Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0007502g0010 Nicotiana tabacum HOM05D000087 ORTHO05D005735 0.0e+00 1979.9 1027 100.0
Nitab4.5_0000491g0190 Nicotiana tabacum HOM05D000087 ORTHO05D005735 0.0e+00 1779.6 1031 91.3
Solyc07g008450.3 Solanum lycopersicum HOM05D000087 ORTHO05D005735 0.0e+00 1731.8 1061 86.1
Sopen07g004380 Solanum pennellii HOM05D000087 ORTHO05D005735 0.0e+00 1731.8 1061 86.1
CAN.G1548.2 Capsicum annuum HOM05D000087 ORTHO05D005735 0.0e+00 1693.7 1061 84.5
Peaxi162Scf00046g00228 Petunia axillaris HOM05D000087 ORTHO05D005735 0.0e+00 1584.7 1052 80.2
Lj2C147G10 Lonicera japonica HOM05D000087 ORTHO05D005735 0.0e+00 1079.3 1108 54.9
Dinv11465 Davidia involucrata HOM05D000087 ORTHO05D005735 1.7e-303 1046.2 1098 54.9
Actinidia22240 Actinidia chinensis HOM05D000087 ORTHO05D005735 6.7e-297 1024.2 1066 54.9
GSVIVG01019707001 Vitis vinifera HOM05D000087 ORTHO05D005735 2.6e-296 1022.3 1092 53.1
MSTRG.22476 Avicennia marina HOM05D000087 ORTHO05D005735 1.2e-293 1013.4 1073 54.3
TAR629G0355 Trochodendron aralioides HOM05D000087 ORTHO05D005735 3.4e-288 995.3 1115 52.3
Gohir.A08G107500 Gossypium hirsutum HOM05D000087 ORTHO05D005735 8.3e-287 990.7 1095 52.1
Thecc.03G213700 Theobroma cacao HOM05D000087 ORTHO05D005735 2.0e-285 986.1 1081 51.8
Gorai.004G127300 Gossypium raimondii HOM05D000087 ORTHO05D005735 2.7e-285 985.7 1092 52.4
Duzib068G0232 Durio zibethinus HOM05D000087 ORTHO05D005735 7.7e-285 984.2 1090 50.6
Migut.H02249 Erythranthe guttata HOM05D000087 ORTHO05D005735 8.0e-282 974.2 1074 52.7
Cc08_g17160 Coffea canephora HOM05D000087 ORTHO05D005735 1.3e-279 966.8 1074 52.5
Prupe.5G137300 Prunus persica HOM05D000087 ORTHO05D005735 4.9e-279 964.9 1088 51.5
ECA246G1365 Erigeron canadensis HOM05D000087 ORTHO05D005735 7.0e-278 961.1 1077 52.5
MD06G1127500 Malus domestica HOM05D000087 ORTHO05D005735 1.6e-277 959.9 1095 51.6
TWI81G0850 Tripterygium wilfordii HOM05D000087 ORTHO05D005735 7.2e-275 951.0 1088 50.0
Gohir.D08G120500 Gossypium hirsutum HOM05D000087 ORTHO05D005735 1.2e-274 950.3 1090 51.0
FAN04G3195 Fragaria x ananassa HOM05D000087 ORTHO05D005735 3.4e-272 942.2 1086 50.8
HanXRQChr01g0016041 Helianthus annuus HOM05D000087 ORTHO05D005735 2.4e-270 936.0 1108 50.0
RcHm_v2.0_Chr7g0188131 Rosa chinensis HOM05D000087 ORTHO05D005735 3.2e-270 935.6 1085 50.2
FvH4_5g10170 Fragaria vesca HOM05D000087 ORTHO05D005735 2.0e-269 932.9 1088 50.4
FAN08G3226 Fragaria x ananassa HOM05D000087 ORTHO05D005735 2.3e-268 929.5 1084 50.6
PSO063G0654 Papaver somniferum HOM05D000087 ORTHO05D005735 5.6e-267 924.9 1111 49.3
SGA_v2.0_scaffold123G33449 Striga asiatica HOM05D000087 ORTHO05D005735 7.3e-267 924.5 1207 46.8
Ciclev10018581m.g Citrus clementina HOM05D000087 ORTHO05D005735 2.8e-266 922.5 1088 49.2
Manes.17G015000 Manihot esculenta HOM05D000087 ORTHO05D005735 6.8e-265 917.9 1098 49.5
Eucgr.D02539 Eucalyptus grandis HOM05D000087 ORTHO05D005735 1.6e-261 906.7 1100 48.5
QL02p026653 Quercus lobata HOM05D000087 ORTHO05D005735 1.3e-260 903.7 1025 50.9
