903 2.6e-134 482.3 283 78.1
TAR371G0420 Trochodendron aralioides HOM05D005613 ORTHO05D006903 2.6e-134 482.3 283 78.4
MD14G1159000 Malus domestica HOM05D005613 ORTHO05D006903 5.9e-134 481.1 282 78.4
Phvul.009G167500 Phaseolus vulgaris HOM05D005613 ORTHO05D006903 1.0e-133 480.3 279 81.0
TWI23G0755 Tripterygium wilfordii HOM05D005613 ORTHO05D006903 1.0e-133 480.3 282 77.3
Prupe.5G152900 Prunus persica HOM05D005613 ORTHO05D006903 1.3e-133 479.9 274 81.0
Medtr3g089010 Medicago truncatula HOM05D005613 ORTHO05D006903 2.9e-133 478.8 283 78.8
CiPaw.11G009100 Carya illinoinensis HOM05D005613 ORTHO05D006903 3.8e-133 478.4 287 78.0
Aa31LG3G6910 Aethionema arabicum HOM05D005613 ORTHO05D006903 8.5e-133 477.2 270 80.0
Duzib205G1234 Durio zibethinus HOM05D005613 ORTHO05D006903 1.1e-132 476.9 282 79.1
MD06G1143700 Malus domestica HOM05D005613 ORTHO05D006903 1.9e-132 476.1 282 77.7
Eucgr.K02737 Eucalyptus grandis HOM05D005613 ORTHO05D006903 2.5e-132 475.7 273 79.9
Gohir.D07G056300 Gossypium hirsutum HOM05D005613 ORTHO05D006903 2.5e-132 475.7 283 78.1
Gorai.001G059700 Gossypium raimondii HOM05D005613 ORTHO05D006903 2.5e-132 475.7 283 78.1
Gohir.A07G051800 Gossypium hirsutum HOM05D005613 ORTHO05D006903 3.2e-132 475.3 283 78.4
Lj1g0013310 Lotus japonicus HOM05D005613 ORTHO05D006903 3.2e-132 475.3 276 79.3
QL10p004130 Quercus lobata HOM05D005613 ORTHO05D006903 5.5e-132 474.6 288 76.7
Aqoxy5G04126 Aquilegia oxysepala HOM05D005613 ORTHO05D006903 7.2e-132 474.2 279 79.2
Lsat_1_v5_gn_4_76740 Lactuca sativa HOM05D005613 ORTHO05D006903 9.4e-132 473.8 283 78.4
MELO3C002354.2 Cucumis melo HOM05D005613 ORTHO05D006903 1.2e-131 473.4 281 77.6
GSVIVG01008514001 Vitis vinifera HOM05D005613 ORTHO05D006903 1.2e-131 473.4 282 78.7
TPR.G26132 Trifolium pratense HOM05D005613 ORTHO05D006903 1.6e-131 473.0 302 74.5
Ciclev10021465m.g Citrus clementina HOM05D005613 ORTHO05D006903 2.1e-131 472.6 284 77.8
Potri.015G093500 Populus trichocarpa HOM05D005613 ORTHO05D006903 2.1e-131 472.6 285 76.5
QL10p004191 Quercus lobata HOM05D005613 ORTHO05D006903 2.1e-131 472.6 288 76.4
CARHR258110 Cardamine hirsuta HOM05D005613 ORTHO05D006903 2.7e-131 472.2 278 77.0
Carub.0008s1047 Capsella rubella HOM05D005613 ORTHO05D006903 4.7e-131 471.5 276 77.5
CsaV3_1G009570 Cucumis sativus L. HOM05D005613 ORTHO05D006903 4.7e-131 471.5 281 77.6
Lalb_Chr11g0069651 Lupinus albus HOM05D005613 ORTHO05D006903 6.1e-131 471.1 275 78.2
BcaC01g04807 Brassica carinata HOM05D005613 ORTHO05D006903 1.0e-130 470.3 276 77.5
Psat5g169720 Pisum sativum HOM05D005613 ORTHO05D006903 1.0e-130 470.3 276 78.6
AT5G50375 Arabidopsis thaliana HOM05D005613 ORTHO05D006903 1.4e-130 469.9 276 77.5
C03p33570 Brassica napus HOM05D005613 ORTHO05D006903 1.8e-130 469.5 278 77.0
BcaB01g02892 Brassica carinata HOM05D005613 ORTHO05D006903 4.0e-130 468.4 276 77.5
AL8G24500 Arabidopsis lyrata HOM05D005613 ORTHO05D006903 8.8e-130 467.2 278 76.3
BolC3t15677H Brassica oleracea HOM05D005613 ORTHO05D006903 8.8e-130 467.2 284 75.4
A03p27830 Brassica napus HOM05D005613 ORTHO05D006903 1.5e-129 466.5 283 75.3
Thhalv10014300m.g Eutrema salsugineum HOM05D005613 ORTHO05D006903 2.0e-129 466.1 272 77.6
BraA03t11994Z Brassica rapa HOM05D005613 ORTHO05D006903 3.3e-129 465.3 289 73.7
