Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0007482g0040 Nicotiana tabacum HOM05D004301 ORTHO05D005124 8.0e-68 260.4 139 100.0
PGSC0003DMG400016459 Solanum tuberosum HOM05D004301 ORTHO05D005124 1.8e-67 259.2 139 99.3
Nitab4.5_0007007g0030 Nicotiana tabacum HOM05D004301 ORTHO05D005124 3.0e-67 258.5 139 99.3
Sopen02g025120 Solanum pennellii HOM05D004301 ORTHO05D005124 5.2e-67 257.7 139 98.6
Solyc02g080430.3 Solanum lycopersicum HOM05D004301 ORTHO05D005124 9.8e-66 253.4 139 97.1
CAN.G1175.8 Capsicum annuum HOM05D004301 ORTHO05D005124 1.1e-64 250.0 139 95.7
Peaxi162Scf00595g00039 Petunia axillaris HOM05D004301 ORTHO05D005124 1.4e-64 249.6 140 97.1
Rhsim13G0155100 Rhododendron simsii HOM05D004301 ORTHO05D005124 7.2e-61 237.3 139 92.1
vmacro03693 Vaccinium macrocarpon HOM05D004301 ORTHO05D005124 1.2e-60 236.5 139 91.4
Cpa.g.sc198.42 Carica papaya HOM05D004301 ORTHO05D005124 4.7e-60 234.6 139 90.6
Duzib235G0809 Durio zibethinus HOM05D004301 ORTHO05D005124 8.8e-59 230.3 139 89.9
Lj1A1229G41 Lonicera japonica HOM05D004301 ORTHO05D005124 8.8e-59 230.3 140 88.6
Rhsim08G0082200 Rhododendron simsii HOM05D004301 ORTHO05D005124 1.2e-58 229.9 139 89.2
CiPaw.09G090400 Carya illinoinensis HOM05D004301 ORTHO05D005124 2.0e-58 229.2 142 88.7
Dinv18010 Davidia involucrata HOM05D004301 ORTHO05D005124 2.0e-58 229.2 139 89.2
CSS0003131 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 3.4e-58 228.4 139 89.2
Gohir.D06G153800 Gossypium hirsutum HOM05D004301 ORTHO05D005124 3.4e-58 228.4 139 88.5
Gorai.010G179800 Gossypium raimondii HOM05D004301 ORTHO05D005124 3.4e-58 228.4 139 88.5
Hund21400 Selenicereus undatus HOM05D004301 ORTHO05D005124 4.4e-58 228.0 139 85.6
TAR626G0955 Trochodendron aralioides HOM05D004301 ORTHO05D005124 4.4e-58 228.0 139 89.2
Ciclev10017125m.g Citrus clementina HOM05D004301 ORTHO05D005124 5.7e-58 227.6 139 87.8
Gohir.A06G147900 Gossypium hirsutum HOM05D004301 ORTHO05D005124 5.7e-58 227.6 139 88.5
Cfa000237 Carpinus fangiana HOM05D004301 ORTHO05D005124 7.5e-58 227.3 139 86.3
CSS0040354 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 9.8e-58 226.9 139 88.5
Haze_06785 Corylus avellana HOM05D004301 ORTHO05D005124 9.8e-58 226.9 139 86.3
Thecc.06G088100 Theobroma cacao HOM05D004301 ORTHO05D005124 9.8e-58 226.9 139 88.5
TWI63G1781 Tripterygium wilfordii HOM05D004301 ORTHO05D005124 9.8e-58 226.9 139 87.8
CSS0019231 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 2.2e-57 225.7 139 88.5
Atru.chr10.2203 Acer truncatum HOM05D004301 ORTHO05D005124 3.7e-57 224.9 140 87.1
MSTRG.7223 Avicennia marina HOM05D004301 ORTHO05D005124 3.7e-57 224.9 140 87.1
CsaV3_4G017560 Cucumis sativus L. HOM05D004301 ORTHO05D005124 6.3e-57 224.2 139 87.1
MELO3C014729.2 Cucumis melo HOM05D004301 ORTHO05D005124 8.3e-57 223.8 139 86.3
