Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0007535g0020 Nicotiana tabacum HOM05D003638 ORTHO05D003202 2.2e-55 218.8 113 100.0
Nitab4.5_0001021g0070 Nicotiana tabacum HOM05D003638 ORTHO05D003202 2.7e-50 201.8 113 93.8
PGSC0003DMG402030736 Solanum tuberosum HOM05D003638 ORTHO05D003202 5.9e-45 184.1 113 86.7
Sopen06g024020 Solanum pennellii HOM05D003638 ORTHO05D003202 1.2e-42 176.4 111 83.8
Sopen07g003220 Solanum pennellii HOM05D003638 ORTHO05D003202 2.1e-42 175.6 111 83.8
Solyc07g007170.3 Solanum lycopersicum HOM05D003638 ORTHO05D003202 8.0e-42 173.7 111 82.0
Peaxi162Scf00391g00019 Petunia axillaris HOM05D003638 ORTHO05D003202 4.0e-33 144.8 111 71.2
PGSC0003DMG401030736 Solanum tuberosum HOM05D003638 ORTHO05D003202 1.7e-31 139.4 96 76.0
Nitab4.5_0001555g0090 Nicotiana tabacum HOM05D003638 ORTHO05D003202 4.9e-31 137.9 98 75.5
Solyc07g007160.3 Solanum lycopersicum HOM05D003638 ORTHO05D003202 1.1e-30 136.7 106 67.9
Sopen07g003210 Solanum pennellii HOM05D003638 ORTHO05D003202 1.4e-30 136.3 106 67.9
Cc06_g07440 Coffea canephora HOM05D003638 ORTHO05D003202 2.0e-21 105.9 108 61.1
Nitab4.5_0001751g0040 Nicotiana tabacum HOM05D003638 ORTHO05D003202 2.0e-21 105.9 100 62.0
Peaxi162Scf00108g00110 Petunia axillaris HOM05D003638 ORTHO05D003202 3.5e-21 105.1 98 59.2
Manes.06G041300 Manihot esculenta HOM05D003638 ORTHO05D003202 7.8e-21 104.0 113 55.8
Nitab4.5_0001021g0080 Nicotiana tabacum HOM05D003638 ORTHO05D003202 7.8e-21 104.0 83 71.1
Dinv41427 Davidia involucrata HOM05D003638 ORTHO05D003202 3.3e-19 98.6 101 60.4
Duzib168G1473 Durio zibethinus HOM05D003638 ORTHO05D003202 3.3e-19 98.6 96 59.4
ClCG02G017240 Citrullus lanatus HOM05D003638 ORTHO05D003202 4.3e-19 98.2 109 51.4
Dinv22136 Davidia involucrata HOM05D003638 ORTHO05D003202 5.6e-19 97.8 98 61.2
Dinv42915 Davidia involucrata HOM05D003638 ORTHO05D003202 5.6e-19 97.8 98 61.2
Dinv43185 Davidia involucrata HOM05D003638 ORTHO05D003202 5.6e-19 97.8 98 61.2
Thecc.09G141300 Theobroma cacao HOM05D003638 ORTHO05D003202 5.6e-19 97.8 96 60.4
Gorai.013G237500 Gossypium raimondii HOM05D003638 ORTHO05D003202 9.5e-19 97.1 98 61.2
Oeu055917.1 Olea europaea HOM05D003638 ORTHO05D003202 9.5e-19 97.1 96 61.5
CsaV3_2G003550 Cucumis sativus L. HOM05D003638 ORTHO05D003202 1.2e-18 96.7 97 53.6
CSS0017335 Camellia sinensis var. sinensis HOM05D003638 ORTHO05D003202 1.6e-18 96.3 96 57.3
Hma1.2p1_0182F.1_g080450 Hydrangea macrophylla HOM05D003638 ORTHO05D003202 2.1e-18 95.9 97 59.8