PSO017G3077 Papaver somniferum HOM05D005613 ORTHO05D006903 3.3e-129 465.3 279 76.7
ECA232G4063 Erigeron canadensis HOM05D005613 ORTHO05D006903 4.4e-129 464.9 281 75.8
SpUn0050_0040 Schrenkiella parvula HOM05D005613 ORTHO05D006903 1.3e-128 463.4 283 75.6
Hund02427 Selenicereus undatus HOM05D005613 ORTHO05D006903 1.3e-128 463.4 290 73.8
Haze_07235 Corylus avellana HOM05D005613 ORTHO05D006903 1.7e-128 463.0 315 69.5
arahy.Tifrunner.gnm1.ann1.91S2FI Arachis hypogaea HOM05D005613 ORTHO05D006903 2.2e-128 462.6 301 72.4
HanXRQChr09g0273061 Helianthus annuus HOM05D005613 ORTHO05D006903 4.8e-128 461.5 285 75.8
PSO017G2706 Papaver somniferum HOM05D005613 ORTHO05D006903 6.3e-128 461.1 287 74.9
VMungo1309G0937 Vigna mungo HOM05D005613 ORTHO05D006903 6.3e-128 461.1 265 80.8
ClCG03G003690 Citrullus lanatus HOM05D005613 ORTHO05D006903 1.4e-127 459.9 323 67.5
PSO675G0985 Papaver somniferum HOM05D005613 ORTHO05D006903 1.4e-127 459.9 279 76.0
Sed0021273 Sechium edule HOM05D005613 ORTHO05D006903 2.4e-127 459.1 271 78.6
PSO478G0845 Papaver somniferum HOM05D005613 ORTHO05D006903 3.1e-127 458.8 276 76.1
EL10Ac5g11023 Beta vulgaris HOM05D005613 ORTHO05D006903 5.3e-127 458.0 275 75.3
Lj9C477T8 Lonicera japonica HOM05D005613 ORTHO05D006903 7.0e-127 457.6 282 76.2
FAN13G2894 Fragaria x ananassa HOM05D005613 ORTHO05D006903 9.1e-127 457.2 282 74.8
BcaB08g35134 Brassica carinata HOM05D005613 ORTHO05D006903 1.6e-126 456.4 270 75.6
BolC8t51467H Brassica oleracea HOM05D005613 ORTHO05D006903 7.7e-126 454.1 270 75.6
AUR62032039 Chenopodium quinoa HOM05D005613 ORTHO05D006903 1.0e-125 453.8 280 74.3
C08p38940 Brassica napus HOM05D005613 ORTHO05D006903 2.2e-125 452.6 270 75.2
Rhsim08G0188600 Rhododendron simsii HOM05D005613 ORTHO05D006903 3.8e-125 451.8 274 75.9
BraA09t40998Z Brassica rapa HOM05D005613 ORTHO05D006903 1.9e-124 449.5 274 74.1
A09p55960 Brassica napus HOM05D005613 ORTHO05D006903 2.5e-124 449.1 285 72.3
FAN18G4059 Fragaria x ananassa HOM05D005613 ORTHO05D006903 2.5e-124 449.1 322 65.8
Sed0001462 Sechium edule HOM05D005613 ORTHO05D006903 4.2e-124 448.4 276 75.4
DCAR_021614 Daucus carota HOM05D005613 ORTHO05D006903 9.4e-124 447.2 274 74.1
DCAR_016405 Daucus carota HOM05D005613 ORTHO05D006903 1.2e-123 446.8 274 74.5
Actinidia25589 Actinidia chinensis HOM05D005613 ORTHO05D006903 8.0e-123 444.1 252 79.8
arahy.Tifrunner.gnm1.ann1.AY81KB Arachis hypogaea HOM05D005613 ORTHO05D006903 8.0e-123 444.1 278 75.2
unitig_27.g24986 Utricularia gibba HOM05D005613 ORTHO05D006903 4.0e-122 441.8 282 71.3
Zm00001eb265520 Zea mays HOM05D005613 ORTHO05D006903 3.1e-119 432.2 271 74.5
Sabra15G0115100 Salix brachista HOM05D005613 ORTHO05D006903 7.0e-119 431.0 304 68.1
SEGI_09495 Sequoiadendron giganteum HOM05D005613 ORTHO05D006903 4.5e-118 428.3 277 71.8
Dinv04871 Davidia involucrata HOM05D005613 ORTHO05D006903 4.2e-116 421.8 284 71.5
BcaC07g40897 Brassica carinata HOM05D005613 ORTHO05D006903 9.5e-116 420.6 276 71.0
FAN08G1682 Fragaria x ananassa HOM05D005613 ORTHO05D006903 2.1e-115 419.5 308 65.9
unitig_699.g19129 Utricularia gibba HOM05D005613 ORTHO05D006903 2.1e-115 419.5 274 70.4
CDE02G3999 Ceratophyllum demersum HOM05D005613 ORTHO05D006903 4.7e-115 418.3 276 69.9
Nn4g22373 Nelumbo nucifera HOM05D005613 ORTHO05D006903 6.1e-115 417.9 283 70.3
