Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0007540g0040 Nicotiana tabacum HOM05D007531 ORTHO05D009484 6.4e-52 207.2 111 100.0
Nitab4.5_0001699g0060 Nicotiana tabacum HOM05D007531 ORTHO05D009484 1.5e-48 196.1 111 94.6
Sopen07g022090 Solanum pennellii HOM05D007531 ORTHO05D009484 4.2e-35 151.4 99 82.8
Solyc07g042450.3 Solanum lycopersicum HOM05D007531 ORTHO05D009484 1.2e-34 149.8 99 81.8
Nitab4.5_0001092g0060 Nicotiana tabacum HOM05D007531 ORTHO05D009484 3.3e-32 141.7 98 75.5
PGSC0003DMG400013576 Solanum tuberosum HOM05D007531 ORTHO05D009484 4.3e-32 141.4 101 78.2
Peaxi162Scf00191g01018 Petunia axillaris HOM05D007531 ORTHO05D009484 1.3e-31 139.8 101 77.2
CAN.G660.22 Capsicum annuum HOM05D007531 ORTHO05D009484 4.8e-31 137.9 101 75.2
Oeu028116.1 Olea europaea HOM05D007531 ORTHO05D009484 3.9e-25 118.2 101 68.3
Dinv42427 Davidia involucrata HOM05D007531 ORTHO05D009484 6.7e-25 117.5 98 62.2
MSTRG.19432 Avicennia marina HOM05D007531 ORTHO05D009484 2.8e-23 112.1 104 69.2
CSS0023587 Camellia sinensis var. sinensis HOM05D007531 ORTHO05D009484 3.7e-23 111.7 98 63.3
Migut.L01591 Erythranthe guttata HOM05D007531 ORTHO05D009484 6.9e-22 107.5 108 59.3
SGA_v2.0_scaffold296G47570 Striga asiatica HOM05D007531 ORTHO05D009484 4.5e-21 104.8 109 56.9
Duzib168G1872 Durio zibethinus HOM05D007531 ORTHO05D009484 1.7e-20 102.8 98 59.2
Dinv25515 Davidia involucrata HOM05D007531 ORTHO05D009484 2.2e-20 102.4 93 63.4
GSVIVG01015026001 Vitis vinifera HOM05D007531 ORTHO05D009484 2.9e-20 102.1 98 61.2
SalBow6G4078 Salvia bowleyana HOM05D007531 ORTHO05D009484 4.9e-20 101.3 107 56.1
Thecc.09G071300 Theobroma cacao HOM05D007531 ORTHO05D009484 6.5e-20 100.9 99 58.6
CANSAT56G3767 Cannabis sativa HOM05D007531 ORTHO05D009484 1.9e-19 99.4 98 58.2
Prupe.7G193100 Prunus persica HOM05D007531 ORTHO05D009484 1.6e-18 96.3 101 54.5
MD15G1222700 Malus domestica HOM05D007531 ORTHO05D009484 2.1e-18 95.9 98 56.1
Sc14g0000480 Simmondsia chinensis HOM05D007531 ORTHO05D009484 2.1e-18 95.9 98 58.2
Actinidia39623 Actinidia chinensis HOM05D007531 ORTHO05D009484 2.7e-18 95.5 98 57.1
Potri.006G137401 Populus trichocarpa HOM05D007531 ORTHO05D009484 4.6e-18 94.7 98 57.1
TWI63G1700 Tripterygium wilfordii HOM05D007531 ORTHO05D009484 4.6e-18 94.7 101 56.4
Cc06_g12620 Coffea canephora HOM05D007531 ORTHO05D009484 6.0e-18 94.4 111 55.0
Cpa.g.sc82.75 Carica papaya HOM05D007531 ORTHO05D009484 2.3e-17 92.4 101 55.4
Duzib150G1567 Durio zibethinus HOM05D007531 ORTHO05D009484 8.7e-17 90.5 103 57.3
Hma1.2p1_0519F.1_g171380 Hydrangea macrophylla HOM05D007531 ORTHO05D009484 1.1e-16 90.1 103 55.3