Oeu051707.1 Olea europaea HOM05D003638 ORTHO05D003202 2.1e-18 95.9 103 58.3
GSVIVG01012890001 Vitis vinifera HOM05D003638 ORTHO05D003202 4.7e-18 94.7 111 55.0
MELO3C004441.2 Cucumis melo HOM05D003638 ORTHO05D003202 1.4e-17 93.2 109 47.7
Gohir.A13G203100 Gossypium hirsutum HOM05D003638 ORTHO05D003202 1.4e-17 93.2 97 60.8
Gohir.D13G208400 Gossypium hirsutum HOM05D003638 ORTHO05D003202 1.4e-17 93.2 97 60.8
TAR383G0618 Trochodendron aralioides HOM05D003638 ORTHO05D003202 3.1e-17 92.0 96 56.2
CSS0018942 Camellia sinensis var. sinensis HOM05D003638 ORTHO05D003202 5.2e-17 91.3 97 57.7
CiPaw.16G118000 Carya illinoinensis HOM05D003638 ORTHO05D003202 6.8e-17 90.9 95 53.7
CANSAT11G2120 Cannabis sativa HOM05D003638 ORTHO05D003202 1.2e-16 90.1 99 57.6
CiPaw.15G182800 Carya illinoinensis HOM05D003638 ORTHO05D003202 1.2e-16 90.1 95 53.7
TWI63G0270 Tripterygium wilfordii HOM05D003638 ORTHO05D003202 1.5e-16 89.7 96 55.2
CSS0003684 Camellia sinensis var. sinensis HOM05D003638 ORTHO05D003202 2.6e-16 89.0 97 56.7
TAR626G0601 Trochodendron aralioides HOM05D003638 ORTHO05D003202 2.6e-16 89.0 96 54.2
Nitab4.5_0005330g0090 Nicotiana tabacum HOM05D003638 ORTHO05D003202 4.4e-16 88.2 96 54.2
vmacro21884 Vaccinium macrocarpon HOM05D003638 ORTHO05D003202 4.4e-16 88.2 102 51.0
Actinidia21912 Actinidia chinensis HOM05D003638 ORTHO05D003202 9.8e-16 87.0 96 57.3
RcHm_v2.0_Chr2g0086711 Rosa chinensis HOM05D003638 ORTHO05D003202 9.8e-16 87.0 97 58.8
ClCG06G012030 Citrullus lanatus HOM05D003638 ORTHO05D003202 1.3e-15 86.7 96 55.2
Haze_19322 Corylus avellana HOM05D003638 ORTHO05D003202 1.3e-15 86.7 97 56.7
Ciclev10009499m.g Citrus clementina HOM05D003638 ORTHO05D003202 1.7e-15 86.3 101 52.5
Gohir.A08G095362 Gossypium hirsutum HOM05D003638 ORTHO05D003202 3.7e-15 85.1 96 55.2
Actinidia04244 Actinidia chinensis HOM05D003638 ORTHO05D003202 4.9e-15 84.7 98 55.1
Cfa020895 Carpinus fangiana HOM05D003638 ORTHO05D003202 6.4e-15 84.3 99 56.6
Cpa.g.sc46.85 Carica papaya HOM05D003638 ORTHO05D003202 8.3e-15 84.0 97 53.6
Cfa020896 Carpinus fangiana HOM05D003638 ORTHO05D003202 1.1e-14 83.6 111 48.6
MD02G1013200 Malus domestica HOM05D003638 ORTHO05D003202 1.1e-14 83.6 106 53.8
Potri.018G114500 Populus trichocarpa HOM05D003638 ORTHO05D003202 1.1e-14 83.6 95 55.8
Duzib150G0024 Durio zibethinus HOM05D003638 ORTHO05D003202 2.4e-14 82.4 96 55.2
FAN23G0723 Fragaria x ananassa HOM05D003638 ORTHO05D003202 4.1e-14 81.6 97 56.7
FAN26G1151 Fragaria x ananassa HOM05D003638 ORTHO05D003202 4.1e-14 81.6 97 56.7