ATR0680G053 Amborella trichopoda HOM05D005613 ORTHO05D006903 3.4e-113 412.1 273 70.0
vmacro19214 Vaccinium macrocarpon HOM05D005613 ORTHO05D006903 1.4e-111 406.8 367 56.9
arahy.Tifrunner.gnm1.ann1.LN4RIT Arachis hypogaea HOM05D005613 ORTHO05D006903 1.9e-108 396.4 235 77.4
BcaB05g24059 Brassica carinata HOM05D005613 ORTHO05D006903 7.5e-105 384.4 294 63.6
COL.COLO4_28085 Corchorus olitorius HOM05D005613 ORTHO05D006903 6.0e-102 374.8 219 78.1
Cpa.g.sc13.142 Carica papaya HOM05D005613 ORTHO05D006903 3.0e-101 372.5 226 75.2
AUR62036512 Chenopodium quinoa HOM05D005613 ORTHO05D006903 1.5e-100 370.2 239 71.1
CDE09G1331 Ceratophyllum demersum HOM05D005613 ORTHO05D006903 3.1e-98 362.5 276 63.0
SpUn0508_0010 Schrenkiella parvula HOM05D005613 ORTHO05D006903 1.4e-95 353.6 211 76.3
SMO180G0005 Selaginella moellendorffii HOM05D005613 ORTHO05D006903 3.2e-95 352.4 278 58.3
Aqoxy22s001 Aquilegia oxysepala HOM05D005613 ORTHO05D006903 2.1e-94 349.7 197 81.7
CiPaw.12G041000 Carya illinoinensis HOM05D005613 ORTHO05D006903 1.3e-93 347.1 190 83.7
Pp3c14_22450 Physcomitrium patens HOM05D005613 ORTHO05D006903 4.7e-91 338.6 277 59.6
Mapoly0019s0004 Marchantia polymorpha HOM05D005613 ORTHO05D006903 1.8e-90 336.7 284 57.0
SHI39270 Sapria himalayana HOM05D005613 ORTHO05D006903 7.8e-86 321.2 189 79.4
SHI42710 Sapria himalayana HOM05D005613 ORTHO05D006903 7.8e-86 321.2 189 79.4
Aqoxy1G01617 Aquilegia oxysepala HOM05D005613 ORTHO05D006903 8.6e-85 317.8 223 70.4
AUR62032713 Chenopodium quinoa HOM05D005613 ORTHO05D006903 3.3e-76 289.3 227 61.7
AagrBONN_evm.TU.Sc2ySwM_362.2466 Anthoceros agrestis HOM05D005613 ORTHO05D006903 1.2e-73 280.8 226 59.7
SGA_v2.0_scaffold42G16110 Striga asiatica HOM05D005613 ORTHO05D006903 1.3e-72 277.3 302 52.3
Cre16.g657300 Chlamydomonas reinhardtii HOM05D005613 ORTHO05D006903 1.4e-71 273.9 271 50.6
SGA_v2.0_scaffold115G32075 Striga asiatica HOM05D005613 ORTHO05D006903 1.7e-64 250.4 151 74.2
HPP92_006202 Vanilla planifolia HOM05D005613 ORTHO05D006903 1.7e-64 250.4 158 74.1
AagrBONN_evm.TU.Sc2ySwM_117.1130 Anthoceros agrestis HOM05D005613 ORTHO05D006903 8.7e-61 238.0 183 60.7
SMO353G0009 Selaginella moellendorffii HOM05D005613 ORTHO05D006903 5.8e-57 225.3 261 47.5
CBR_g48821 Chara braunii HOM05D005613 ORTHO05D006903 1.3e-56 224.2 213 50.2
Ah.11g044830 Amaranthus hybridus HOM05D006563 ORTHO05D008154 1.3e-53 214.2 131 73.3
SGA_v2.0_scaffold115G32072 Striga asiatica HOM05D000001 ORTHO05D000003 7.1e-47 191.8 237 46.8
HPP92_006201 Vanilla planifolia HOM05D005613 ORTHO05D006903 1.6e-38 164.1 106 69.8
MCO03G530 Micromonas commoda HOM05D005613 ORTHO05D006903 2.0e-36 157.1 211 40.3
PRCOL_00007276 Prasinoderma coloniale HOM05D005613 ORTHO05D006903 9.7e-36 154.8 272 37.1
SGA_v2.0_scaffold3G01513 Striga asiatica HOM05D005613 ORTHO05D006903 4.1e-34 149.4 111 63.1
Os11g0302500 Oryza sativa ssp. japonica HOM05D005613 ORTHO05D006903 8.2e-27 125.2 83 66.3
CBR_g48823 Chara braunii HOM05D005613 ORTHO05D006903 8.5e-16 88.6 67 58.2
SEGI_05867 Sequoiadendron giganteum HOM05D005613 ORTHO05D006903 3.2e-15 86.7 44 81.8
arahy.Tifrunner.gnm1.ann1.W1BQBA Arachis hypogaea HOM05D005613 ORTHO05D006903 1.1e-10 71.6 42 66.7


User provided reference genes

Program Settings