PSO782G2195 Papaver somniferum HOM05D000087 ORTHO05D005735 3.6e-258 895.6 1111 48.7
CANSAT64G2851 Cannabis sativa HOM05D000087 ORTHO05D005735 1.8e-257 893.3 1084 48.1
FAN18G4270 Fragaria x ananassa HOM05D000087 ORTHO05D005735 2.0e-256 889.8 1088 48.8
Sabra16G0307100 Salix brachista HOM05D000087 ORTHO05D005735 1.9e-254 883.2 1055 48.2
Rhsim02G0255700 Rhododendron simsii HOM05D000087 ORTHO05D005735 9.2e-254 880.9 1124 48.1
AUR62039113 Chenopodium quinoa HOM05D000087 ORTHO05D005735 5.6e-251 871.7 1086 47.8
Nn3g18737 Nelumbo nucifera HOM05D000087 ORTHO05D005735 7.3e-251 871.3 1121 47.1
Lsat_1_v5_gn_3_13301 Lactuca sativa HOM05D000087 ORTHO05D005735 1.2e-248 864.0 1003 50.0
EL10Ac2g03880 Beta vulgaris HOM05D000087 ORTHO05D005735 2.4e-246 856.3 1097 46.8
Psat5g111000 Pisum sativum HOM05D000087 ORTHO05D005735 3.5e-245 852.4 1059 47.1
AUR62009145 Chenopodium quinoa HOM05D000087 ORTHO05D005735 7.8e-245 851.3 1088 47.6
CsaV3_5G001350 Cucumis sativus L. HOM05D000087 ORTHO05D005735 1.7e-244 850.1 1089 47.3
Lj6g0001276 Lotus japonicus HOM05D000087 ORTHO05D005735 1.1e-243 847.4 1076 47.1
Lalb_Chr14g0362591 Lupinus albus HOM05D000087 ORTHO05D005735 6.8e-241 838.2 1089 45.7
Sed0004639 Sechium edule HOM05D000087 ORTHO05D005735 1.2e-240 837.4 1086 46.3
Cfa011874 Carpinus fangiana HOM05D000087 ORTHO05D005735 2.9e-239 832.8 1032 48.1
THA.LOC104806594 Tarenaya hassleriana HOM05D000087 ORTHO05D005735 5.4e-238 828.6 1071 46.9
Sc01g0010950 Simmondsia chinensis HOM05D000087 ORTHO05D005735 6.6e-236 821.6 1103 45.3
Phvul.011G167550 Phaseolus vulgaris HOM05D000087 ORTHO05D005735 5.8e-232 808.5 1001 47.2
PGR031G2531 Punica granatum HOM05D000087 ORTHO05D005735 2.9e-231 806.2 1082 45.6
Carub.0007s0001 Capsella rubella HOM05D000087 ORTHO05D005735 4.2e-230 802.4 1079 45.4
CiPaw.11G106200 Carya illinoinensis HOM05D000087 ORTHO05D005735 1.6e-229 800.4 848 54.2
AT4G38120 Arabidopsis thaliana HOM05D000087 ORTHO05D005735 8.7e-228 794.7 1093 44.6
Sp7g37630 Schrenkiella parvula HOM05D000087 ORTHO05D005735 8.7e-228 794.7 1097 44.8
ClCG01G001230 Citrullus lanatus HOM05D000087 ORTHO05D005735 1.9e-227 793.5 1191 42.7
C01p21480 Brassica napus HOM05D000087 ORTHO05D005735 4.8e-226 788.9 1080 44.4
BolC1t02068H Brassica oleracea HOM05D000087 ORTHO05D005735 4.8e-226 788.9 1080 44.4
Medtr3g080640 Medicago truncatula HOM05D000087 ORTHO05D005735 7.6e-224 781.6 962 48.9
A01p17150 Brassica napus HOM05D000087 ORTHO05D005735 1.3e-223 780.8 1078 44.2
AL7G10010 Arabidopsis lyrata HOM05D000087 ORTHO05D005735 1.1e-222 777.7 1077 45.0
BraA01t01671Z Brassica rapa HOM05D000087 ORTHO05D005735 2.4e-222 776.5 1082 43.9
ATR0579G142 Amborella trichopoda HOM05D000087 ORTHO05D005735 4.6e-221 772.3 1055 45.0
MELO3C005812.2 Cucumis melo HOM05D000087 ORTHO05D005735 1.8e-220 770.4 1156 43.3
MBI04_g04806_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 3.3e-219 766.1 1157 42.9
Haze_09232 Corylus avellana HOM05D000087 ORTHO05D005735 9.6e-219 764.6 1092 44.7
Hund03336 Selenicereus undatus HOM05D000087 ORTHO05D005735 2.4e-217 760.0 1085 43.6