Lj6g0008260 Lotus japonicus HOM05D003638 ORTHO05D003202 7.0e-14 80.9 106 48.1
Duzib187G0526 Durio zibethinus HOM05D003638 ORTHO05D003202 9.2e-14 80.5 97 51.5
Glyma.15G201800 Glycine max HOM05D003638 ORTHO05D003202 9.2e-14 80.5 97 52.6
Sed0014564 Sechium edule HOM05D003638 ORTHO05D003202 9.2e-14 80.5 106 49.1
Glyma.09G096300 Glycine max HOM05D003638 ORTHO05D003202 3.5e-13 78.6 97 51.5
Potri.006G190300 Populus trichocarpa HOM05D003638 ORTHO05D003202 3.5e-13 78.6 101 50.5
FvH4_1g01750 Fragaria vesca HOM05D003638 ORTHO05D003202 7.8e-13 77.4 97 53.6
FAN19G2555 Fragaria x ananassa HOM05D003638 ORTHO05D003202 7.8e-13 77.4 97 53.6
FAN28G0590 Fragaria x ananassa HOM05D003638 ORTHO05D003202 7.8e-13 77.4 97 53.6
Lalb_Chr23g0275841 Lupinus albus HOM05D003638 ORTHO05D003202 1.3e-12 76.6 95 48.4
MBI15_g25866_MAGBIO Magnolia biondii HOM05D003638 ORTHO05D003202 1.7e-12 76.3 96 50.0
Duzib187G0899 Durio zibethinus HOM05D003638 ORTHO05D003202 2.3e-12 75.9 97 51.5
Gohir.A06G050200 Gossypium hirsutum HOM05D003638 ORTHO05D003202 2.3e-12 75.9 102 49.0
Gorai.010G056400 Gossypium raimondii HOM05D003638 ORTHO05D003202 5.0e-12 74.7 102 49.0
Rhsim01G0052400 Rhododendron simsii HOM05D003638 ORTHO05D003202 6.6e-12 74.3 102 46.1
Aqoxy7G03537 Aquilegia oxysepala HOM05D003638 ORTHO05D003202 8.6e-12 73.9 95 50.5
CsaV3_1G028490 Cucumis sativus L. HOM05D003638 ORTHO05D003202 8.6e-12 73.9 108 44.4
QL02p091197 Quercus lobata HOM05D003638 ORTHO05D003202 8.6e-12 73.9 96 47.9
Lalb_Chr08g0233671 Lupinus albus HOM05D003638 ORTHO05D003202 1.1e-11 73.6 98 48.0
Psat1g023080 Pisum sativum HOM05D003638 ORTHO05D003202 1.1e-11 73.6 96 50.0
Medtr2g461020 Medicago truncatula HOM05D003638 ORTHO05D003202 1.5e-11 73.2 96 46.9
MELO3C010264.2 Cucumis melo HOM05D003638 ORTHO05D003202 1.9e-11 72.8 95 48.4
Sed0026668 Sechium edule HOM05D003638 ORTHO05D003202 1.9e-11 72.8 106 46.2
HanXRQChr12g0357031 Helianthus annuus HOM05D003638 ORTHO05D003202 2.5e-11 72.4 97 50.5
Sabra18G0097400 Salix brachista HOM05D003638 ORTHO05D003202 2.5e-11 72.4 92 52.2
Haze_19323 Corylus avellana HOM05D003638 ORTHO05D003202 4.3e-11 71.6 84 54.8
MD15G1160000 Malus domestica HOM05D003638 ORTHO05D003202 7.3e-11 70.9 106 50.0
Manes.14G138300 Manihot esculenta HOM05D003638 ORTHO05D003202 1.2e-10 70.1 99 49.5
arahy.Tifrunner.gnm1.ann1.ZD4V4J Arachis hypogaea HOM05D003638 ORTHO05D003202 2.1e-10 69.3 97 46.4
CARHR105850 Cardamine hirsuta HOM05D003638 ORTHO05D003202 2.1e-10 69.3 117 47.0