Prupe.4G022700 Prunus persica HOM05D004301 ORTHO05D005124 8.3e-57 223.8 139 87.1
Sc05g0009100 Simmondsia chinensis HOM05D004301 ORTHO05D005124 1.1e-56 223.4 140 85.7
SGA_v2.0_scaffold4G01921 Striga asiatica HOM05D004301 ORTHO05D005124 1.1e-56 223.4 143 83.2
TAR629G3276 Trochodendron aralioides HOM05D004301 ORTHO05D005124 1.1e-56 223.4 139 87.1
Cc00_g00410 Coffea canephora HOM05D004301 ORTHO05D005124 1.8e-56 222.6 141 86.5
COL.COLO4_28865 Corchorus olitorius HOM05D004301 ORTHO05D005124 3.1e-56 221.9 139 86.3
THA.LOC104806300 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 4.1e-56 221.5 140 85.7
RcHm_v2.0_Chr5g0030661 Rosa chinensis HOM05D004301 ORTHO05D005124 9.1e-56 220.3 139 85.6
SalBow8G0640 Salvia bowleyana HOM05D004301 ORTHO05D005124 9.1e-56 220.3 139 82.7
Cc03_g13960 Coffea canephora HOM05D004301 ORTHO05D005124 1.2e-55 219.9 141 85.1
Psat3g175280 Pisum sativum HOM05D004301 ORTHO05D005124 1.2e-55 219.9 138 83.3
FAN16G3380 Fragaria x ananassa HOM05D004301 ORTHO05D005124 1.6e-55 219.5 139 84.9
Potri.004G017100 Populus trichocarpa HOM05D004301 ORTHO05D005124 1.6e-55 219.5 139 86.3
Sabra04G0009400 Salix brachista HOM05D004301 ORTHO05D005124 2.0e-55 219.2 139 86.3
CARHR252750 Cardamine hirsuta HOM05D004301 ORTHO05D005124 2.7e-55 218.8 141 83.7
Manes.03G210700 Manihot esculenta HOM05D004301 ORTHO05D005124 2.7e-55 218.8 139 87.1
QL05p073536 Quercus lobata HOM05D004301 ORTHO05D005124 2.7e-55 218.8 143 83.9
Carub.0006s3270 Capsella rubella HOM05D004301 ORTHO05D005124 4.5e-55 218.0 140 84.3
Oeu033197.1 Olea europaea HOM05D004301 ORTHO05D005124 4.5e-55 218.0 140 85.0
QL05p073775 Quercus lobata HOM05D004301 ORTHO05D005124 5.9e-55 217.6 143 83.2
arahy.Tifrunner.gnm1.ann1.0XE69C Arachis hypogaea HOM05D004301 ORTHO05D005124 1.0e-54 216.9 139 83.5
arahy.Tifrunner.gnm1.ann1.210EWG Arachis hypogaea HOM05D004301 ORTHO05D005124 1.3e-54 216.5 139 83.5
CANSAT56G0804 Cannabis sativa HOM05D004301 ORTHO05D005124 2.3e-54 215.7 141 83.0
FvH4_3g18180 Fragaria vesca HOM05D004301 ORTHO05D005124 2.3e-54 215.7 139 84.2
PGR004G0513 Punica granatum HOM05D004301 ORTHO05D005124 2.3e-54 215.7 142 83.1
Oeu037360.1 Olea europaea HOM05D004301 ORTHO05D005124 2.9e-54 215.3 141 83.7
arahy.Tifrunner.gnm1.ann1.6J361A Arachis hypogaea HOM05D004301 ORTHO05D005124 3.8e-54 214.9 139 82.7
Migut.M01306 Erythranthe guttata HOM05D004301 ORTHO05D005124 3.8e-54 214.9 141 82.3
Lj5g0024394 Lotus japonicus HOM05D004301 ORTHO05D005124 5.0e-54 214.5 138 83.3
AT4G04780 Arabidopsis thaliana HOM05D004301 ORTHO05D005124 6.6e-54 214.2 140 83.6
Phvul.007G037700 Phaseolus vulgaris HOM05D004301 ORTHO05D005124 6.6e-54 214.2 138 83.3
Sp6g04160 Schrenkiella parvula HOM05D004301 ORTHO05D005124 6.6e-54 214.2 140 82.1