Manes.03G043400 Manihot esculenta HOM05D007531 ORTHO05D009484 1.5e-16 89.7 98 57.1
Manes.16G092000 Manihot esculenta HOM05D007531 ORTHO05D009484 1.5e-16 89.7 66 68.2
Gorai.004G285500 Gossypium raimondii HOM05D007531 ORTHO05D009484 1.9e-16 89.4 101 53.5
Rhsim05G0002900 Rhododendron simsii HOM05D007531 ORTHO05D009484 1.9e-16 89.4 100 52.0
THA.LOC104809045 Tarenaya hassleriana HOM05D007531 ORTHO05D009484 2.5e-16 89.0 100 54.0
TAR626G0337 Trochodendron aralioides HOM05D007531 ORTHO05D009484 3.3e-16 88.6 98 52.0
COL.COLO4_21218 Corchorus olitorius HOM05D007531 ORTHO05D009484 4.3e-16 88.2 105 51.4
Gohir.A08G246700 Gossypium hirsutum HOM05D007531 ORTHO05D009484 4.3e-16 88.2 101 53.5
Lsat_1_v5_gn_7_35440 Lactuca sativa HOM05D007531 ORTHO05D009484 4.3e-16 88.2 98 48.0
ClCG11G000070 Citrullus lanatus HOM05D007531 ORTHO05D009484 9.7e-16 87.0 61 72.1
Carub.0001s1884 Capsella rubella HOM05D007531 ORTHO05D009484 1.3e-15 86.7 104 53.8
AL1G31820 Arabidopsis lyrata HOM05D007531 ORTHO05D009484 1.6e-15 86.3 103 51.5
ECA246G1013 Erigeron canadensis HOM05D007531 ORTHO05D009484 1.6e-15 86.3 65 64.6
Gohir.D08G267900 Gossypium hirsutum HOM05D007531 ORTHO05D009484 1.6e-15 86.3 101 52.5
PGR042G0735 Punica granatum HOM05D007531 ORTHO05D009484 4.8e-15 84.7 100 53.0
unitig_578.g16405 Utricularia gibba HOM05D007531 ORTHO05D009484 4.8e-15 84.7 101 51.5
Aa31LG7G3950 Aethionema arabicum HOM05D007531 ORTHO05D009484 6.3e-15 84.3 100 51.0
DCAR_010491 Daucus carota HOM05D007531 ORTHO05D009484 6.3e-15 84.3 98 50.0
RcHm_v2.0_Chr2g0095821 Rosa chinensis HOM05D007531 ORTHO05D009484 6.3e-15 84.3 66 59.1
Atru.chr7.1757 Acer truncatum HOM05D007531 ORTHO05D009484 1.8e-14 82.8 101 52.5
CsaV3_5G027570 Cucumis sativus L. HOM05D007531 ORTHO05D009484 2.4e-14 82.4 82 61.0
BcaB07g31940 Brassica carinata HOM05D007531 ORTHO05D009484 5.3e-14 81.3 101 48.5
BcaC07g38992 Brassica carinata HOM05D007531 ORTHO05D009484 5.3e-14 81.3 101 48.5
EL10Ac8g18992 Beta vulgaris HOM05D007531 ORTHO05D009484 6.9e-14 80.9 98 51.0
Cfa002948 Carpinus fangiana HOM05D007531 ORTHO05D009484 6.9e-14 80.9 105 51.4
QL11p002692 Quercus lobata HOM05D007531 ORTHO05D009484 6.9e-14 80.9 101 52.5
Sp1g17150 Schrenkiella parvula HOM05D007531 ORTHO05D009484 6.9e-14 80.9 101 48.5
arahy.Tifrunner.gnm1.ann1.ETL5CI Arachis hypogaea HOM05D007531 ORTHO05D009484 1.2e-13 80.1 53 71.7
arahy.Tifrunner.gnm1.ann1.J82KAY Arachis hypogaea HOM05D007531 ORTHO05D009484 1.2e-13 80.1 53 71.7
CDE06G0851 Ceratophyllum demersum HOM05D007531 ORTHO05D009484 1.2e-13 80.1 87 56.3
Eucgr.H05011 Eucalyptus grandis HOM05D007531 ORTHO05D009484 1.2e-13 80.1 111 45.0
AT1G19240 Arabidopsis thaliana HOM05D007531 ORTHO05D009484 1.5e-13 79.7 105 49.5