THA.LOC104808922 Tarenaya hassleriana HOM05D003638 ORTHO05D003202 4.7e-10 68.2 114 46.5
Glyma.17G105300 Glycine max HOM05D003638 ORTHO05D003202 6.2e-10 67.8 108 45.4
Sc14g0000080 Simmondsia chinensis HOM05D003638 ORTHO05D003202 6.2e-10 67.8 103 46.6
Lalb_Chr08g0233781 Lupinus albus HOM05D003638 ORTHO05D003202 1.1e-09 67.0 101 44.6
Eucgr.C04088 Eucalyptus grandis HOM05D003638 ORTHO05D003202 1.8e-09 66.2 98 46.9
Sp3g28870 Schrenkiella parvula HOM05D003638 ORTHO05D003202 1.8e-09 66.2 96 51.0
TPR.G25664 Trifolium pratense HOM05D003638 ORTHO05D003202 1.8e-09 66.2 97 46.4
Ah.14g078720 Amaranthus hybridus HOM05D003638 ORTHO05D003202 2.3e-09 65.9 92 47.8
SGA_v2.0_scaffold278G46736 Striga asiatica HOM05D003638 ORTHO05D003202 3.1e-09 65.5 103 43.7
CiPaw.15G182700 Carya illinoinensis HOM05D003638 ORTHO05D003202 4.0e-09 65.1 97 48.5
Phvul.009G209800 Phaseolus vulgaris HOM05D003638 ORTHO05D003202 4.0e-09 65.1 97 45.4
Aa31LG8G12110 Aethionema arabicum HOM05D003638 ORTHO05D003202 5.2e-09 64.7 96 50.0
Migut.K00380 Erythranthe guttata HOM05D003638 ORTHO05D003202 5.2e-09 64.7 114 43.9
MSTRG.26319 Avicennia marina HOM05D003638 ORTHO05D003202 8.9e-09 63.9 103 45.6
Carub.0003s2935 Capsella rubella HOM05D003638 ORTHO05D003202 8.9e-09 63.9 114 45.6
PGR102G3190 Punica granatum HOM05D003638 ORTHO05D003202 8.9e-09 63.9 97 47.4
AT2G15580 Arabidopsis thaliana HOM05D003638 ORTHO05D003202 1.2e-08 63.5 118 44.1
EL10Ac8g18824 Beta vulgaris HOM05D003638 ORTHO05D003202 1.5e-08 63.2 92 47.8
VMungo1309G1330 Vigna mungo HOM05D003638 ORTHO05D003202 3.4e-08 62.0 95 46.3
arahy.Tifrunner.gnm1.ann1.8W4I3Q Arachis hypogaea HOM05D003638 ORTHO05D003202 4.4e-08 61.6 98 42.9
MSTRG.26318 Avicennia marina HOM05D003638 ORTHO05D003202 4.4e-08 61.6 106 41.5
MSTRG.6091 Avicennia marina HOM05D003638 ORTHO05D003202 4.4e-08 61.6 102 44.1
BcaC06g36068 Brassica carinata HOM05D003638 ORTHO05D003202 4.4e-08 61.6 95 49.5
A07p05140 Brassica napus HOM05D003638 ORTHO05D003202 4.4e-08 61.6 118 44.1
C07p08290 Brassica napus HOM05D003638 ORTHO05D003202 4.4e-08 61.6 95 49.5
BolC7t41242H Brassica oleracea HOM05D003638 ORTHO05D003202 4.4e-08 61.6 95 49.5
BraA07t28311Z Brassica rapa HOM05D003638 ORTHO05D003202 4.4e-08 61.6 95 49.5
Thhalv10022864m.g Eutrema salsugineum HOM05D003638 ORTHO05D003202 4.4e-08 61.6 105 43.8
TPR.G15775 Trifolium pratense HOM05D003638 ORTHO05D003202 4.4e-08 61.6 95 45.3
DCAR_014923 Daucus carota HOM05D003638 ORTHO05D003202 5.8e-08 61.2 109 42.2