ATR0752G175 Amborella trichopoda HOM05D004301 ORTHO05D005124 1.1e-53 213.4 139 83.5
Lj2g0004276 Lotus japonicus HOM05D004301 ORTHO05D005124 1.9e-53 212.6 138 82.6
RcHm_v2.0_Chr5g0030681 Rosa chinensis HOM05D004301 ORTHO05D005124 1.9e-53 212.6 139 82.7
AL6G48270 Arabidopsis lyrata HOM05D004301 ORTHO05D005124 3.3e-53 211.8 140 82.1
THA.LOC104813057 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 4.3e-53 211.5 140 80.7
FAN25G1723 Fragaria x ananassa HOM05D004301 ORTHO05D005124 5.6e-53 211.1 139 82.0
HPP92_021475 Vanilla planifolia HOM05D004301 ORTHO05D005124 7.2e-53 210.7 139 82.7
ECA248G0561 Erigeron canadensis HOM05D004301 ORTHO05D005124 1.2e-52 209.9 147 79.6
Lsat_1_v5_gn_1_128621 Lactuca sativa HOM05D004301 ORTHO05D005124 1.2e-52 209.9 164 73.2
Manes.09G000400 Manihot esculenta HOM05D004301 ORTHO05D005124 1.2e-52 209.9 139 83.5
Medtr7g037020 Medicago truncatula HOM05D004301 ORTHO05D005124 2.1e-52 209.1 138 81.9
PSO339G4464 Papaver somniferum HOM05D004301 ORTHO05D005124 2.1e-52 209.1 139 80.6
PSO384G5030 Papaver somniferum HOM05D004301 ORTHO05D005124 2.1e-52 209.1 139 80.6
TPR.G23756 Trifolium pratense HOM05D004301 ORTHO05D005124 2.1e-52 209.1 138 81.9
Glyma.10G264300 Glycine max HOM05D004301 ORTHO05D005124 4.7e-52 208.0 138 81.9
Ca_26119_v3 Cicer arietinum L. HOM05D004301 ORTHO05D005124 6.1e-52 207.6 138 81.2
Lalb_Chr17g0338691 Lupinus albus HOM05D004301 ORTHO05D005124 1.4e-51 206.5 139 79.9
BcaB01g01837 Brassica carinata HOM05D004301 ORTHO05D005124 3.0e-51 205.3 149 77.2
Aqoxy3G02575 Aquilegia oxysepala HOM05D004301 ORTHO05D005124 5.2e-51 204.5 148 77.7
MBI16_g31789_MAGBIO Magnolia biondii HOM05D004301 ORTHO05D005124 5.2e-51 204.5 153 76.5
A09p26100 Brassica napus HOM05D004301 ORTHO05D005124 2.6e-50 202.2 151 74.8
BraA09t38177Z Brassica rapa HOM05D004301 ORTHO05D005124 2.6e-50 202.2 151 74.8
CDE05G1190 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 2.6e-50 202.2 139 80.6
DCAR_008141 Daucus carota HOM05D004301 ORTHO05D005124 1.3e-49 199.9 141 79.4
FAN12G2174 Fragaria x ananassa HOM05D004301 ORTHO05D005124 1.3e-49 199.9 144 76.4
HanXRQChr10g0285201 Helianthus annuus HOM05D004301 ORTHO05D005124 1.3e-49 199.9 160 70.0
FAN07G2330 Fragaria x ananassa HOM05D004301 ORTHO05D005124 4.9e-49 198.0 144 75.7
BolC9t56147H Brassica oleracea HOM05D004301 ORTHO05D005124 6.4e-49 197.6 152 73.7
CDE04G1315 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 6.4e-49 197.6 139 78.4
Aa31LG9G9690 Aethionema arabicum HOM05D004301 ORTHO05D005124 1.1e-48 196.8 140 77.1
Cc00_g35050 Coffea canephora HOM05D004301 ORTHO05D005124 1.1e-48 196.8 141 78.0
BcaC04g21325 Brassica carinata HOM05D004301 ORTHO05D005124 1.4e-48 196.4 155 72.3
C02p40060 Brassica napus HOM05D004301 ORTHO05D005124 1.4e-48 196.4 135 79.3