vmacro08519 Vaccinium macrocarpon HOM05D000087 ORTHO05D005735 2.5e-211 740.0 902 49.6
arahy.Tifrunner.gnm1.ann1.0XGN9Z Arachis hypogaea HOM05D000087 ORTHO05D005735 8.7e-204 714.9 1058 42.8
Zm00001eb416210 Zea mays HOM05D000087 ORTHO05D005735 1.4e-198 697.6 1037 42.5
DCAR_010123 Daucus carota HOM05D000087 ORTHO05D005735 2.2e-194 683.7 843 48.0
Aa31LG6G16960 Aethionema arabicum HOM05D000087 ORTHO05D005735 6.1e-189 665.6 987 42.9
Thhalv10024269m.g Eutrema salsugineum HOM05D000087 ORTHO05D005735 8.2e-186 655.2 1070 40.7
Potri.001G454200 Populus trichocarpa HOM05D000087 ORTHO05D005735 8.2e-186 655.2 723 50.1
Aqoxy5G04397 Aquilegia oxysepala HOM05D000087 ORTHO05D005735 5.0e-183 646.0 738 50.9
arahy.Tifrunner.gnm1.ann1.DH86LW Arachis hypogaea HOM05D000087 ORTHO05D005735 1.6e-173 614.4 1088 38.7
Mapoly0043s0141 Marchantia polymorpha HOM05D000087 ORTHO05D005735 1.0e-172 611.7 998 40.1
CDE02G0276 Ceratophyllum demersum HOM05D000087 ORTHO05D005735 5.2e-164 582.8 833 44.1
FAN18G0494 Fragaria x ananassa HOM05D000087 ORTHO05D005735 1.0e-156 558.5 891 41.3
Glyma.06G180700 Glycine max HOM05D000087 ORTHO05D005735 1.8e-153 547.7 662 47.9
Pp3c3_37190 Physcomitrium patens HOM05D000087 ORTHO05D005735 1.6e-152 544.7 997 37.3
SMO367G1062 Selaginella moellendorffii HOM05D000087 ORTHO05D005735 1.8e-148 531.2 1003 37.2
HPP92_028198 Vanilla planifolia HOM05D000087 ORTHO05D005735 1.6e-136 491.5 729 40.9
MD14G1143100 Malus domestica HOM05D000087 ORTHO05D005735 8.1e-133 479.2 554 52.0
Hma1.2p1_0198F.1_g085370 Hydrangea macrophylla HOM05D000087 ORTHO05D005735 1.1e-132 478.8 493 54.2
Atru.chr9.2610 Acer truncatum HOM05D000087 ORTHO05D005735 2.1e-125 454.5 501 52.3
VMungo1127G0184 Vigna mungo HOM05D000087 ORTHO05D005735 7.8e-120 436.0 576 46.7
HPP92_008913 Vanilla planifolia HOM05D000087 ORTHO05D005735 8.7e-119 432.6 673 39.7
CARHR143600 Cardamine hirsuta HOM05D000087 ORTHO05D005735 1.4e-105 388.7 486 47.3
Oeu019648.1 Olea europaea HOM05D000087 ORTHO05D005735 3.0e-103 380.9 388 55.4
Os08g0152900 Oryza sativa ssp. japonica HOM05D000087 ORTHO05D005735 3.7e-101 374.0 587 41.7
Ca_16291_v3 Cicer arietinum L. HOM05D000087 ORTHO05D005735 6.0e-96 356.7 389 50.6
Cpa.g.sc37.117 Carica papaya HOM05D000087 ORTHO05D005735 2.8e-93 347.8 497 44.7
CBR_g3175 Chara braunii HOM05D000087 ORTHO05D005735 1.6e-88 332.0 771 33.9
Glyma.06G181000 Glycine max HOM05D000087 ORTHO05D005735 4.2e-81 307.4 436 44.0
SEGI_15816 Sequoiadendron giganteum HOM05D000087 ORTHO05D005735 5.7e-78 297.0 386 47.4
MD14G1142900 Malus domestica HOM05D000087 ORTHO05D005735 1.4e-73 282.3 258 61.6
COL.COLO4_10863 Corchorus olitorius HOM05D000087 ORTHO05D005735 2.7e-72 278.1 1039 27.0
CSS0029196 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 7.7e-59 233.4 175 73.1
MCO07G377 Micromonas commoda HOM05D000087 ORTHO05D005735 5.5e-57 227.3 921 25.8
SEGI_26992 Sequoiadendron giganteum HOM05D000087 ORTHO05D005735 1.4e-52 212.6 258 47.7
Duzib084G1107 Durio zibethinus HOM05D000087 ORTHO05D005735 1.6e-51 209.1 366 36.6
AL8G10020 Arabidopsis lyrata HOM05D000087 ORTHO05D005735 1.7e-45 189.1 255 43.5