BcaB03g16305 Brassica carinata HOM05D003638 ORTHO05D003202 7.5e-08 60.8 118 43.2
BcaB03g16307 Brassica carinata HOM05D003638 ORTHO05D003202 7.5e-08 60.8 118 43.2
AL3G47340 Arabidopsis lyrata HOM05D003638 ORTHO05D003202 9.9e-08 60.5 117 43.6
BcaB08g34596 Brassica carinata HOM05D003638 ORTHO05D003202 9.9e-08 60.5 95 48.4
QL02p091214 Quercus lobata HOM05D003638 ORTHO05D003202 9.9e-08 60.5 99 44.4
Phvul.003G174500 Phaseolus vulgaris HOM05D003638 ORTHO05D003202 1.3e-07 60.1 104 40.4
Medtr4g116480 Medicago truncatula HOM05D003638 ORTHO05D003202 2.2e-07 59.3 105 44.8
A03p45490 Brassica napus HOM05D003638 ORTHO05D003202 2.9e-07 58.9 92 45.7
BraA03t13679Z Brassica rapa HOM05D003638 ORTHO05D003202 2.9e-07 58.9 92 45.7
Lsat_1_v5_gn_8_63100 Lactuca sativa HOM05D003638 ORTHO05D003202 2.9e-07 58.9 97 45.4
Manes.14G138400 Manihot esculenta HOM05D003638 ORTHO05D003202 2.9e-07 58.9 99 46.5
BcaC01g03063 Brassica carinata HOM05D011508 ORTHO05D017548 3.7e-07 58.5 92 45.7
C03p56460 Brassica napus HOM05D003638 ORTHO05D003202 3.7e-07 58.5 92 45.7
BolC3t17933H Brassica oleracea HOM05D003638 ORTHO05D003202 3.7e-07 58.5 92 45.7
SEGI_35833 Sequoiadendron giganteum HOM05D003638 ORTHO05D003202 6.4e-07 57.8 104 40.4
Hund09319 Selenicereus undatus HOM05D003638 ORTHO05D003202 1.1e-06 57.0 96 45.8
SEGI_39004 Sequoiadendron giganteum HOM05D003638 ORTHO05D003202 1.1e-06 57.0 102 40.2
arahy.Tifrunner.gnm1.ann1.V8YXJU Arachis hypogaea HOM05D003638 ORTHO05D003202 1.9e-06 56.2 101 40.6
A03p45520 Brassica napus HOM05D003638 ORTHO05D003202 1.9e-06 56.2 92 44.6
BraA03t13684Z Brassica rapa HOM05D003638 ORTHO05D003202 1.9e-06 56.2 92 44.6
HanXRQChr05g0137981 Helianthus annuus HOM05D003638 ORTHO05D003202 1.9e-06 56.2 97 45.4
Nn8g39712 Nelumbo nucifera HOM05D003638 ORTHO05D003202 1.9e-06 56.2 83 44.6
arahy.Tifrunner.gnm1.ann1.80FEVW Arachis hypogaea HOM05D003638 ORTHO05D003202 2.4e-06 55.8 98 40.8
arahy.Tifrunner.gnm1.ann1.Y03F6U Arachis hypogaea HOM05D003638 ORTHO05D003202 4.1e-06 55.1 113 38.9
COL.COLO4_24107 Corchorus olitorius HOM05D003638 ORTHO05D003202 5.4e-06 54.7 57 54.4
arahy.Tifrunner.gnm1.ann1.S7JRIG Arachis hypogaea HOM05D003638 ORTHO05D003202 7.1e-06 54.3 98 41.8
Os02g0798200 Oryza sativa ssp. japonica HOM05D003638 ORTHO05D003202 9.2e-06 53.9 95 41.1
PSO017G4113 Papaver somniferum HOM05D003638 ORTHO05D003202 9.2e-06 53.9 97 43.3


User provided reference genes

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