FAN26G1659 Fragaria x ananassa HOM05D007531 ORTHO05D009484 1.5e-13 79.7 104 46.2
FAN26G1806 Fragaria x ananassa HOM05D007531 ORTHO05D009484 1.5e-13 79.7 104 46.2
Lj4g0024105 Lotus japonicus HOM05D007531 ORTHO05D009484 1.5e-13 79.7 74 56.8
Thhalv10009175m.g Eutrema salsugineum HOM05D007531 ORTHO05D009484 2.0e-13 79.3 102 49.0
TPR.G12718 Trifolium pratense HOM05D007531 ORTHO05D009484 5.9e-13 77.8 67 61.2
vmacro17085 Vaccinium macrocarpon HOM05D007531 ORTHO05D009484 7.6e-13 77.4 67 61.2
FvH4_1g09260 Fragaria vesca HOM05D007531 ORTHO05D009484 1.3e-12 76.6 103 43.7
FAN19G1112 Fragaria x ananassa HOM05D007531 ORTHO05D009484 1.3e-12 76.6 103 43.7
MBI19_g38003_MAGBIO Magnolia biondii HOM05D007531 ORTHO05D009484 1.7e-12 76.3 65 60.0
C05p17640 Brassica napus HOM05D007531 ORTHO05D009484 2.2e-12 75.9 58 65.5
BolC5t30467H Brassica oleracea HOM05D007531 ORTHO05D009484 2.2e-12 75.9 58 65.5
CARHR019840 Cardamine hirsuta HOM05D007531 ORTHO05D009484 2.9e-12 75.5 110 46.4
Medtr4g124770 Medicago truncatula HOM05D007531 ORTHO05D009484 2.9e-12 75.5 73 56.2
Phvul.004G046500 Phaseolus vulgaris HOM05D007531 ORTHO05D009484 2.9e-12 75.5 78 51.3
Sabra06G0107500 Salix brachista HOM05D007531 ORTHO05D009484 3.8e-12 75.1 43 76.7
HPP92_021129 Vanilla planifolia HOM05D007531 ORTHO05D009484 3.8e-12 75.1 98 43.9
A06p15390 Brassica napus HOM05D007531 ORTHO05D009484 5.0e-12 74.7 58 63.8
BraA06t24652Z Brassica rapa HOM05D007531 ORTHO05D009484 5.0e-12 74.7 58 63.8
FAN23G0531 Fragaria x ananassa HOM05D007531 ORTHO05D009484 5.0e-12 74.7 106 41.5
HPP92_021130 Vanilla planifolia HOM05D007531 ORTHO05D009484 6.5e-12 74.3 98 43.9
Aqoxy7G04136 Aquilegia oxysepala HOM05D007531 ORTHO05D009484 8.5e-12 73.9 98 45.9
Ciclev10010006m.g Citrus clementina HOM05D007531 ORTHO05D009484 2.5e-11 72.4 101 45.5
Psat0s2373g0160 Pisum sativum HOM05D007531 ORTHO05D009484 7.2e-11 70.9 63 58.7
Phvul.003G128000 Phaseolus vulgaris HOM05D007531 ORTHO05D009484 2.1e-10 69.3 75 53.3
Glyma.17G046400 Glycine max HOM05D007531 ORTHO05D009484 2.7e-10 68.9 78 50.0
Os01g0144700 Oryza sativa ssp. japonica HOM05D007531 ORTHO05D009484 2.7e-10 68.9 81 46.9
Sed0019513 Sechium edule HOM05D007531 ORTHO05D009484 4.6e-10 68.2 41 73.2
VMungo1215G2546 Vigna mungo HOM05D007531 ORTHO05D009484 1.0e-09 67.0 40 75.0
Glyma.13G113300 Glycine max HOM05D007531 ORTHO05D009484 3.0e-09 65.5 81 46.9
Lalb_Chr11g0074031 Lupinus albus HOM05D007531 ORTHO05D009484 5.1e-09 64.7 84 47.6
FAN28G0689 Fragaria x ananassa HOM05D007531 ORTHO05D009484 4.8e-07 58.2 104 40.4


User provided reference genes

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