C09p33120 Brassica napus HOM05D004301 ORTHO05D005124 1.4e-48 196.4 155 72.3
unitig_748.g7577 Utricularia gibba HOM05D004301 ORTHO05D005124 1.4e-48 196.4 140 75.7
VMungo0720G3170 Vigna mungo HOM05D004301 ORTHO05D005124 2.4e-48 195.7 173 65.9
RcHm_v2.0_Chr4g0426811 Rosa chinensis HOM05D004301 ORTHO05D005124 2.0e-47 192.6 146 73.3
FvH4_4g21200 Fragaria vesca HOM05D004301 ORTHO05D005124 3.5e-47 191.8 148 73.0
PSO170G5652 Papaver somniferum HOM05D004301 ORTHO05D005124 4.6e-47 191.4 139 74.1
ClCG02G024420 Citrullus lanatus HOM05D005410 ORTHO05D007394 1.0e-46 190.3 113 90.3
Nn7g37600 Nelumbo nucifera HOM05D004301 ORTHO05D005124 1.3e-46 189.9 113 92.0
EL10Ac8g20032 Beta vulgaris HOM05D004301 ORTHO05D005124 1.7e-46 189.5 168 63.7
Ah.09g234990 Amaranthus hybridus HOM05D004301 ORTHO05D005124 5.0e-46 188.0 176 61.9
MD10G1319700 Malus domestica HOM05D004301 ORTHO05D005124 1.1e-45 186.8 139 74.1
BraA02t07511Z Brassica rapa HOM05D004301 ORTHO05D005124 5.6e-45 184.5 135 76.3
SEGI_29072 Sequoiadendron giganteum HOM05D004301 ORTHO05D005124 8.0e-44 180.6 139 70.5
AUR62012686 Chenopodium quinoa HOM05D004301 ORTHO05D005124 4.0e-43 178.3 137 72.3
arahy.Tifrunner.gnm1.ann1.RW8N71 Arachis hypogaea HOM05D004301 ORTHO05D005124 3.4e-42 175.3 115 81.7
Mapoly0013s0130 Marchantia polymorpha HOM05D004301 ORTHO05D005124 8.3e-41 170.6 139 64.7
SEGI_24906 Sequoiadendron giganteum HOM05D004301 ORTHO05D005124 7.0e-40 167.5 169 57.4
PSO017G1667 Papaver somniferum HOM05D004301 ORTHO05D005124 9.2e-40 167.2 113 79.6
FAN20G0317 Fragaria x ananassa HOM05D004301 ORTHO05D005124 1.6e-39 166.4 116 80.2
unitig_32.g11531 Utricularia gibba HOM05D004301 ORTHO05D005124 1.3e-38 163.3 119 75.6
A02p25250 Brassica napus HOM05D004301 ORTHO05D005124 1.7e-38 162.9 135 68.9
AagrBONN_evm.TU.Sc2ySwM_362.2472 Anthoceros agrestis HOM05D004301 ORTHO05D005124 5.0e-38 161.4 139 63.3
PSO478G1674 Papaver somniferum HOM05D004301 ORTHO05D005124 8.6e-38 160.6 128 72.7
BolC2t10033H Brassica oleracea HOM05D004301 ORTHO05D005124 1.5e-37 159.8 135 69.6
Duzib192G0451 Durio zibethinus HOM05D004301 ORTHO05D005124 2.1e-36 156.0 113 77.0
Pp3c1_16690 Physcomitrium patens HOM05D004301 ORTHO05D005124 4.7e-36 154.8 137 61.3
BcaC03g16234 Brassica carinata HOM05D004301 ORTHO05D005124 6.8e-35 151.0 109 76.1
Zm00001eb173130 Zea mays HOM05D004301 ORTHO05D005124 3.4e-34 148.7 166 56.0
Oeu033198.1 Olea europaea HOM05D004301 ORTHO05D005124 1.9e-32 142.9 97 80.4
Prupe.1G108500 Prunus persica HOM05D004301 ORTHO05D005124 3.2e-32 142.1 131 64.1
Nitab4.5_0003254g0080 Nicotiana tabacum HOM05D004301 ORTHO05D005124 1.6e-31 139.8 80 96.2
Actinidia26923 Actinidia chinensis HOM05D004301 ORTHO05D005124 2.1e-31 139.4 112 73.2
CAN.G138.7 Capsicum annuum HOM05D004301 ORTHO05D005124 3.5e-31 138.7 132 62.1