AUR62009162 Chenopodium quinoa HOM05D000087 ORTHO05D005735 4.1e-44 184.5 250 46.4
vmacro08520 Vaccinium macrocarpon HOM05D000087 ORTHO05D005735 3.8e-42 177.9 307 39.1
Duzib084G0823 Durio zibethinus HOM05D000087 ORTHO05D005735 4.0e-39 167.9 171 57.3
Cpa.g.sc363.3 Carica papaya HOM05D000087 ORTHO05D005735 1.7e-37 162.5 168 54.8
Nitab4.5_0000949g0050 Nicotiana tabacum HOM05D005235 ORTHO05D006938 3.5e-35 154.8 93 84.9
Nitab4.5_0000491g0070 Nicotiana tabacum HOM05D000087 ORTHO05D005735 1.0e-34 153.3 86 93.0
CSS0034403 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 3.9e-34 151.4 202 48.5
CSS0007327 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 1.5e-33 149.4 269 39.4
SalBow4G1355 Salvia bowleyana HOM05D000087 ORTHO05D005735 4.4e-30 137.9 169 44.4
Oeu053260.1 Olea europaea HOM05D000087 ORTHO05D010194 3.3e-25 121.7 109 61.5
FAN13G3301 Fragaria x ananassa HOM05D000087 ORTHO05D005735 9.5e-25 120.2 124 50.8
Cre03.g166600 Chlamydomonas reinhardtii HOM05D000087 ORTHO05D005735 2.1e-24 119.0 1141 20.7
HPP92_028197 Vanilla planifolia HOM05D000087 ORTHO05D005735 8.1e-24 117.1 172 41.3
CARHR293880 Cardamine hirsuta HOM05D000087 ORTHO05D005735 1.4e-23 116.3 126 52.4
SEGI_26806 Sequoiadendron giganteum HOM05D000087 ORTHO05D005735 1.7e-21 109.4 135 40.0
RcHm_v2.0_Chr7g0188121 Rosa chinensis HOM05D000087 ORTHO05D005735 3.2e-20 105.1 71 80.3
CSS0050207 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 5.1e-18 97.8 88 55.7
MBI04_g04804_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 6.6e-18 97.4 99 47.5
CARHR291390 Cardamine hirsuta HOM05D000087 ORTHO05D005735 1.4e-15 89.7 64 64.1
Hma1.2p1_0198F.1_g085360 Hydrangea macrophylla HOM05D000087 ORTHO05D005735 1.4e-15 89.7 88 50.0
Duzib084G0615 Durio zibethinus HOM05D000087 ORTHO05D005735 2.4e-15 89.0 94 53.2
VMungo1080G1218 Vigna mungo HOM05D000087 ORTHO05D005735 1.5e-14 86.3 97 49.5
VMungo0145G0001 Vigna mungo HOM05D000087 ORTHO05D005735 2.0e-14 85.9 97 48.5
Rhsim02G0255800 Rhododendron simsii HOM05D000087 ORTHO05D005735 3.4e-14 85.1 93 45.2
MBI17_g33112_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 2.2e-13 82.4 78 51.3
CSS0025060 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 2.9e-13 82.0 121 43.8
CiPaw.11G106300 Carya illinoinensis HOM05D000087 ORTHO05D005735 4.9e-13 81.3 142 33.8
CARHR046160 Cardamine hirsuta HOM05D000087 ORTHO05D005735 1.9e-12 79.3 61 60.7
SalBow1G5284 Salvia bowleyana HOM05D000087 ORTHO05D005735 5.4e-12 77.8 75 60.0
Medtr3g080660 Medicago truncatula HOM05D000087 ORTHO05D005735 7.1e-12 77.4 95 44.2
SEGI_26704 Sequoiadendron giganteum HOM05D000087 ORTHO05D005735 1.0e-10 73.6 92 44.6
MBI04_g04802_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 3.0e-10 72.0 68 60.3
MD14G1142800 Malus domestica HOM05D000087 ORTHO05D005735 1.5e-09 69.7 135 33.3
CARHR293870 Cardamine hirsuta HOM05D000087 ORTHO05D005735 7.3e-09 67.4 82 43.9
CARHR293850 Cardamine hirsuta HOM05D000087 ORTHO05D005735 7.6e-06 57.4 79 43.0


User provided reference genes

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