SMO200G0228 Selaginella moellendorffii HOM05D004301 ORTHO05D005124 3.9e-30 135.2 155 54.2
BcaC03g16233 Brassica carinata HOM05D004301 ORTHO05D005124 5.1e-30 134.8 115 67.8
CDE05G0994 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 7.3e-29 131.0 119 63.9
CBR_g6572 Chara braunii HOM05D004301 ORTHO05D005124 1.2e-28 130.2 136 55.9
Gorai.005G123500 Gossypium raimondii HOM05D004301 ORTHO05D005124 4.7e-28 128.3 80 87.5
BcaB05g23708 Brassica carinata HOM05D004301 ORTHO05D005124 6.2e-28 127.9 138 55.8
Psat5g160160 Pisum sativum HOM05D004301 ORTHO05D005124 8.1e-28 127.5 85 77.6
Gohir.D02G172033 Gossypium hirsutum HOM05D004301 ORTHO05D005124 4.0e-27 125.2 80 85.0
Gohir.D09G045050 Gossypium hirsutum HOM05D004301 ORTHO05D005124 8.9e-27 124.0 80 83.8
Gorai.006G117000 Gossypium raimondii HOM05D004301 ORTHO05D005124 1.2e-26 123.6 79 86.1
Psat5g160080 Pisum sativum HOM05D004301 ORTHO05D005124 1.2e-26 123.6 85 75.3
Gohir.D10G075550 Gossypium hirsutum HOM05D004301 ORTHO05D005124 3.4e-26 122.1 76 89.5
Eucgr.G02030 Eucalyptus grandis HOM05D004301 ORTHO05D005124 2.4e-24 115.9 69 89.9
AUR62021971 Chenopodium quinoa HOM05D004301 ORTHO05D005124 9.2e-24 114.0 69 84.1
Nitab4.5_0003254g0090 Nicotiana tabacum HOM05D004301 ORTHO05D005124 1.6e-23 113.2 58 96.6
FAN21G3317 Fragaria x ananassa HOM05D004301 ORTHO05D005124 2.1e-20 102.8 70 77.1
Os08g0135600 Oryza sativa ssp. japonica HOM05D004301 ORTHO05D005124 3.4e-18 95.5 69 78.3
Gorai.001G171600 Gossypium raimondii HOM05D001075 ORTHO05D001779 5.8e-18 94.7 101 60.4
Medtr1g107580 Medicago truncatula HOM05D004301 ORTHO05D005124 7.1e-16 87.8 82 59.8
A05p31460 Brassica napus HOM05D004301 ORTHO05D005124 9.3e-16 87.4 72 66.7
BraA05t21985Z Brassica rapa HOM05D004301 ORTHO05D005124 9.3e-16 87.4 72 66.7
Aqoxy3G02572 Aquilegia oxysepala HOM05D004301 ORTHO05D005124 1.6e-15 86.7 57 82.5
RcHm_v2.0_Chr4g0426791 Rosa chinensis HOM05D004301 ORTHO05D005124 6.0e-15 84.7 77 62.3
MCO03G202 Micromonas commoda HOM05D004301 ORTHO05D005124 1.1e-13 80.5 131 41.2
SGA_v2.0_scaffold14G06848 Striga asiatica HOM05D004301 ORTHO05D005124 2.1e-12 76.3 64 59.4
A06p38190 Brassica napus HOM05D004301 ORTHO05D005124 9.0e-11 70.9 109 46.8
BraA06t26734Z Brassica rapa HOM05D004301 ORTHO05D005124 9.0e-11 70.9 109 46.8
C05p45830 Brassica napus HOM05D004301 ORTHO05D005124 4.9e-09 65.1 49 67.3
C05p45820 Brassica napus HOM05D004301 ORTHO05D005124 6.4e-09 64.7 51 64.7
BolC5t33302H Brassica oleracea HOM05D004301 ORTHO05D005124 1.1e-08 63.9 51 64.7
BcaB02g10679 Brassica carinata HOM05D004301 ORTHO05D005124 7.9e-07 57.8 44 70.5
A07p00860 Brassica napus HOM05D004301 ORTHO05D005124 1.7e-06 56.6 37 73.0
BraA07t27884Z Brassica rapa HOM05D004301 ORTHO05D005124 1.7e-06 56.6 37 73.0


User provided reference genes

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